diff --git a/01-stacks/4.0.0.json b/01-stacks/4.0.0.json
index 3b615e9..6d0a62b 100644
--- a/01-stacks/4.0.0.json
+++ b/01-stacks/4.0.0.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.0.0",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.0.0",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.0.1.json b/01-stacks/4.0.1.json
index 4786a72..beff2d7 100644
--- a/01-stacks/4.0.1.json
+++ b/01-stacks/4.0.1.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.0.1",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.0.1",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.0.2.json b/01-stacks/4.0.2.json
index 506a13a..c453878 100644
--- a/01-stacks/4.0.2.json
+++ b/01-stacks/4.0.2.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.0.2",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.0.2",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.0.3.json b/01-stacks/4.0.3.json
index 5fc14c8..ffe32d5 100644
--- a/01-stacks/4.0.3.json
+++ b/01-stacks/4.0.3.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.0.3",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.0.3",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.0.4.json b/01-stacks/4.0.4.json
index d10e187..be8f82c 100644
--- a/01-stacks/4.0.4.json
+++ b/01-stacks/4.0.4.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.0.4",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.0.4",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.0.5.json b/01-stacks/4.0.5.json
index aa27c5b..eaaaef3 100644
--- a/01-stacks/4.0.5.json
+++ b/01-stacks/4.0.5.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.0.5",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.0.5",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.1.0.json b/01-stacks/4.1.0.json
index f40eefe..6696367 100644
--- a/01-stacks/4.1.0.json
+++ b/01-stacks/4.1.0.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.1.0",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.1.0",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.1.1.json b/01-stacks/4.1.1.json
index b09f53c..f6d15ee 100644
--- a/01-stacks/4.1.1.json
+++ b/01-stacks/4.1.1.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.1.1",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.1.1",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.1.2.json b/01-stacks/4.1.2.json
index ea3e560..bcdef28 100644
--- a/01-stacks/4.1.2.json
+++ b/01-stacks/4.1.2.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.1.2",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.1.2",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.1.3.json b/01-stacks/4.1.3.json
index f8e540a..202327d 100644
--- a/01-stacks/4.1.3.json
+++ b/01-stacks/4.1.3.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.1.3",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.1.3",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.2.0.json b/01-stacks/4.2.0.json
index 0a34fd2..41a4054 100644
--- a/01-stacks/4.2.0.json
+++ b/01-stacks/4.2.0.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.2.0",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.2.0",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.2.1.json b/01-stacks/4.2.1.json
index c6fd7cf..f026730 100644
--- a/01-stacks/4.2.1.json
+++ b/01-stacks/4.2.1.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.2.1",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.2.1",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.2.2.json b/01-stacks/4.2.2.json
index 041acd7..157eb9c 100644
--- a/01-stacks/4.2.2.json
+++ b/01-stacks/4.2.2.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.2.2",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.2.2",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.2.3.json b/01-stacks/4.2.3.json
index d591e59..245113a 100644
--- a/01-stacks/4.2.3.json
+++ b/01-stacks/4.2.3.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.2.3",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.2.3",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.3.0.json b/01-stacks/4.3.0.json
index 037f854..a1e2602 100644
--- a/01-stacks/4.3.0.json
+++ b/01-stacks/4.3.0.json
@@ -77,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.3.0",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -112,7 +112,7 @@
},
"FROM": "docker.io/umr1283/umr1283:4.3.0",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/01-stacks/4.3.1.json b/01-stacks/4.3.1.json
index fc0ae9f..624677d 100644
--- a/01-stacks/4.3.1.json
+++ b/01-stacks/4.3.1.json
@@ -55,8 +55,7 @@
],
"CMD": "[\"R\"]",
"tags": [
- "docker.io/umr1283/r-ver:4.3.1",
- "docker.io/umr1283/r-ver:latest"
+ "docker.io/umr1283/r-ver:4.3.1"
],
"platforms": [
"linux/amd64",
@@ -78,9 +77,9 @@
"FROM": "docker.io/umr1283/r-ver:4.3.1",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -102,8 +101,7 @@
],
"CMD": "[\"R\"]",
"tags": [
- "docker.io/umr1283/umr1283:4.3.1",
- "docker.io/umr1283/umr1283:latest"
+ "docker.io/umr1283/umr1283:4.3.1"
]
},
{
@@ -114,15 +112,14 @@
},
"FROM": "docker.io/umr1283/umr1283:4.3.1",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
"CMD": "[\"/init\"]",
"EXPOSE": 8787,
"tags": [
- "docker.io/umr1283/rstudio:4.3.1",
- "docker.io/umr1283/rstudio:latest"
+ "docker.io/umr1283/rstudio:4.3.1"
]
},
{
@@ -139,8 +136,7 @@
"CMD": "[\"/init\"]",
"EXPOSE": 3838,
"tags": [
- "docker.io/umr1283/shiny:4.3.1",
- "docker.io/umr1283/shiny:latest"
+ "docker.io/umr1283/shiny:4.3.1"
]
}
]
diff --git a/01-stacks/4.3.2.json b/01-stacks/4.3.2.json
new file mode 100644
index 0000000..f6f4ada
--- /dev/null
+++ b/01-stacks/4.3.2.json
@@ -0,0 +1,147 @@
+{
+ "ordered": true,
+ "TAG": "4.3.2",
+ "LABEL": "org.opencontainers.image.licenses=\"GPL-3.0\" \\\n org.opencontainers.image.source=\"https://github.com/umr1283/docker-versioned\" \\\n org.opencontainers.image.authors=\"Mickaël Canouil \"",
+ "group": [
+ {
+ "default": [
+ {
+ "targets": [
+ "r-ver"
+ ]
+ }
+ ],
+ "umr": [
+ {
+ "targets": [
+ "umr1283"
+ ]
+ }
+ ],
+ "server": [
+ {
+ "targets": [
+ "rstudio",
+ "shiny"
+ ]
+ }
+ ]
+ }
+ ],
+ "stack": [
+ {
+ "IMAGE": "r-ver",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/r-ver",
+ "org.opencontainers.image.description": "Reproducible builds with predefined version of R"
+ },
+ "FROM": "docker.io/library/debian:bullseye",
+ "ENV": {
+ "R_VERSION": "4.3.2",
+ "R_HOME": "/usr/local/lib/R",
+ "CRAN": "https://cran.r-project.org",
+ "LANG": "en_GB.UTF-8",
+ "TZ": "Etc/UTC"
+ },
+ "COPY": "assets /docker_scripts",
+ "RUN": [
+ "chmod --recursive +x /docker_scripts",
+ "/docker_scripts/install_lang.sh",
+ "/docker_scripts/install_r.sh",
+ "/docker_scripts/install_git.sh",
+ "/docker_scripts/install_gitlfs.sh",
+ "/docker_scripts/install_python.sh",
+ "/docker_scripts/install_msfonts.sh"
+ ],
+ "CMD": "[\"R\"]",
+ "tags": [
+ "docker.io/umr1283/r-ver:4.3.2",
+ "docker.io/umr1283/r-ver:latest"
+ ],
+ "platforms": [
+ "linux/amd64",
+ "linux/arm64"
+ ],
+ "cache-from": [
+ "docker.io/umr1283/r-ver:4.3.2"
+ ],
+ "cache-to": [
+ "type=inline"
+ ]
+ },
+ {
+ "IMAGE": "umr1283",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/umr1283",
+ "org.opencontainers.image.description": "Reproducible builds with predefined version of R and some (genetics) tools"
+ },
+ "FROM": "docker.io/umr1283/r-ver:4.3.2",
+ "ENV": {
+ "UMR1283_VERSION": "1.10.4",
+ "PANDOC_VERSION": "3.1.9",
+ "BCFTOOLS_VERSION": "1.15.1",
+ "QUARTO_VERSION": "1.4.464",
+ "ODBC_VERSION": "8.0.27",
+ "S6_VERSION": "v2.2.0.3"
+ },
+ "COPY": "assets /docker_scripts",
+ "RUN": [
+ "chmod --recursive +x /docker_scripts",
+ "/docker_scripts/install_libs.sh",
+ "/docker_scripts/install_pandoc.sh",
+ "/docker_scripts/install_odbc.sh",
+ "/docker_scripts/install_s6v2.sh",
+ "/docker_scripts/install_crossmap.sh",
+ "/docker_scripts/install_bcftools.sh",
+ "/docker_scripts/install_vcftools.sh",
+ "/docker_scripts/install_qtltools.sh",
+ "/docker_scripts/install_r_packages.sh",
+ "/docker_scripts/install_r_umr1283.sh",
+ "/docker_scripts/install_quarto.sh",
+ "/docker_scripts/set_bash_default.sh"
+ ],
+ "CMD": "[\"R\"]",
+ "tags": [
+ "docker.io/umr1283/umr1283:4.3.2",
+ "docker.io/umr1283/umr1283:latest"
+ ]
+ },
+ {
+ "IMAGE": "rstudio",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/rstudio",
+ "org.opencontainers.image.description": "RStudio server for umr1283 image"
+ },
+ "FROM": "docker.io/umr1283/umr1283:4.3.2",
+ "ENV": {
+ "RSTUDIO_VERSION": "2023.09.1+494",
+ "PATH": "/usr/lib/rstudio-server/bin:$PATH"
+ },
+ "RUN": "/docker_scripts/install_rstudio.sh",
+ "CMD": "[\"/init\"]",
+ "EXPOSE": 8787,
+ "tags": [
+ "docker.io/umr1283/rstudio:4.3.2",
+ "docker.io/umr1283/rstudio:latest"
+ ]
+ },
+ {
+ "IMAGE": "shiny",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/shiny",
+ "org.opencontainers.image.description": "Shiny server for umr1283 image"
+ },
+ "FROM": "docker.io/umr1283/umr1283:4.3.2",
+ "ENV": {
+ "SHINY_SERVER_VERSION": "latest"
+ },
+ "RUN": "/docker_scripts/install_shiny_server.sh",
+ "CMD": "[\"/init\"]",
+ "EXPOSE": 3838,
+ "tags": [
+ "docker.io/umr1283/shiny:4.3.2",
+ "docker.io/umr1283/shiny:latest"
+ ]
+ }
+ ]
+}
diff --git a/01-stacks/devel.json b/01-stacks/devel.json
index fba3716..5dae898 100644
--- a/01-stacks/devel.json
+++ b/01-stacks/devel.json
@@ -64,9 +64,9 @@
"FROM": "docker.io/umr1283/r-ver:devel",
"ENV": {
"UMR1283_VERSION": "1.10.4",
- "PANDOC_VERSION": "3.1.8",
+ "PANDOC_VERSION": "3.1.9",
"BCFTOOLS_VERSION": "1.15.1",
- "QUARTO_VERSION": "1.4.395",
+ "QUARTO_VERSION": "1.4.464",
"ODBC_VERSION": "8.0.27",
"S6_VERSION": "v2.2.0.3"
},
@@ -96,7 +96,7 @@
},
"FROM": "docker.io/umr1283/umr1283:devel",
"ENV": {
- "RSTUDIO_VERSION": "2023.09.0+463",
+ "RSTUDIO_VERSION": "2023.09.1+494",
"PATH": "/usr/lib/rstudio-server/bin:$PATH"
},
"RUN": "/docker_scripts/install_rstudio.sh",
diff --git a/02-dockerfiles/r-ver_4.3.2.Dockerfile b/02-dockerfiles/r-ver_4.3.2.Dockerfile
new file mode 100644
index 0000000..3705e13
--- /dev/null
+++ b/02-dockerfiles/r-ver_4.3.2.Dockerfile
@@ -0,0 +1,24 @@
+FROM docker.io/library/debian:bullseye
+
+LABEL org.opencontainers.image.licenses="GPL-3.0" \
+ org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
+ org.opencontainers.image.authors="Mickaël Canouil "
+
+ENV R_VERSION=4.3.2
+ENV R_HOME=/usr/local/lib/R
+ENV CRAN=https://cran.r-project.org
+ENV LANG=en_GB.UTF-8
+ENV TZ=Etc/UTC
+
+COPY assets /docker_scripts
+
+RUN chmod --recursive +x /docker_scripts
+RUN /docker_scripts/install_lang.sh
+RUN /docker_scripts/install_r.sh
+RUN /docker_scripts/install_git.sh
+RUN /docker_scripts/install_gitlfs.sh
+RUN /docker_scripts/install_python.sh
+RUN /docker_scripts/install_msfonts.sh
+
+CMD ["R"]
+
diff --git a/02-dockerfiles/rstudio_4.0.0.Dockerfile b/02-dockerfiles/rstudio_4.0.0.Dockerfile
index cc65f9b..dc1938a 100644
--- a/02-dockerfiles/rstudio_4.0.0.Dockerfile
+++ b/02-dockerfiles/rstudio_4.0.0.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.0.1.Dockerfile b/02-dockerfiles/rstudio_4.0.1.Dockerfile
index 8dfd3b6..9cdfc6b 100644
--- a/02-dockerfiles/rstudio_4.0.1.Dockerfile
+++ b/02-dockerfiles/rstudio_4.0.1.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.0.2.Dockerfile b/02-dockerfiles/rstudio_4.0.2.Dockerfile
index e96be43..68e26f2 100644
--- a/02-dockerfiles/rstudio_4.0.2.Dockerfile
+++ b/02-dockerfiles/rstudio_4.0.2.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.0.3.Dockerfile b/02-dockerfiles/rstudio_4.0.3.Dockerfile
index 29e10ed..017f39a 100644
--- a/02-dockerfiles/rstudio_4.0.3.Dockerfile
+++ b/02-dockerfiles/rstudio_4.0.3.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.0.4.Dockerfile b/02-dockerfiles/rstudio_4.0.4.Dockerfile
index 8e77976..8a9f072 100644
--- a/02-dockerfiles/rstudio_4.0.4.Dockerfile
+++ b/02-dockerfiles/rstudio_4.0.4.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.0.5.Dockerfile b/02-dockerfiles/rstudio_4.0.5.Dockerfile
index 0487d34..55a67da 100644
--- a/02-dockerfiles/rstudio_4.0.5.Dockerfile
+++ b/02-dockerfiles/rstudio_4.0.5.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.1.0.Dockerfile b/02-dockerfiles/rstudio_4.1.0.Dockerfile
index 6103b25..c6cbb1f 100644
--- a/02-dockerfiles/rstudio_4.1.0.Dockerfile
+++ b/02-dockerfiles/rstudio_4.1.0.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.1.1.Dockerfile b/02-dockerfiles/rstudio_4.1.1.Dockerfile
index ca6a3da..ec490ab 100644
--- a/02-dockerfiles/rstudio_4.1.1.Dockerfile
+++ b/02-dockerfiles/rstudio_4.1.1.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.1.2.Dockerfile b/02-dockerfiles/rstudio_4.1.2.Dockerfile
index 66547a7..ced175d 100644
--- a/02-dockerfiles/rstudio_4.1.2.Dockerfile
+++ b/02-dockerfiles/rstudio_4.1.2.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.1.3.Dockerfile b/02-dockerfiles/rstudio_4.1.3.Dockerfile
index 1d21d85..ced67d7 100644
--- a/02-dockerfiles/rstudio_4.1.3.Dockerfile
+++ b/02-dockerfiles/rstudio_4.1.3.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.2.0.Dockerfile b/02-dockerfiles/rstudio_4.2.0.Dockerfile
index 02faef9..494a485 100644
--- a/02-dockerfiles/rstudio_4.2.0.Dockerfile
+++ b/02-dockerfiles/rstudio_4.2.0.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.2.1.Dockerfile b/02-dockerfiles/rstudio_4.2.1.Dockerfile
index 5887425..719eea5 100644
--- a/02-dockerfiles/rstudio_4.2.1.Dockerfile
+++ b/02-dockerfiles/rstudio_4.2.1.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.2.2.Dockerfile b/02-dockerfiles/rstudio_4.2.2.Dockerfile
index 1d457d5..77e24b1 100644
--- a/02-dockerfiles/rstudio_4.2.2.Dockerfile
+++ b/02-dockerfiles/rstudio_4.2.2.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.2.3.Dockerfile b/02-dockerfiles/rstudio_4.2.3.Dockerfile
index 1a5e6cf..ad09887 100644
--- a/02-dockerfiles/rstudio_4.2.3.Dockerfile
+++ b/02-dockerfiles/rstudio_4.2.3.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.3.0.Dockerfile b/02-dockerfiles/rstudio_4.3.0.Dockerfile
index 9247541..e60e353 100644
--- a/02-dockerfiles/rstudio_4.3.0.Dockerfile
+++ b/02-dockerfiles/rstudio_4.3.0.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.3.1.Dockerfile b/02-dockerfiles/rstudio_4.3.1.Dockerfile
index eff7f8b..dec4fe7 100644
--- a/02-dockerfiles/rstudio_4.3.1.Dockerfile
+++ b/02-dockerfiles/rstudio_4.3.1.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/rstudio_4.3.2.Dockerfile b/02-dockerfiles/rstudio_4.3.2.Dockerfile
new file mode 100644
index 0000000..a3ef0ac
--- /dev/null
+++ b/02-dockerfiles/rstudio_4.3.2.Dockerfile
@@ -0,0 +1,15 @@
+FROM docker.io/umr1283/umr1283:4.3.2
+
+LABEL org.opencontainers.image.licenses="GPL-3.0" \
+ org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
+ org.opencontainers.image.authors="Mickaël Canouil "
+
+ENV RSTUDIO_VERSION=2023.09.1+494
+ENV PATH=/usr/lib/rstudio-server/bin:$PATH
+
+RUN /docker_scripts/install_rstudio.sh
+
+EXPOSE 8787
+
+CMD ["/init"]
+
diff --git a/02-dockerfiles/rstudio_devel.Dockerfile b/02-dockerfiles/rstudio_devel.Dockerfile
index 4499c04..4759a0a 100644
--- a/02-dockerfiles/rstudio_devel.Dockerfile
+++ b/02-dockerfiles/rstudio_devel.Dockerfile
@@ -4,7 +4,7 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
org.opencontainers.image.authors="Mickaël Canouil "
-ENV RSTUDIO_VERSION=2023.09.0+463
+ENV RSTUDIO_VERSION=2023.09.1+494
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /docker_scripts/install_rstudio.sh
diff --git a/02-dockerfiles/shiny_4.3.2.Dockerfile b/02-dockerfiles/shiny_4.3.2.Dockerfile
new file mode 100644
index 0000000..17b30f8
--- /dev/null
+++ b/02-dockerfiles/shiny_4.3.2.Dockerfile
@@ -0,0 +1,14 @@
+FROM docker.io/umr1283/umr1283:4.3.2
+
+LABEL org.opencontainers.image.licenses="GPL-3.0" \
+ org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
+ org.opencontainers.image.authors="Mickaël Canouil "
+
+ENV SHINY_SERVER_VERSION=latest
+
+RUN /docker_scripts/install_shiny_server.sh
+
+EXPOSE 3838
+
+CMD ["/init"]
+
diff --git a/02-dockerfiles/umr1283_4.0.0.Dockerfile b/02-dockerfiles/umr1283_4.0.0.Dockerfile
index 53c99ac..d5e6699 100644
--- a/02-dockerfiles/umr1283_4.0.0.Dockerfile
+++ b/02-dockerfiles/umr1283_4.0.0.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.0.1.Dockerfile b/02-dockerfiles/umr1283_4.0.1.Dockerfile
index 8d9466a..64d4097 100644
--- a/02-dockerfiles/umr1283_4.0.1.Dockerfile
+++ b/02-dockerfiles/umr1283_4.0.1.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.0.2.Dockerfile b/02-dockerfiles/umr1283_4.0.2.Dockerfile
index 81e7790..9be3273 100644
--- a/02-dockerfiles/umr1283_4.0.2.Dockerfile
+++ b/02-dockerfiles/umr1283_4.0.2.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.0.3.Dockerfile b/02-dockerfiles/umr1283_4.0.3.Dockerfile
index c5173a3..0a7d7b2 100644
--- a/02-dockerfiles/umr1283_4.0.3.Dockerfile
+++ b/02-dockerfiles/umr1283_4.0.3.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.0.4.Dockerfile b/02-dockerfiles/umr1283_4.0.4.Dockerfile
index 78e656d..10e40ac 100644
--- a/02-dockerfiles/umr1283_4.0.4.Dockerfile
+++ b/02-dockerfiles/umr1283_4.0.4.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.0.5.Dockerfile b/02-dockerfiles/umr1283_4.0.5.Dockerfile
index f68903b..4e19911 100644
--- a/02-dockerfiles/umr1283_4.0.5.Dockerfile
+++ b/02-dockerfiles/umr1283_4.0.5.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.1.0.Dockerfile b/02-dockerfiles/umr1283_4.1.0.Dockerfile
index f6a1677..6392075 100644
--- a/02-dockerfiles/umr1283_4.1.0.Dockerfile
+++ b/02-dockerfiles/umr1283_4.1.0.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.1.1.Dockerfile b/02-dockerfiles/umr1283_4.1.1.Dockerfile
index 039fcf2..42e9acf 100644
--- a/02-dockerfiles/umr1283_4.1.1.Dockerfile
+++ b/02-dockerfiles/umr1283_4.1.1.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.1.2.Dockerfile b/02-dockerfiles/umr1283_4.1.2.Dockerfile
index b9f0e03..513f76a 100644
--- a/02-dockerfiles/umr1283_4.1.2.Dockerfile
+++ b/02-dockerfiles/umr1283_4.1.2.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.1.3.Dockerfile b/02-dockerfiles/umr1283_4.1.3.Dockerfile
index b5060d2..974fffe 100644
--- a/02-dockerfiles/umr1283_4.1.3.Dockerfile
+++ b/02-dockerfiles/umr1283_4.1.3.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.2.0.Dockerfile b/02-dockerfiles/umr1283_4.2.0.Dockerfile
index 3ba2f55..52b5c7a 100644
--- a/02-dockerfiles/umr1283_4.2.0.Dockerfile
+++ b/02-dockerfiles/umr1283_4.2.0.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.2.1.Dockerfile b/02-dockerfiles/umr1283_4.2.1.Dockerfile
index 877ae80..2a3686d 100644
--- a/02-dockerfiles/umr1283_4.2.1.Dockerfile
+++ b/02-dockerfiles/umr1283_4.2.1.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.2.2.Dockerfile b/02-dockerfiles/umr1283_4.2.2.Dockerfile
index 48089f5..80d65fc 100644
--- a/02-dockerfiles/umr1283_4.2.2.Dockerfile
+++ b/02-dockerfiles/umr1283_4.2.2.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.2.3.Dockerfile b/02-dockerfiles/umr1283_4.2.3.Dockerfile
index 0cc9c60..ffea793 100644
--- a/02-dockerfiles/umr1283_4.2.3.Dockerfile
+++ b/02-dockerfiles/umr1283_4.2.3.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.3.0.Dockerfile b/02-dockerfiles/umr1283_4.3.0.Dockerfile
index a735ffd..6b24ef3 100644
--- a/02-dockerfiles/umr1283_4.3.0.Dockerfile
+++ b/02-dockerfiles/umr1283_4.3.0.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.3.1.Dockerfile b/02-dockerfiles/umr1283_4.3.1.Dockerfile
index 8bc0139..a404456 100644
--- a/02-dockerfiles/umr1283_4.3.1.Dockerfile
+++ b/02-dockerfiles/umr1283_4.3.1.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/02-dockerfiles/umr1283_4.3.2.Dockerfile b/02-dockerfiles/umr1283_4.3.2.Dockerfile
new file mode 100644
index 0000000..e1a740c
--- /dev/null
+++ b/02-dockerfiles/umr1283_4.3.2.Dockerfile
@@ -0,0 +1,31 @@
+FROM docker.io/umr1283/r-ver:4.3.2
+
+LABEL org.opencontainers.image.licenses="GPL-3.0" \
+ org.opencontainers.image.source="https://github.com/umr1283/docker-versioned" \
+ org.opencontainers.image.authors="Mickaël Canouil "
+
+ENV UMR1283_VERSION=1.10.4
+ENV PANDOC_VERSION=3.1.9
+ENV BCFTOOLS_VERSION=1.15.1
+ENV QUARTO_VERSION=1.4.464
+ENV ODBC_VERSION=8.0.27
+ENV S6_VERSION=v2.2.0.3
+
+COPY assets /docker_scripts
+
+RUN chmod --recursive +x /docker_scripts
+RUN /docker_scripts/install_libs.sh
+RUN /docker_scripts/install_pandoc.sh
+RUN /docker_scripts/install_odbc.sh
+RUN /docker_scripts/install_s6v2.sh
+RUN /docker_scripts/install_crossmap.sh
+RUN /docker_scripts/install_bcftools.sh
+RUN /docker_scripts/install_vcftools.sh
+RUN /docker_scripts/install_qtltools.sh
+RUN /docker_scripts/install_r_packages.sh
+RUN /docker_scripts/install_r_umr1283.sh
+RUN /docker_scripts/install_quarto.sh
+RUN /docker_scripts/set_bash_default.sh
+
+CMD ["R"]
+
diff --git a/02-dockerfiles/umr1283_devel.Dockerfile b/02-dockerfiles/umr1283_devel.Dockerfile
index b6d7bd7..b989abe 100644
--- a/02-dockerfiles/umr1283_devel.Dockerfile
+++ b/02-dockerfiles/umr1283_devel.Dockerfile
@@ -5,9 +5,9 @@ LABEL org.opencontainers.image.licenses="GPL-3.0" \
org.opencontainers.image.authors="Mickaël Canouil "
ENV UMR1283_VERSION=1.10.4
-ENV PANDOC_VERSION=3.1.8
+ENV PANDOC_VERSION=3.1.9
ENV BCFTOOLS_VERSION=1.15.1
-ENV QUARTO_VERSION=1.4.395
+ENV QUARTO_VERSION=1.4.464
ENV ODBC_VERSION=8.0.27
ENV S6_VERSION=v2.2.0.3
diff --git a/04-bakefiles/4.3.1.docker-bake.json b/04-bakefiles/4.3.1.docker-bake.json
index 15da035..627b206 100644
--- a/04-bakefiles/4.3.1.docker-bake.json
+++ b/04-bakefiles/4.3.1.docker-bake.json
@@ -35,8 +35,7 @@
"org.opencontainers.image.base.name": "docker.io/library/debian:bullseye"
},
"tags": [
- "docker.io/umr1283/r-ver:4.3.1",
- "docker.io/umr1283/r-ver:latest"
+ "docker.io/umr1283/r-ver:4.3.1"
],
"platforms": [
"linux/amd64",
@@ -58,8 +57,7 @@
"org.opencontainers.image.base.name": "docker.io/umr1283/r-ver:4.3.1"
},
"tags": [
- "docker.io/umr1283/umr1283:4.3.1",
- "docker.io/umr1283/umr1283:latest"
+ "docker.io/umr1283/umr1283:4.3.1"
],
"platforms": [
"linux/amd64"
@@ -80,8 +78,7 @@
"org.opencontainers.image.base.name": "docker.io/umr1283/umr1283:4.3.1"
},
"tags": [
- "docker.io/umr1283/rstudio:4.3.1",
- "docker.io/umr1283/rstudio:latest"
+ "docker.io/umr1283/rstudio:4.3.1"
],
"platforms": [
"linux/amd64"
@@ -102,8 +99,7 @@
"org.opencontainers.image.base.name": "docker.io/umr1283/umr1283:4.3.1"
},
"tags": [
- "docker.io/umr1283/shiny:4.3.1",
- "docker.io/umr1283/shiny:latest"
+ "docker.io/umr1283/shiny:4.3.1"
],
"platforms": [
"linux/amd64"
diff --git a/04-bakefiles/4.3.2.docker-bake.json b/04-bakefiles/4.3.2.docker-bake.json
new file mode 100644
index 0000000..6ad3489
--- /dev/null
+++ b/04-bakefiles/4.3.2.docker-bake.json
@@ -0,0 +1,119 @@
+{
+ "group": [
+ {
+ "default": [
+ {
+ "targets": [
+ "r-ver"
+ ]
+ }
+ ],
+ "umr": [
+ {
+ "targets": [
+ "umr1283"
+ ]
+ }
+ ],
+ "server": [
+ {
+ "targets": [
+ "rstudio",
+ "shiny"
+ ]
+ }
+ ]
+ }
+ ],
+ "target": {
+ "r-ver": {
+ "context": "./",
+ "dockerfile": "02-dockerfiles/r-ver_4.3.2.Dockerfile",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/r-ver",
+ "org.opencontainers.image.description": "Reproducible builds with predefined version of R",
+ "org.opencontainers.image.base.name": "docker.io/library/debian:bullseye"
+ },
+ "tags": [
+ "docker.io/umr1283/r-ver:4.3.2",
+ "docker.io/umr1283/r-ver:latest"
+ ],
+ "platforms": [
+ "linux/amd64",
+ "linux/arm64"
+ ],
+ "cache-from": [
+ "docker.io/umr1283/r-ver:4.3.2"
+ ],
+ "cache-to": [
+ "type=inline"
+ ]
+ },
+ "umr1283": {
+ "context": "./",
+ "dockerfile": "02-dockerfiles/umr1283_4.3.2.Dockerfile",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/umr1283",
+ "org.opencontainers.image.description": "Reproducible builds with predefined version of R and some (genetics) tools",
+ "org.opencontainers.image.base.name": "docker.io/umr1283/r-ver:4.3.2"
+ },
+ "tags": [
+ "docker.io/umr1283/umr1283:4.3.2",
+ "docker.io/umr1283/umr1283:latest"
+ ],
+ "platforms": [
+ "linux/amd64"
+ ],
+ "cache-from": [
+ ""
+ ],
+ "cache-to": [
+ ""
+ ]
+ },
+ "rstudio": {
+ "context": "./",
+ "dockerfile": "02-dockerfiles/rstudio_4.3.2.Dockerfile",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/rstudio",
+ "org.opencontainers.image.description": "RStudio server for umr1283 image",
+ "org.opencontainers.image.base.name": "docker.io/umr1283/umr1283:4.3.2"
+ },
+ "tags": [
+ "docker.io/umr1283/rstudio:4.3.2",
+ "docker.io/umr1283/rstudio:latest"
+ ],
+ "platforms": [
+ "linux/amd64"
+ ],
+ "cache-from": [
+ ""
+ ],
+ "cache-to": [
+ ""
+ ]
+ },
+ "shiny": {
+ "context": "./",
+ "dockerfile": "02-dockerfiles/shiny_4.3.2.Dockerfile",
+ "labels": {
+ "org.opencontainers.image.title": "umr1283/shiny",
+ "org.opencontainers.image.description": "Shiny server for umr1283 image",
+ "org.opencontainers.image.base.name": "docker.io/umr1283/umr1283:4.3.2"
+ },
+ "tags": [
+ "docker.io/umr1283/shiny:4.3.2",
+ "docker.io/umr1283/shiny:latest"
+ ],
+ "platforms": [
+ "linux/amd64"
+ ],
+ "cache-from": [
+ ""
+ ],
+ "cache-to": [
+ ""
+ ]
+ }
+ }
+}
diff --git a/05-matrix/github_action_matrix_all.json b/05-matrix/github_action_matrix_all.json
index 1def80d..8b5db39 100644
--- a/05-matrix/github_action_matrix_all.json
+++ b/05-matrix/github_action_matrix_all.json
@@ -1,4 +1,4 @@
{
- "r_version": ["4.0.0", "4.0.1", "4.0.2", "4.0.3", "4.0.4", "4.0.5", "4.1.0", "4.1.1", "4.1.2", "4.1.3", "4.2.0", "4.2.1", "4.2.2", "4.2.3", "4.3.0", "4.3.1"],
+ "r_version": ["4.0.0", "4.0.1", "4.0.2", "4.0.3", "4.0.4", "4.0.5", "4.1.0", "4.1.1", "4.1.2", "4.1.3", "4.2.0", "4.2.1", "4.2.2", "4.2.3", "4.3.0", "4.3.1", "4.3.2"],
"group": ["default"]
}
diff --git a/05-matrix/github_action_matrix_all_server.json b/05-matrix/github_action_matrix_all_server.json
index 8b8b44a..4368710 100644
--- a/05-matrix/github_action_matrix_all_server.json
+++ b/05-matrix/github_action_matrix_all_server.json
@@ -1,4 +1,4 @@
{
- "r_version": ["4.0.0", "4.0.1", "4.0.2", "4.0.3", "4.0.4", "4.0.5", "4.1.0", "4.1.1", "4.1.2", "4.1.3", "4.2.0", "4.2.1", "4.2.2", "4.2.3", "4.3.0", "4.3.1"],
+ "r_version": ["4.0.0", "4.0.1", "4.0.2", "4.0.3", "4.0.4", "4.0.5", "4.1.0", "4.1.1", "4.1.2", "4.1.3", "4.2.0", "4.2.1", "4.2.2", "4.2.3", "4.3.0", "4.3.1", "4.3.2"],
"group": ["server"]
}
diff --git a/05-matrix/github_action_matrix_all_umr.json b/05-matrix/github_action_matrix_all_umr.json
index d6a4f82..7cce837 100644
--- a/05-matrix/github_action_matrix_all_umr.json
+++ b/05-matrix/github_action_matrix_all_umr.json
@@ -1,4 +1,4 @@
{
- "r_version": ["4.0.0", "4.0.1", "4.0.2", "4.0.3", "4.0.4", "4.0.5", "4.1.0", "4.1.1", "4.1.2", "4.1.3", "4.2.0", "4.2.1", "4.2.2", "4.2.3", "4.3.0", "4.3.1"],
+ "r_version": ["4.0.0", "4.0.1", "4.0.2", "4.0.3", "4.0.4", "4.0.5", "4.1.0", "4.1.1", "4.1.2", "4.1.3", "4.2.0", "4.2.1", "4.2.2", "4.2.3", "4.3.0", "4.3.1", "4.3.2"],
"group": ["umr"]
}
diff --git a/05-matrix/github_action_matrix_latest.json b/05-matrix/github_action_matrix_latest.json
index 5149e21..f2b9122 100644
--- a/05-matrix/github_action_matrix_latest.json
+++ b/05-matrix/github_action_matrix_latest.json
@@ -1,4 +1,4 @@
{
- "r_version": ["4.3.1"],
+ "r_version": ["4.3.2"],
"group": ["default"]
}