From 8c854b03491784a6df017e988aad19b5b1b81472 Mon Sep 17 00:00:00 2001
From: stijndcl <declercq.stijn@outlook.com>
Date: Tue, 6 Feb 2024 14:57:13 +0100
Subject: [PATCH] Create script to compile and move binaries, ignore them

---
 scripts/build_binaries.sh         | 23 +++++++++++++++++++++++
 scripts/helper_scripts/.gitignore |  8 ++++++++
 2 files changed, 31 insertions(+)
 create mode 100755 scripts/build_binaries.sh
 create mode 100644 scripts/helper_scripts/.gitignore

diff --git a/scripts/build_binaries.sh b/scripts/build_binaries.sh
new file mode 100755
index 0000000..6905226
--- /dev/null
+++ b/scripts/build_binaries.sh
@@ -0,0 +1,23 @@
+#! /usr/bin/env bash
+
+# All references to an external script should be relative to the location of this script.
+# See: http://mywiki.wooledge.org/BashFAQ/028
+CURRENT_LOCATION="${BASH_SOURCE%/*}"
+
+checkdep() {
+    which $1 > /dev/null 2>&1 || hash $1 > /dev/null 2>&1 || {
+        echo "Unipept database builder requires ${2:-$1} to be installed." >&2
+        exit 1
+    }
+}
+
+checkdep cargo "Rust Toolchain"
+
+# Build binaries and copy them to the /helper_scripts folder
+cd $CURRENT_LOCATION/helper_scripts/unipept-database-rs
+cargo build --release
+
+for BINARY in "functional-analysis" "lcas" "taxa-by-chunk" "taxons-lineages" "taxons-uniprots-tables" "write-to-chunk" "xml-parser"
+do
+  cp "./target/release/$BINARY" ..
+done
diff --git a/scripts/helper_scripts/.gitignore b/scripts/helper_scripts/.gitignore
new file mode 100644
index 0000000..dbfeff6
--- /dev/null
+++ b/scripts/helper_scripts/.gitignore
@@ -0,0 +1,8 @@
+# Ignore the compiled binaries that get moved here
+functional-analysis
+lcas
+taxa-by-chunk
+taxons-lineages
+taxons-uniprots-tables
+write-to-chunk
+xml-parser