From 293cf06cb5005ea261efcbbfbac184b831a3dcbe Mon Sep 17 00:00:00 2001 From: Mike Love Date: Fri, 27 Sep 2024 11:30:53 -0400 Subject: [PATCH] bump --- DESCRIPTION | 4 ++-- man/tximeta.Rd | 4 ++++ 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 0bfe241..21707f6 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: tximeta -Version: 1.23.3 +Version: 1.23.4 Title: Transcript Quantification Import with Automatic Metadata Description: Transcript quantification import from Salmon and other quantifiers with automatic attachment of transcript ranges @@ -29,5 +29,5 @@ biocViews: Annotation, GenomeAnnotation, DataImport, Preprocessing, RNASeq, SingleCell, Transcriptomics, Transcription, GeneExpression, FunctionalGenomics, ReproducibleResearch, ReportWriting, ImmunoOncology -RoxygenNote: 7.3.1 +RoxygenNote: 7.3.2 Encoding: UTF-8 diff --git a/man/tximeta.Rd b/man/tximeta.Rd index d05227a..f645fc0 100644 --- a/man/tximeta.Rd +++ b/man/tximeta.Rd @@ -14,6 +14,7 @@ tximeta( markDuplicateTxps = FALSE, cleanDuplicateTxps = FALSE, customMetaInfo = NULL, + skipFtp = FALSE, ... ) } @@ -71,6 +72,9 @@ JSON files. These should contain the SHA-256 hash of the reference transcripts with the \code{index_seq_hash} tag (see details in vignette).} +\item{skipFtp}{whether to avoid \code{ftp://} in case of +firewall, default is FALSE} + \item{...}{arguments passed to \code{tximport}} } \value{