Discussions

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  Finding which of two nodes is closer to a focal node in a tree

  hyanwong asked Dec 3, 2022 in Q&A · Answered

  

  

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  Creating a mutation of a given frequency.

  NW-Anderson started Nov 1, 2022 in Ideas

  

  

  

  

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  Number of nodes (or equivalent) under a node

  hyanwong asked Sep 28, 2022 in Q&A · Answered

  

  

  

  

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  Using tskit to calculate pairwise genetic similarity among samples in a VCF file

  loukesio asked Nov 8, 2022 in Q&A · Unanswered

  

  

  

  

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  tskit's genetic_relatedness() versus eGRM (Fan et al. 2022)

  grahamgower asked Oct 11, 2022 in Q&A · Unanswered

  

  

  

  

  14
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  Removing topology above local roots

  hyanwong asked Sep 28, 2022 in Q&A · Unanswered

  

  

  

  

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  Can we sample genomes at a given time?

  silvewheat started Sep 22, 2022 in General

  

  

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  Is it possible to add a method to change ancestral allele after ARG was build.

  silvewheat started Sep 20, 2022 in General

  

  

  

  

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  Combined tree sequence of multiple chromosomes

  benekirsch asked Sep 26, 2022 in Q&A · Unanswered

  

  

  

  

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  Obtain a list of trees based on edge ID or node ID

  Proteios1998 asked Sep 14, 2022 in Q&A · Answered

  

  

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  Neat way to plot allele lineage count over time?

  hyanwong asked Sep 12, 2022 in Q&A · Unanswered

  

  

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  Null parents on sites with multiple mutations

  lkirk started Sep 7, 2022 in General

  

  

  

  

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  How to check if a tree sequence has "dangling nodes"

  hyanwong asked Sep 8, 2022 in Q&A · Unanswered

  

  

  

  

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  Traversing the ARG while identifying children

  hyanwong started Aug 23, 2022 in Show and tell

  

  

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  Save a mask in the tree sequence

  hyanwong started Jul 10, 2022 in General

  

  

  

  

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  Invariant site add issue with write_vcf()

  romieuj asked Jul 22, 2022 in Q&A · Unanswered

  

  

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  VCFs with Invariant/Monomorphic Sites

  ksamuk started Jul 17, 2022 in General

  

  

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  merging multiple tree sequences into a single demographic model

  mshpak76 asked Jul 18, 2022 in Q&A · Answered

  

  

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  Is tskit+tsinfer+tsdate applicable to sex chromosome?

  silvewheat asked Apr 4, 2022 in Q&A · Answered

  

  

  

  

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  getting a subset of node ids from tables

  alxsimon asked May 20, 2022 in Q&A · Answered

  

  

  

  

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  Displaying samples from different populations as offset nodes

  Visualisation This issue addresses visualisation

  hyanwong started Jun 23, 2022 in Show and tell

  

  

  

  

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  sampling from subpopulations

  mshpak76 asked Jul 4, 2022 in Q&A · Answered

  

  

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  When simplification increases the number of edges (by removing edges through unary nodes)

  hyanwong started Jan 11, 2022 in General

  

  

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  Drawing a tree with subset of sample nodes and/or larger dots for sample nodes

  janaobsteter asked Jun 30, 2022 in Q&A · Answered

  

  

  

  

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  Can you compare branch length and per site Fst

  hyanwong asked Jun 7, 2022 in Q&A · Unanswered

  

  

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