From 44e2287b35a0e0286409ffdc51bb5905f48b8d10 Mon Sep 17 00:00:00 2001 From: Felix Van der Jeugt Date: Thu, 2 Sep 2021 14:12:46 +0200 Subject: [PATCH] fix target location of proteome cross references table --- run.sh | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/run.sh b/run.sh index 1408630..5ca3bbf 100755 --- a/run.sh +++ b/run.sh @@ -149,7 +149,7 @@ create_most_tables() { --go "$(gz "$TABDIR/go_cross_references.tsv.gz")" \ --interpro "$(gz "$TABDIR/interpro_cross_references.tsv.gz")" \ --proteomes "$(gz "$INTDIR/proteomes.tsv.gz")" \ - --proteomes-ref "$(gz "$TMP/proteome_cross_references.tsv.gz")" \ + --proteomes-ref "$(gz "$TABDIR/proteome_cross_references.tsv.gz")" \ $sources mkfifo "$TMP/sources" @@ -538,7 +538,7 @@ kmer-index) rm "$TABDIR/go_cross_references.tsv.gz" rm "$TABDIR/interpro_cross_references.tsv.gz" rm "$INTDIR/proteomes.tsv.gz" - rm "$TMP/proteome_cross_references.tsv.gz" + rm "$TABDIR/proteome_cross_references.tsv.gz" fi create_kmer_index ;; @@ -558,7 +558,7 @@ tryptic-index) rm "$TABDIR/go_cross_references.tsv.gz" rm "$TABDIR/interpro_cross_references.tsv.gz" rm "$INTDIR/proteomes.tsv.gz" - rm "$TMP/proteome_cross_references.tsv.gz" + rm "$TABDIR/proteome_cross_references.tsv.gz" join_equalized_pepts_and_entries join_original_pepts_and_entries rm "$INTDIR/uniprot_entries.tsv.gz"