From ccf96753ff798e61b6b5174ed1c15f1b7c9d136c Mon Sep 17 00:00:00 2001
From: Mike Love <mikelove@users.noreply.github.com>
Date: Sat, 8 Jun 2024 08:58:06 -0400
Subject: [PATCH] better information about summarize: assignRanges

---
 DESCRIPTION         | 2 +-
 R/summarizeToGene.R | 6 ++++--
 R/tximeta.R         | 3 +--
 3 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 1a039b7..6989002 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: tximeta
-Version: 1.23.1
+Version: 1.23.2
 Title: Transcript Quantification Import with Automatic Metadata
 Description: Transcript quantification import from Salmon and
     other quantifiers with automatic attachment of transcript ranges
diff --git a/R/summarizeToGene.R b/R/summarizeToGene.R
index 19f201e..aa79c85 100644
--- a/R/summarizeToGene.R
+++ b/R/summarizeToGene.R
@@ -50,9 +50,11 @@ summarizeToGene.SummarizedExperiment <- function(object,
 
   # note here about how ranges are assigned
   if (assignRanges == "abundant") {
-    message("gene ranges assigned by isoform abundance, see `assignRanges`")
+    message("assignRanges='abundant': gene ranges assigned by isoform abundance
+  see details at: ?summarizeToGene,SummarizedExperiment-method")
   } else {
-    message("gene ranges assigned by total range of isoforms, see `assignRanges`")
+    message("assignRanges='range': gene ranges assigned by total range of isoforms
+  see details at: ?summarizeToGene,SummarizedExperiment-method")
   }
   
   txi.gene <- summarizeToGene(object=txi, tx2gene=tx2gene, varReduce=varReduce, ...)
diff --git a/R/tximeta.R b/R/tximeta.R
index dd087bc..04f43b9 100644
--- a/R/tximeta.R
+++ b/R/tximeta.R
@@ -47,11 +47,10 @@
 #'
 #' @author Michael I. Love, Charlotte Soneson, Peter Hickey, Rob Patro
 #' 
-#' @docType package
 #' @name tximeta-package
 #' @aliases tximeta-package
 #' @keywords package
-NULL
+"_PACKAGE"
 
 #' Import transcript quantification with metadata
 #'