From 5eecb4c8be1669dd1be8898adb9705969714b0d3 Mon Sep 17 00:00:00 2001
From: tibvdm <tibovandemoortele@hotmail.com>
Date: Tue, 18 Jun 2024 18:11:41 +0200
Subject: [PATCH] basic timing pept2data

---
 app/controllers/mpa/pept2data_controller.rb     | 9 +++++++++
 app/views/mpa/pept2data/pept2data.json.jbuilder | 1 +
 2 files changed, 10 insertions(+)

diff --git a/app/controllers/mpa/pept2data_controller.rb b/app/controllers/mpa/pept2data_controller.rb
index a281cf6..4dbce6a 100644
--- a/app/controllers/mpa/pept2data_controller.rb
+++ b/app/controllers/mpa/pept2data_controller.rb
@@ -1,7 +1,13 @@
 class Mpa::Pept2dataController < Mpa::MpaController
   include SuffixArrayHelper
 
+  def get_time
+    Process.clock_gettime(Process::CLOCK_MONOTONIC, :millisecond)
+  end
+
   def pept2data
+    start = get_time
+
     peptides = params[:peptides] || []
     missed = params[:missed].nil? ? false : params[:missed]
     equate_il = params[:equate_il].nil? ? true : params[:equate_il]
@@ -26,5 +32,8 @@ def pept2data
     Lineage.find(taxa).each do |lineage|
       @lineages[lineage.taxon_id] = lineage.to_a_idx
     end
+
+    @timings = Hash.new
+    @timings["total"] = get_time - start
   end
 end
diff --git a/app/views/mpa/pept2data/pept2data.json.jbuilder b/app/views/mpa/pept2data/pept2data.json.jbuilder
index 12abf2a..1191d0f 100644
--- a/app/views/mpa/pept2data/pept2data.json.jbuilder
+++ b/app/views/mpa/pept2data/pept2data.json.jbuilder
@@ -7,3 +7,4 @@ json.peptides @response do |peptide|
     json.data peptide["fa"]["data"]
   end
 end
+json.timings @timings