diff --git a/config/workflow.yaml b/config/workflow.yaml
index 8979fcd2..9d8422cf 100644
--- a/config/workflow.yaml
+++ b/config/workflow.yaml
@@ -316,5 +316,5 @@ workflows:
     versions:
       - name: 4.2.4
         path: 4.2.4/dragen-instrument-run-fastq-to-ora-pipeline__4.2.4.cwl
-        md5sum: da57d2421f8ffb47ec102dd02a4d5db7
+        md5sum: 9df445c3fdd3b101f1061ae0a29d7fa0
     categories: []
diff --git a/tools/dragen-instrument-run-fastq-to-ora/4.2.4/dragen-instrument-run-fastq-to-ora__4.2.4.cwl b/tools/dragen-instrument-run-fastq-to-ora/4.2.4/dragen-instrument-run-fastq-to-ora__4.2.4.cwl
index fcd0ceb9..c7d105b4 100644
--- a/tools/dragen-instrument-run-fastq-to-ora/4.2.4/dragen-instrument-run-fastq-to-ora__4.2.4.cwl
+++ b/tools/dragen-instrument-run-fastq-to-ora/4.2.4/dragen-instrument-run-fastq-to-ora__4.2.4.cwl
@@ -78,7 +78,7 @@ requirements:
           
           (
             echo "\$(date -Iseconds): Collecting md5sums of gzipped fastq files" 1>&2 && \\
-            bash "$(get_fastq_gz_md5sum_files_script_path())" > "$(inputs.output_directory_name)/fastq_gzipped.md5.txt" && \\
+            bash "$(get_fastq_raw_md5sum_files_script_path())" > "$(inputs.output_directory_name)/fastq_raw.md5.txt" && \\
             echo "\$(date -Iseconds): Md5sum complete" 1>&2 && \\
             echo "\$(date -Iseconds): Collecting file sizes of gzipped fastq files" 1>&2 && \\
             bash "$(get_fastq_gz_file_sizes_script_path())" > "$(inputs.output_directory_name)/fastq_gzipped.filesizes.tsv" && \\
diff --git a/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.cwljs b/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.cwljs
index e2ff6391..a7a43dfb 100644
--- a/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.cwljs
+++ b/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.cwljs
@@ -78,11 +78,11 @@ function get_new_fastq_list_csv_script_path() {
     */
     return "generate-new-fastq-list-csv.sh";
 }
-function get_fastq_gz_md5sum_files_script_path() {
+function get_fastq_raw_md5sum_files_script_path() {
     /*
     Get the script path to generating the md5sum for each fastq gzip file
     */
-    return "generate-md5sum-for-fastq-gz-files.sh";
+    return "generate-md5sum-for-fastq-raw-files.sh";
 }
 function get_fastq_gz_file_sizes_script_path() {
     /*
@@ -469,42 +469,42 @@ function generate_ora_mv_files_script(fastq_list_rows, input_directory, output_d
         contents:ora_mv_files_script
     };
 }
-function generate_fastq_gz_md5sum_files_script(fastq_list_rows, input_directory) {
+function get_md5sum_fastq_raw_script(fastq_list_rows, input_directory) {
     /*
     Generate the fastq gzip md5sum files script command, results are printed to stdout
     */
-    var get_md5sum_fastq_gz_script = "#!/usr/bin/env bash\n\n";
-    get_md5sum_fastq_gz_script += "# Exit on failure\n";
-    get_md5sum_fastq_gz_script += "set -euo pipefail\n\n";
+    var get_md5sum_fastq_raw_script_contents = "#!/usr/bin/env bash\n\n";
+    get_md5sum_fastq_raw_script_contents += "# Exit on failure\n";
+    get_md5sum_fastq_raw_script_contents += "set -euo pipefail\n\n";
     /*  Initialise the bash array */
-    get_md5sum_fastq_gz_script += "# Get fastq gz paths\n";
-    get_md5sum_fastq_gz_script += "FASTQ_GZ_PATHS=(\n";
+    get_md5sum_fastq_raw_script_contents += "# Get fastq gz paths\n";
+    get_md5sum_fastq_raw_script_contents += "FASTQ_GZ_PATHS=(\n";
     /*  Iterate over all files */
     for (var _i = 0, fastq_list_rows_4 = fastq_list_rows; _i < fastq_list_rows_4.length; _i++) {
         var fastq_list_row = fastq_list_rows_4[_i];
         /*  Confirm read 1 is a file type */
         if ("class" in fastq_list_row.read_1 && fastq_list_row.read_1.class === "File") {
             /*  Add relative path of read 1 */
-            get_md5sum_fastq_gz_script += "  \"".concat(fastq_list_row.read_1.path.replace(input_directory.path + "/", ''), "\" \\\n");
+            get_md5sum_fastq_raw_script_contents += "  \"".concat(fastq_list_row.read_1.path.replace(input_directory.path + "/", ''), "\" \\\n");
         }
         /*  Confirm read 2 is a file type */
         if (fastq_list_row.read_2 !== null && "class" in fastq_list_row.read_2 && fastq_list_row.read_2.class === "File") {
-            get_md5sum_fastq_gz_script += "  \"".concat(fastq_list_row.read_2.path.replace(input_directory.path + "/", ''), "\" \\\n");
+            get_md5sum_fastq_raw_script_contents += "  \"".concat(fastq_list_row.read_2.path.replace(input_directory.path + "/", ''), "\" \\\n");
         }
     }
     /*  Complete the bash array */
-    get_md5sum_fastq_gz_script += ")\n\n";
+    get_md5sum_fastq_raw_script_contents += ")\n\n";
     /*  Build the for loop */
-    get_md5sum_fastq_gz_script += "# Generate md5sums for the input fastq gz files\n";
-    get_md5sum_fastq_gz_script += "for fastq_gz_path in \"${FASTQ_GZ_PATHS[@]}\"; do\n";
-    get_md5sum_fastq_gz_script += "  full_input_path=\"".concat(input_directory.path, "/${fastq_gz_path}\"\n");
-    get_md5sum_fastq_gz_script += "  md5sum \"${full_input_path}\" | sed \"s%${full_input_path}%${fastq_gz_path}%\"\n";
-    get_md5sum_fastq_gz_script += "done\n\n";
-    get_md5sum_fastq_gz_script += "# Md5sum script complete\n";
+    get_md5sum_fastq_raw_script_contents += "# Generate md5sums for the input fastq gz files\n";
+    get_md5sum_fastq_raw_script_contents += "for fastq_gz_path in \"${FASTQ_GZ_PATHS[@]}\"; do\n";
+    get_md5sum_fastq_raw_script_contents += "  full_input_path=\"".concat(input_directory.path, "/${fastq_gz_path}\"\n");
+    get_md5sum_fastq_raw_script_contents += "  zcat \"${full_input_path}\" | md5sum | sed \"s%-%${fastq_gz_path/* .gz/}%\"\n"; */
+    get_md5sum_fastq_raw_script_contents += "done\n\n";
+    get_md5sum_fastq_raw_script_contents += "# Md5sum script complete\n";
     return {
         class:"File",
-        basename:get_fastq_gz_md5sum_files_script_path(),
-        contents:get_md5sum_fastq_gz_script
+        basename:get_fastq_raw_md5sum_files_script_path(),
+        contents:get_md5sum_fastq_raw_script_contents
     };
 }
 function generate_fastq_gz_file_sizes_script(fastq_list_rows, input_directory) {
@@ -814,8 +814,8 @@ function generate_ora_mount_points(input_run, output_directory_path, sample_id_l
     });
     /*  Generate the script to generate the md5sums of the input gzipped fastq files */
     e.push({
-        "entryname":get_fastq_gz_md5sum_files_script_path(),
-        "entry":generate_fastq_gz_md5sum_files_script(fastq_list_rows, input_run)
+        "entryname":get_fastq_raw_md5sum_files_script_path(),
+        "entry":get_md5sum_fastq_raw_script(fastq_list_rows, input_run)
     });
     /*  Generate the script to generate the filesizes of the input gzipped fastq files */
     e.push({
diff --git a/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.js b/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.js
index 19bef223..8f9adcbf 100644
--- a/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.js
+++ b/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.js
@@ -12,7 +12,7 @@ exports.get_fastq_list_csv_path = get_fastq_list_csv_path;
 exports.get_tumor_fastq_list_csv_path = get_tumor_fastq_list_csv_path;
 exports.get_ora_mv_files_script_path = get_ora_mv_files_script_path;
 exports.get_new_fastq_list_csv_script_path = get_new_fastq_list_csv_script_path;
-exports.get_fastq_gz_md5sum_files_script_path = get_fastq_gz_md5sum_files_script_path;
+exports.get_fastq_raw_md5sum_files_script_path = get_fastq_raw_md5sum_files_script_path;
 exports.get_fastq_gz_file_sizes_script_path = get_fastq_gz_file_sizes_script_path;
 exports.get_fastq_ora_md5sum_files_script_path = get_fastq_ora_md5sum_files_script_path;
 exports.get_fastq_ora_file_sizes_script_path = get_fastq_ora_file_sizes_script_path;
@@ -30,7 +30,7 @@ exports.get_mask_dir = get_mask_dir;
 exports.get_ref_scratch_dir = get_ref_scratch_dir;
 exports.get_ora_intermediate_output_dir = get_ora_intermediate_output_dir;
 exports.generate_ora_mv_files_script = generate_ora_mv_files_script;
-exports.generate_fastq_gz_md5sum_files_script = generate_fastq_gz_md5sum_files_script;
+exports.get_md5sum_fastq_raw_script = get_md5sum_fastq_raw_script;
 exports.generate_fastq_gz_file_sizes_script = generate_fastq_gz_file_sizes_script;
 exports.generate_fastq_ora_md5sum_files_script = generate_fastq_ora_md5sum_files_script;
 exports.generate_fastq_ora_file_sizes_script = generate_fastq_ora_file_sizes_script;
@@ -120,11 +120,11 @@ function get_new_fastq_list_csv_script_path() {
     */
     return "generate-new-fastq-list-csv.sh";
 }
-function get_fastq_gz_md5sum_files_script_path() {
+function get_fastq_raw_md5sum_files_script_path() {
     /*
     Get the script path to generating the md5sum for each fastq gzip file
     */
-    return "generate-md5sum-for-fastq-gz-files.sh";
+    return "generate-md5sum-for-fastq-raw-files.sh";
 }
 function get_fastq_gz_file_sizes_script_path() {
     /*
@@ -511,42 +511,42 @@ function generate_ora_mv_files_script(fastq_list_rows, input_directory, output_d
         contents: ora_mv_files_script
     };
 }
-function generate_fastq_gz_md5sum_files_script(fastq_list_rows, input_directory) {
+function get_md5sum_fastq_raw_script(fastq_list_rows, input_directory) {
     /*
     Generate the fastq gzip md5sum files script command, results are printed to stdout
     */
-    var get_md5sum_fastq_gz_script = "#!/usr/bin/env bash\n\n";
-    get_md5sum_fastq_gz_script += "# Exit on failure\n";
-    get_md5sum_fastq_gz_script += "set -euo pipefail\n\n";
+    var get_md5sum_fastq_raw_script_contents = "#!/usr/bin/env bash\n\n";
+    get_md5sum_fastq_raw_script_contents += "# Exit on failure\n";
+    get_md5sum_fastq_raw_script_contents += "set -euo pipefail\n\n";
     // Initialise the bash array
-    get_md5sum_fastq_gz_script += "# Get fastq gz paths\n";
-    get_md5sum_fastq_gz_script += "FASTQ_GZ_PATHS=(\n";
+    get_md5sum_fastq_raw_script_contents += "# Get fastq gz paths\n";
+    get_md5sum_fastq_raw_script_contents += "FASTQ_GZ_PATHS=(\n";
     // Iterate over all files
     for (var _i = 0, fastq_list_rows_4 = fastq_list_rows; _i < fastq_list_rows_4.length; _i++) {
         var fastq_list_row = fastq_list_rows_4[_i];
         // Confirm read 1 is a file type
         if ("class_" in fastq_list_row.read_1 && fastq_list_row.read_1.class_ === cwl_ts_auto_1.File_class.FILE) {
             // Add relative path of read 1
-            get_md5sum_fastq_gz_script += "  \"".concat(fastq_list_row.read_1.path.replace(input_directory.path + "/", ''), "\" \\\n");
+            get_md5sum_fastq_raw_script_contents += "  \"".concat(fastq_list_row.read_1.path.replace(input_directory.path + "/", ''), "\" \\\n");
         }
         // Confirm read 2 is a file type
         if (fastq_list_row.read_2 !== null && "class_" in fastq_list_row.read_2 && fastq_list_row.read_2.class_ === cwl_ts_auto_1.File_class.FILE) {
-            get_md5sum_fastq_gz_script += "  \"".concat(fastq_list_row.read_2.path.replace(input_directory.path + "/", ''), "\" \\\n");
+            get_md5sum_fastq_raw_script_contents += "  \"".concat(fastq_list_row.read_2.path.replace(input_directory.path + "/", ''), "\" \\\n");
         }
     }
     // Complete the bash array
-    get_md5sum_fastq_gz_script += ")\n\n";
+    get_md5sum_fastq_raw_script_contents += ")\n\n";
     // Build the for loop
-    get_md5sum_fastq_gz_script += "# Generate md5sums for the input fastq gz files\n";
-    get_md5sum_fastq_gz_script += "for fastq_gz_path in \"${FASTQ_GZ_PATHS[@]}\"; do\n";
-    get_md5sum_fastq_gz_script += "  full_input_path=\"".concat(input_directory.path, "/${fastq_gz_path}\"\n");
-    get_md5sum_fastq_gz_script += "  md5sum \"${full_input_path}\" | sed \"s%${full_input_path}%${fastq_gz_path}%\"\n";
-    get_md5sum_fastq_gz_script += "done\n\n";
-    get_md5sum_fastq_gz_script += "# Md5sum script complete\n";
+    get_md5sum_fastq_raw_script_contents += "# Generate md5sums for the input fastq gz files\n";
+    get_md5sum_fastq_raw_script_contents += "for fastq_gz_path in \"${FASTQ_GZ_PATHS[@]}\"; do\n";
+    get_md5sum_fastq_raw_script_contents += "  full_input_path=\"".concat(input_directory.path, "/${fastq_gz_path}\"\n");
+    get_md5sum_fastq_raw_script_contents += "  zcat \"${full_input_path}\" | md5sum | sed \"s%-%${fastq_gz_path//.gz/}%\"\n";
+    get_md5sum_fastq_raw_script_contents += "done\n\n";
+    get_md5sum_fastq_raw_script_contents += "# Md5sum script complete\n";
     return {
         class_: cwl_ts_auto_1.File_class.FILE,
-        basename: get_fastq_gz_md5sum_files_script_path(),
-        contents: get_md5sum_fastq_gz_script
+        basename: get_fastq_raw_md5sum_files_script_path(),
+        contents: get_md5sum_fastq_raw_script_contents
     };
 }
 function generate_fastq_gz_file_sizes_script(fastq_list_rows, input_directory) {
@@ -856,8 +856,8 @@ function generate_ora_mount_points(input_run, output_directory_path, sample_id_l
     });
     // Generate the script to generate the md5sums of the input gzipped fastq files
     e.push({
-        "entryname": get_fastq_gz_md5sum_files_script_path(),
-        "entry": generate_fastq_gz_md5sum_files_script(fastq_list_rows, input_run)
+        "entryname": get_fastq_raw_md5sum_files_script_path(),
+        "entry": get_md5sum_fastq_raw_script(fastq_list_rows, input_run)
     });
     // Generate the script to generate the filesizes of the input gzipped fastq files
     e.push({
diff --git a/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.ts b/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.ts
index b0d042ae..f014a37f 100644
--- a/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.ts
+++ b/typescript-expressions/dragen-tools/4.0.3/dragen-tools__4.0.3.ts
@@ -112,11 +112,11 @@ export function get_new_fastq_list_csv_script_path(): string {
     */
     return "generate-new-fastq-list-csv.sh"
 }
-export function get_fastq_gz_md5sum_files_script_path(): string {
+export function get_fastq_raw_md5sum_files_script_path(): string {
     /*
     Get the script path to generating the md5sum for each fastq gzip file
     */
-    return "generate-md5sum-for-fastq-gz-files.sh"
+    return "generate-md5sum-for-fastq-raw-files.sh"
 }
 
 export function get_fastq_gz_file_sizes_script_path(): string {
@@ -566,48 +566,48 @@ export function generate_ora_mv_files_script(fastq_list_rows: FastqListRow[], in
 }
 
 
-export function generate_fastq_gz_md5sum_files_script(fastq_list_rows: FastqListRow[], input_directory: IDirectory): IFile {
+export function get_md5sum_fastq_raw_script(fastq_list_rows: FastqListRow[], input_directory: IDirectory): IFile {
     /*
     Generate the fastq gzip md5sum files script command, results are printed to stdout
     */
-    let get_md5sum_fastq_gz_script = "#!/usr/bin/env bash\n\n"
+    let get_md5sum_fastq_raw_script_contents = "#!/usr/bin/env bash\n\n"
 
-    get_md5sum_fastq_gz_script += `# Exit on failure\n`
-    get_md5sum_fastq_gz_script += `set -euo pipefail\n\n`
+    get_md5sum_fastq_raw_script_contents += `# Exit on failure\n`
+    get_md5sum_fastq_raw_script_contents += `set -euo pipefail\n\n`
 
     // Initialise the bash array
-    get_md5sum_fastq_gz_script += `# Get fastq gz paths\n`
-    get_md5sum_fastq_gz_script += `FASTQ_GZ_PATHS=(\n`
+    get_md5sum_fastq_raw_script_contents += `# Get fastq gz paths\n`
+    get_md5sum_fastq_raw_script_contents += `FASTQ_GZ_PATHS=(\n`
 
     // Iterate over all files
     for (let fastq_list_row of fastq_list_rows) {
         // Confirm read 1 is a file type
         if ("class_" in fastq_list_row.read_1 && fastq_list_row.read_1.class_ === File_class.FILE) {
             // Add relative path of read 1
-            get_md5sum_fastq_gz_script += `  "${fastq_list_row.read_1.path.replace(input_directory.path + "/", '')}" \\\n`
+            get_md5sum_fastq_raw_script_contents += `  "${fastq_list_row.read_1.path.replace(input_directory.path + "/", '')}" \\\n`
         }
         // Confirm read 2 is a file type
         if (fastq_list_row.read_2 !== null && "class_" in fastq_list_row.read_2 && fastq_list_row.read_2.class_ === File_class.FILE) {
-            get_md5sum_fastq_gz_script += `  "${fastq_list_row.read_2.path.replace(input_directory.path + "/", '')}" \\\n`
+            get_md5sum_fastq_raw_script_contents += `  "${fastq_list_row.read_2.path.replace(input_directory.path + "/", '')}" \\\n`
         }
     }
 
     // Complete the bash array
-    get_md5sum_fastq_gz_script += `)\n\n`
+    get_md5sum_fastq_raw_script_contents += `)\n\n`
 
     // Build the for loop
-    get_md5sum_fastq_gz_script += `# Generate md5sums for the input fastq gz files\n`
-    get_md5sum_fastq_gz_script += `for fastq_gz_path in "\${FASTQ_GZ_PATHS[@]}"; do\n`
-    get_md5sum_fastq_gz_script += `  full_input_path="${input_directory.path}/\${fastq_gz_path}"\n`
-    get_md5sum_fastq_gz_script += `  md5sum "\${full_input_path}" | sed "s%\${full_input_path}%\${fastq_gz_path}%"\n`
-    get_md5sum_fastq_gz_script += `done\n\n`
+    get_md5sum_fastq_raw_script_contents += `# Generate md5sums for the input fastq gz files\n`
+    get_md5sum_fastq_raw_script_contents += `for fastq_gz_path in "\${FASTQ_GZ_PATHS[@]}"; do\n`
+    get_md5sum_fastq_raw_script_contents += `  full_input_path="${input_directory.path}/\${fastq_gz_path}"\n`
+    get_md5sum_fastq_raw_script_contents += `  zcat "\${full_input_path}" | md5sum | sed "s%-%\${fastq_gz_path//.gz/}%"\n`
+    get_md5sum_fastq_raw_script_contents += `done\n\n`
 
-    get_md5sum_fastq_gz_script += `# Md5sum script complete\n`
+    get_md5sum_fastq_raw_script_contents += `# Md5sum script complete\n`
 
     return {
         class_: File_class.FILE,
-        basename: get_fastq_gz_md5sum_files_script_path(),
-        contents: get_md5sum_fastq_gz_script
+        basename: get_fastq_raw_md5sum_files_script_path(),
+        contents: get_md5sum_fastq_raw_script_contents
     }
 }
 
@@ -958,8 +958,8 @@ export function generate_ora_mount_points(input_run: IDirectory, output_director
 
     // Generate the script to generate the md5sums of the input gzipped fastq files
     e.push({
-        "entryname": get_fastq_gz_md5sum_files_script_path(),
-        "entry": generate_fastq_gz_md5sum_files_script(fastq_list_rows, input_run)
+        "entryname": get_fastq_raw_md5sum_files_script_path(),
+        "entry": get_md5sum_fastq_raw_script(fastq_list_rows, input_run)
     })
 
     // Generate the script to generate the filesizes of the input gzipped fastq files
diff --git a/typescript-expressions/dragen-tools/4.0.3/tests/data/generate-md5sum-for-fastq-gz-files.sh b/typescript-expressions/dragen-tools/4.0.3/tests/data/generate-md5sum-for-fastq-raw-files.sh
similarity index 84%
rename from typescript-expressions/dragen-tools/4.0.3/tests/data/generate-md5sum-for-fastq-gz-files.sh
rename to typescript-expressions/dragen-tools/4.0.3/tests/data/generate-md5sum-for-fastq-raw-files.sh
index 1ff64783..195eee4a 100644
--- a/typescript-expressions/dragen-tools/4.0.3/tests/data/generate-md5sum-for-fastq-gz-files.sh
+++ b/typescript-expressions/dragen-tools/4.0.3/tests/data/generate-md5sum-for-fastq-raw-files.sh
@@ -14,7 +14,7 @@ FASTQ_GZ_PATHS=(
 # Generate md5sums for the input fastq gz files
 for fastq_gz_path in "${FASTQ_GZ_PATHS[@]}"; do
   full_input_path="data/${fastq_gz_path}"
-  md5sum "${full_input_path}" | sed "s%${full_input_path}%${fastq_gz_path}%"
+  zcat "${full_input_path}" | md5sum | sed "s%-%${fastq_gz_path//.gz/}%"
 done
 
 # Md5sum script complete
diff --git a/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.js b/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.js
index 00d40fbc..10c57e7a 100644
--- a/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.js
+++ b/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.js
@@ -23,7 +23,7 @@ var TUMOR_FASTQ_LIST_CSV_FILE_PATH = "tests/data/tumor_fastq_list.csv";
 var ORA_FASTQ_LIST_CSV_FILE_PATH = "tests/data/fastq_list.ora.csv";
 var MV_ORA_FILE_PATH = "tests/data/mv-ora.sh";
 var GENERATE_NEW_FASTQ_LIST_CSV_SH_PATH = "tests/data/generate-new-fastq-list-csv.sh";
-var GENERATE_MD5SUM_FOR_FASTQ_GZ_FILES_SH_PATH = "tests/data/generate-md5sum-for-fastq-gz-files.sh";
+var GENERATE_MD5SUM_FOR_FASTQ_GZ_FILES_SH_PATH = "tests/data/generate-md5sum-for-fastq-raw-files.sh";
 var GENERATE_MD5SUM_FOR_FASTQ_ORA_FILES_SH_PATH = "tests/data/generate-md5sum-for-fastq-ora-files.sh";
 var GENERATE_FILE_SIZES_FOR_FASTQ_GZ_FILES_SH_PATH = "tests/data/generate-file-sizes-for-fastq-gz-files.sh";
 var GENERATE_FILE_SIZES_FOR_FASTQ_ORA_FILES_SH_PATH = "tests/data/generate-file-sizes-for-fastq-ora-files.sh";
@@ -184,7 +184,7 @@ var EXPECTED_ORA_NEW_FASTQ_LIST_CSV_SH_OUTPUT = {
 };
 var EXPECTED_MD5SUM_FOR_FASTQ_GZ_FILES_SH_OUTPUT = {
     class_: cwl_ts_auto_1.File_class.FILE,
-    basename: "generate-md5sum-for-fastq-gz-files.sh",
+    basename: "generate-md5sum-for-fastq-raw-files.sh",
     contents: (0, fs_1.readFileSync)(GENERATE_MD5SUM_FOR_FASTQ_GZ_FILES_SH_PATH, "utf8")
 };
 var EXPECTED_MD5SUM_FOR_FASTQ_ORA_FILES_SH_OUTPUT = {
@@ -343,7 +343,7 @@ describe('Test ora mount points', function () {
             "entry": EXPECTED_ORA_NEW_FASTQ_LIST_CSV_SH_OUTPUT
         },
         {
-            "entryname": "generate-md5sum-for-fastq-gz-files.sh",
+            "entryname": "generate-md5sum-for-fastq-raw-files.sh",
             "entry": EXPECTED_MD5SUM_FOR_FASTQ_GZ_FILES_SH_OUTPUT
         },
         {
diff --git a/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.ts b/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.ts
index 74bfe673..67d6e817 100644
--- a/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.ts
+++ b/typescript-expressions/dragen-tools/4.0.3/tests/dragen-tools__4.0.3.test.ts
@@ -40,7 +40,7 @@ const TUMOR_FASTQ_LIST_CSV_FILE_PATH = "tests/data/tumor_fastq_list.csv";
 const ORA_FASTQ_LIST_CSV_FILE_PATH = "tests/data/fastq_list.ora.csv"
 const MV_ORA_FILE_PATH = "tests/data/mv-ora.sh"
 const GENERATE_NEW_FASTQ_LIST_CSV_SH_PATH = "tests/data/generate-new-fastq-list-csv.sh"
-const GENERATE_MD5SUM_FOR_FASTQ_GZ_FILES_SH_PATH = "tests/data/generate-md5sum-for-fastq-gz-files.sh"
+const GENERATE_MD5SUM_FOR_FASTQ_GZ_FILES_SH_PATH = "tests/data/generate-md5sum-for-fastq-raw-files.sh"
 const GENERATE_MD5SUM_FOR_FASTQ_ORA_FILES_SH_PATH = "tests/data/generate-md5sum-for-fastq-ora-files.sh"
 const GENERATE_FILE_SIZES_FOR_FASTQ_GZ_FILES_SH_PATH = "tests/data/generate-file-sizes-for-fastq-gz-files.sh"
 const GENERATE_FILE_SIZES_FOR_FASTQ_ORA_FILES_SH_PATH = "tests/data/generate-file-sizes-for-fastq-ora-files.sh"
@@ -202,7 +202,7 @@ const EXPECTED_ORA_NEW_FASTQ_LIST_CSV_SH_OUTPUT: IFile = {
 };
 const EXPECTED_MD5SUM_FOR_FASTQ_GZ_FILES_SH_OUTPUT: IFile = {
     class_: File_class.FILE,
-    basename: "generate-md5sum-for-fastq-gz-files.sh",
+    basename: "generate-md5sum-for-fastq-raw-files.sh",
     contents: readFileSync(GENERATE_MD5SUM_FOR_FASTQ_GZ_FILES_SH_PATH, "utf8")
 };
 const EXPECTED_MD5SUM_FOR_FASTQ_ORA_FILES_SH_OUTPUT: IFile = {
@@ -370,7 +370,7 @@ describe('Test ora mount points', function () {
             "entry": EXPECTED_ORA_NEW_FASTQ_LIST_CSV_SH_OUTPUT
         },
         {
-            "entryname": "generate-md5sum-for-fastq-gz-files.sh",
+            "entryname": "generate-md5sum-for-fastq-raw-files.sh",
             "entry": EXPECTED_MD5SUM_FOR_FASTQ_GZ_FILES_SH_OUTPUT
         },
         {
diff --git a/typescript-expressions/dragen-tools/4.0.3/tests/summary.txt b/typescript-expressions/dragen-tools/4.0.3/tests/summary.txt
index 7035925f..81dece4b 100644
--- a/typescript-expressions/dragen-tools/4.0.3/tests/summary.txt
+++ b/typescript-expressions/dragen-tools/4.0.3/tests/summary.txt
@@ -1,4 +1,4 @@
-# Test started at 2024-10-30T14:42:54+11:00
+# Test started at 2024-11-15T15:25:57+11:00
 
 PASS tests/dragen-tools__4.0.3.test.js
   ● Console
@@ -43,7 +43,7 @@ Lines        : 88.31% ( 310/351 )
 Test Suites: 1 failed, 1 passed, 2 total
 Tests:       16 passed, 16 total
 Snapshots:   0 total
-Time:        1.592 s
+Time:        2.126 s
 Ran all test suites.
-# Test completed at 2024-10-30T14:42:57+11:00
+# Test completed at 2024-11-15T15:26:01+11:00