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Deploying the suffix array

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Tibo Vande Moortele edited this page Jun 24, 2024 · 10 revisions

Deploy using the CLI

Deploy using Docker

Deploy using the Unipept server

Moving files from the HPC virtual organisation

Variables

  • PATH_OF_SA_BINARY = /kyukon/data/gent/vo/000/gvo00038/suffix-array/sa_sparse3_compressed.bin
  • PATH_OF_INDEX_DIRECTORY = /mnt/data/uniprot-2024-03

Move the suffix array binary

scp hpc-tibo:PATH_OF_SA_BINARY PATH_OF_INDEX_DIRECTORY/suffix-array

Deploying the suffix array

TODO

Creating the database

TODO

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