From 02f496d86a1d2f76f9f4578237150e9e56ec544c Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Tue, 1 Aug 2023 12:05:45 +0000 Subject: [PATCH] [status] 2023-08-01 12:05:45 UTC --- README.md | 114 +++++++++--------- index.html | 339 ++++++++++++++++++++++++++--------------------------- repos.csv | 72 ++++++------ 3 files changed, 262 insertions(+), 263 deletions(-) diff --git a/README.md b/README.md index dfeb0d9..dc4bf35 100644 --- a/README.md +++ b/README.md @@ -2,62 +2,61 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-07-31 12:05:25 UTC +2023-08-01 12:03:52 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 442 | 16 | 41 | 69 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 442 | 16 | 41 | 69 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550994) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550998) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550999) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550995) | c531a7 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 344 | 15 | 61 | 94 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) | d89ca6 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 249 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 249 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5709141983) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5709184284) | b73034 | -| [theislab/scib](https://github.com/theislab/scib) | 223 | 17 | 26 | 43 | [![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) | 96556a | -| [theislab/scib](https://github.com/theislab/scib) | 223 | 17 | 26 | 43 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/5647380554) | ed3e28 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) | 96fcf8 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5709094141) | c50240 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) | d1a9e6 | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 96 | 6 | 19 | 19 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/5055712904) | b56718 | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 95 | 7 | 13 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20%F0%9F%90%8D%20distributions%20%F0%9F%93%A6%20to%20PyPI/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5654215460) [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5654215452) | 67d968 | -| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747238) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747236) | 0404ba | -| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/ncem/actions/runs/1764433339) | cd0ea2 | -| [theislab/destiny](https://github.com/theislab/destiny) | 62 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | -| [theislab/moscot](https://github.com/theislab/moscot) | 60 | 4 | 28 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5705114769) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/5709146122) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/5709114337) | 1b0312 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5706879425) | 79624a | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5188674947) | 926737 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) | b50f73 | -| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 37 | 7 | 13 | 23 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4713027178) | 23d8fc | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5710106712) | 9bad01 | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/.github/workflows/test.yml/badge.svg)](https://github.com/theislab/batchglm/actions/runs/1954556605) | aa879d | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 20 | 4 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466677) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466682) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5709578010) | 28b974 | -| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 20 | 4 | [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) | 32aa90 | -| [theislab/mubind](https://github.com/theislab/mubind) | 16 | 2 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/pre-commit/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279924) [![](https://github.com/theislab/mubind/workflows/Test/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279925) | 0e727d | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 11 | 6 | 7 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5656030130) | 0c8a61 | -| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 0 | 1 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/5410454626) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/5410454619) | 4ce121 | -| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 0 | 1 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | -| [theislab/multigrate](https://github.com/theislab/multigrate) | 10 | 3 | 4 | 3 | [![](https://github.com/theislab/multigrate/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multigrate/actions/runs/5622093023) [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/5622093026) | 7a9432 | -| [theislab/hadge](https://github.com/theislab/hadge) | 8 | 2 | 1 | 2 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/5666025319) [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/5666025318) | 150d49 | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5709154408) | bd10c2 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 5 | 1 | 2 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5709164770) | f520dc | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | -| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/Labeler/badge.svg)](https://github.com/theislab/augurpy/actions/runs/1443279795) [![](https://github.com/theislab/augurpy/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/augurpy/actions/runs/1680337694) | 1ea5dc | -| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235258) [![](https://github.com/theislab/augurpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235256) | 8a5e8a | -| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 12 | 0 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5661196605) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5661196604) | 1d015d | -| [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | -| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 4 | 0 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 0 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5714394550) | dd67e6 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814130) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814133) | 2e23ba | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | -| [theislab/sfaira-portal](https://github.com/theislab/sfaira-portal) | 0 | 4 | 2 | 0 | [![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) | a06e26 | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 442 | 16 | 41 | 69 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 442 | 16 | 41 | 69 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550994) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550998) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550999) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5647550995) | c531a7 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 344 | 15 | 60 | 95 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) | d89ca6 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 19 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 19 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5724809972) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5724809978) | de5894 | +| [theislab/scib](https://github.com/theislab/scib) | 223 | 17 | 26 | 43 | [![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) | 96556a | +| [theislab/scib](https://github.com/theislab/scib) | 223 | 17 | 26 | 43 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/5647380554) | ed3e28 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) | 96fcf8 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5720925448) | c50240 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 130 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) | d1a9e6 | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 96 | 6 | 19 | 19 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/5055712904) | b56718 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 95 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20%F0%9F%90%8D%20distributions%20%F0%9F%93%A6%20to%20PyPI/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5654215460) | 67d968 | +| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747238) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747236) | 0404ba | +| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 92 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/ncem/actions/runs/1764433339) | cd0ea2 | +| [theislab/destiny](https://github.com/theislab/destiny) | 62 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | +| [theislab/moscot](https://github.com/theislab/moscot) | 60 | 4 | 29 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5705114769) | 1b0312 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 38 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5720901334) | 2783cd | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 38 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 38 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5188674947) | 926737 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 46 | 5 | 38 | 6 | [![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) | b50f73 | +| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 37 | 7 | 13 | 23 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149434) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149425) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149440) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149428) | 08d382 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4713027178) | 23d8fc | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 36 | 5 | 27 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/.github/workflows/test.yml/badge.svg)](https://github.com/theislab/batchglm/actions/runs/1954556605) | aa879d | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | +| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 20 | 4 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466677) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466682) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5721484772) | 28b974 | +| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 20 | 4 | [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) | 32aa90 | +| [theislab/mubind](https://github.com/theislab/mubind) | 16 | 2 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/pre-commit/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279924) [![](https://github.com/theislab/mubind/workflows/Test/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279925) | 0e727d | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 11 | 6 | 7 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5724370595) | 67e066 | +| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 0 | 1 | [![](https://github.com/theislab/geome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/geome/actions/runs/5410454626) [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/5410454619) | 4ce121 | +| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 0 | 1 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/hadge](https://github.com/theislab/hadge) | 8 | 2 | 1 | 2 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/5666025319) [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/5666025318) | 150d49 | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5709154408) | bd10c2 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 5 | 1 | 2 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5709164770) | f520dc | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | +| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/Labeler/badge.svg)](https://github.com/theislab/augurpy/actions/runs/1443279795) [![](https://github.com/theislab/augurpy/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/augurpy/actions/runs/1680337694) | 1ea5dc | +| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235258) [![](https://github.com/theislab/augurpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235256) | 8a5e8a | +| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 12 | 0 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5661196605) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5661196604) | 1d015d | +| [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | +| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 4 | 0 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 0 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5726471513) | b84fd8 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814130) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814133) | 2e23ba | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | +| [theislab/sfaira-portal](https://github.com/theislab/sfaira-portal) | 0 | 4 | 2 | 0 | [![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) | a06e26 | ## Repos without Github Actions @@ -70,9 +69,9 @@ GitHub Dashboard | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 162 | 9 | 104 | 22 | | [theislab/paga](https://github.com/theislab/paga) | 162 | 10 | 21 | 29 | | [theislab/kBET](https://github.com/theislab/kBET) | 130 | 9 | 8 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 117 | 9 | 8 | 20 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 117 | 9 | 9 | 20 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 102 | 5 | 5 | 7 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 57 | 5 | 5 | 10 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 57 | 5 | 6 | 10 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 50 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 50 | 7 | 2 | 6 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 40 | 7 | 0 | 6 | @@ -94,6 +93,7 @@ GitHub Dashboard | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 11 | 5 | 1 | 6 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 11 | 7 | 0 | 8 | | [theislab/GWAS-scRNAseq-Integration](https://github.com/theislab/GWAS-scRNAseq-Integration) | 10 | 5 | 0 | 12 | +| [theislab/multigrate](https://github.com/theislab/multigrate) | 10 | 3 | 5 | 3 | | [theislab/scAnalysisTutorial](https://github.com/theislab/scAnalysisTutorial) | 10 | 3 | 0 | 3 | | [theislab/campa](https://github.com/theislab/campa) | 9 | 4 | 4 | 3 | | [theislab/diffxpy_tutorials](https://github.com/theislab/diffxpy_tutorials) | 9 | 8 | 4 | 2 | diff --git a/index.html b/index.html index 462e4dc..1f83361 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 045c567..8a7a22b 100644 --- a/repos.csv +++ b/repos.csv @@ -25,10 +25,10 @@ theislab,MRGR_stress_analysis,theislab/MRGR_stress_analysis,0,3,0,0,FALSE,https: theislab,MetaMap,theislab/MetaMap,11,7,0,8,FALSE,https://github.com/theislab/MetaMap,11,NA,NA,NA theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA theislab,PathReg,theislab/PathReg,7,3,0,0,FALSE,https://github.com/theislab/PathReg,7,NA,NA,NA -theislab,anndata2ri,theislab/anndata2ri,95,7,13,14,FALSE,https://github.com/theislab/anndata2ri,95,67d96815672a3d43932023c597177d46c5df9b4b,"[pre-commit.ci] pre-commit autoupdate (#118) +theislab,anndata2ri,theislab/anndata2ri,95,7,14,14,FALSE,https://github.com/theislab/anndata2ri,95,67d96815672a3d43932023c597177d46c5df9b4b,"[pre-commit.ci] pre-commit autoupdate (#118) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> -Co-authored-by: Philipp A ",[![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20%F0%9F%90%8D%20distributions%20%F0%9F%93%A6%20to%20PyPI/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5654215460) [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5654215452) +Co-authored-by: Philipp A ",[![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20%F0%9F%90%8D%20distributions%20%F0%9F%93%A6%20to%20PyPI/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5654215460) theislab,archmap_admin,theislab/archmap_admin,0,3,0,0,FALSE,https://github.com/theislab/archmap_admin,0,NA,NA,NA theislab,astrocytes_reprogramming_analysis,theislab/astrocytes_reprogramming_analysis,0,5,0,0,FALSE,https://github.com/theislab/astrocytes_reprogramming_analysis,0,NA,NA,NA theislab,atlas-feature-selection-benchmark,theislab/atlas-feature-selection-benchmark,0,2,4,0,FALSE,https://github.com/theislab/atlas-feature-selection-benchmark,0,NA,NA,NA @@ -74,11 +74,12 @@ Important cookietemple template update 2.1.1 released!",[![](https://github.com/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,3cb12b5e3c71749003718d8d1768e3b9790d8544,minor fixes,[![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) theislab,campa,theislab/campa,9,4,4,3,FALSE,https://github.com/theislab/campa,9,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,249,8,18,30,FALSE,https://github.com/theislab/cellrank,249,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) -theislab,cellrank,theislab/cellrank,249,8,18,30,FALSE,https://github.com/theislab/cellrank,249,b73034321abc8779280b2fa760342ba254ddc056,"Update `_heatmap.py` (#1096) +theislab,cellrank,theislab/cellrank,250,8,19,30,FALSE,https://github.com/theislab/cellrank,250,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) +theislab,cellrank,theislab/cellrank,250,8,19,30,FALSE,https://github.com/theislab/cellrank,250,de5894e9749df653f72d3a92b996257e432ed553,"Update overview figures (#1105) -Add argument `gene_order` to `heatmap` function to plot genes in a -user-defined order.",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5709141983) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5709184284) +* Update figures + +* Update notebook overview figures",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5724809972) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5724809978) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,0,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,0,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge @@ -86,7 +87,7 @@ into `main`.",[![](https://github.com/theislab/cellrank2_reproducibility/workflo theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,bd10c2c1a7f7ddf5674403997bc2704533b85367,Update overview figures,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5709154408) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,12,2,0,7,FALSE,https://github.com/theislab/cellrank_reproducibility,12,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,4,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,4,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,57,5,5,10,FALSE,https://github.com/theislab/chemCPA,57,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,57,5,6,10,FALSE,https://github.com/theislab/chemCPA,57,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,3,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA @@ -102,12 +103,25 @@ theislab,diffxpy,theislab/diffxpy,162,9,104,22,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,9,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,9,NA,NA,NA theislab,disent,theislab/disent,5,3,0,0,FALSE,https://github.com/theislab/disent,5,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,46,5,35,6,FALSE,https://github.com/theislab/ehrapy,46,79624a2f9c858c6b1a635710a5c5b5d769981c29,Merge branch 'development' of https://github.com/theislab/ehrapy into feature/202303_onestep_dowhy,[![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5706879425) -theislab,ehrapy,theislab/ehrapy,46,5,35,6,FALSE,https://github.com/theislab/ehrapy,46,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,46,5,38,6,FALSE,https://github.com/theislab/ehrapy,46,2783cd4783bd6094018c70a67cad5f33593662cc,"[DEPENDABOT]: Bump medcat from 1.7.0 to 1.8.0 + +Bumps [medcat](https://github.com/CogStack/MedCAT) from 1.7.0 to 1.8.0. +- [Release notes](https://github.com/CogStack/MedCAT/releases) +- [Commits](https://github.com/CogStack/MedCAT/compare/v1.7.0...1.8.0) + +--- +updated-dependencies: +- dependency-name: medcat + dependency-type: direct:production + update-type: version-update:semver-minor +... + +Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5720901334) +theislab,ehrapy,theislab/ehrapy,46,5,38,6,FALSE,https://github.com/theislab/ehrapy,46,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,46,5,35,6,FALSE,https://github.com/theislab/ehrapy,46,926737be520472682144a8a74252b8f490367717,Bump version from 0.4.0 to 0.5.0,[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5188674947) -theislab,ehrapy,theislab/ehrapy,46,5,35,6,FALSE,https://github.com/theislab/ehrapy,46,b50f734e21ffe5f9c1db7a5a5c25f1c5d071543f,cookietemple sync,[![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) +theislab,ehrapy,theislab/ehrapy,46,5,38,6,FALSE,https://github.com/theislab/ehrapy,46,926737be520472682144a8a74252b8f490367717,Bump version from 0.4.0 to 0.5.0,[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5188674947) +theislab,ehrapy,theislab/ehrapy,46,5,38,6,FALSE,https://github.com/theislab/ehrapy,46,b50f734e21ffe5f9c1db7a5a5c25f1c5d071543f,cookietemple sync,[![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,4,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,4,cb7707afc4523a317cfb30c1d101091adfaa44cd,Add mimic-2 to CI,[![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) theislab,ehrapy-site,theislab/ehrapy-site,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA @@ -123,7 +137,7 @@ theislab,geome,theislab/geome,10,3,0,1,FALSE,https://github.com/theislab/geome,1 theislab,geome,theislab/geome,10,3,0,1,FALSE,https://github.com/theislab/geome,10,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,dd67e69fbe0fdfb61584df92ebd0f3586ddbd101,[status] 2023-07-30 12:06:32 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5714394550) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,b84fd8df4d7a81f1ad6d9bb915c306401c7f6af9,[status] 2023-07-31 12:07:16 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5726471513) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,3,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,2,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -155,10 +169,10 @@ theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/ theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA theislab,kBET,theislab/kBET,130,9,8,23,FALSE,https://github.com/theislab/kBET,130,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA -theislab,moscot,theislab/moscot,60,4,28,6,FALSE,https://github.com/theislab/moscot,60,1b031272130d36d8d5866ca1ea862b27998a1f01,"[pre-commit.ci] pre-commit autoupdate (#588) +theislab,moscot,theislab/moscot,60,4,29,6,FALSE,https://github.com/theislab/moscot,60,1b031272130d36d8d5866ca1ea862b27998a1f01,"[pre-commit.ci] pre-commit autoupdate (#588) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> -Co-authored-by: Giovanni Palla <25887487+giovp@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5705114769) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/5709146122) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/5709114337) +Co-authored-by: Giovanni Palla <25887487+giovp@users.noreply.github.com>",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5705114769) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,0,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,1,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,1,NA,NA,NA theislab,moscot_not,theislab/moscot_not,2,2,8,0,FALSE,https://github.com/theislab/moscot_not,2,NA,NA,NA @@ -172,9 +186,7 @@ theislab,mubind,theislab/mubind,16,2,30,0,FALSE,https://github.com/theislab/mubi Precommit",[![](https://github.com/theislab/mubind/workflows/pre-commit/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279924) [![](https://github.com/theislab/mubind/workflows/Test/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279925) theislab,multicpa,theislab/multicpa,12,3,0,2,FALSE,https://github.com/theislab/multicpa,12,NA,NA,NA theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,1,3,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,1,NA,NA,NA -theislab,multigrate,theislab/multigrate,10,3,4,3,FALSE,https://github.com/theislab/multigrate,10,7a94325573803b48ea54cca3cdb0c08f156f3b58,"Merge pull request #22 from theislab/pre-commit-ci-update-config - -[pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/multigrate/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multigrate/actions/runs/5622093023) [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/5622093026) +theislab,multigrate,theislab/multigrate,10,3,5,3,FALSE,https://github.com/theislab/multigrate,10,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,1,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,1,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA @@ -202,6 +214,7 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,162,10,21,29,FALSE,https://github.com/theislab/paga,162,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA +theislab,pertpy,theislab/pertpy,36,5,27,7,FALSE,https://github.com/theislab/pertpy,36,08d382181395e1f56116c83e6a0cebfc3fe292c8,poetry update,[![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149434) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149425) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149440) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5716149428) theislab,pertpy,theislab/pertpy,36,5,27,7,FALSE,https://github.com/theislab/pertpy,36,23d8fcf8fdb34dfb98a873f2cde62e3f8e063d88,"Add pypi nox Signed-off-by: zethson ",[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4713027178) @@ -209,19 +222,6 @@ theislab,pertpy,theislab/pertpy,36,5,27,7,FALSE,https://github.com/theislab/pert theislab,pertpy,theislab/pertpy,36,5,27,7,FALSE,https://github.com/theislab/pertpy,36,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,36,5,27,7,FALSE,https://github.com/theislab/pertpy,36,9bad0112e04efa9b000de188d9c7c59b50c16eee,"[DEPENDABOT]: Bump flake8 from 6.0.0 to 6.1.0 - -Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0. -- [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0) - ---- -updated-dependencies: -- dependency-name: flake8 - dependency-type: direct:development - update-type: version-update:semver-minor -... - -Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5710106712) theislab,pertpy-datasets,theislab/pertpy-datasets,1,4,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,3,5,1,4,FALSE,https://github.com/theislab/pertpy-tutorials,3,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,0,2,0,0,FALSE,https://github.com/theislab/perturbation-metrics,0,NA,NA,NA @@ -232,7 +232,7 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,5,7,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,102,5,5,7,FALSE,https://github.com/theislab/sc-pert,102,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,25,5,5,2,FALSE,https://github.com/theislab/scArches-reproducibility,25,NA,NA,NA -theislab,scCODA,theislab/scCODA,117,9,8,20,FALSE,https://github.com/theislab/scCODA,117,NA,NA,NA +theislab,scCODA,theislab/scCODA,117,9,9,20,FALSE,https://github.com/theislab/scCODA,117,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,6,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,6,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,1,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,1,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,5,3,1,2,FALSE,https://github.com/theislab/scPoli_reproduce,5,NA,NA,NA @@ -244,7 +244,9 @@ theislab,scanpy-in-R,theislab/scanpy-in-R,13,3,1,0,FALSE,https://github.com/thei theislab,scanpy.org,theislab/scanpy.org,0,7,1,0,FALSE,https://github.com/theislab/scanpy.org,0,NA,NA,NA theislab,scanpy_neighbors,theislab/scanpy_neighbors,0,3,0,1,FALSE,https://github.com/theislab/scanpy_neighbors,0,NA,NA,NA theislab,scanpy_squidpy_demo_2021,theislab/scanpy_squidpy_demo_2021,2,4,0,0,FALSE,https://github.com/theislab/scanpy_squidpy_demo_2021,2,NA,NA,NA -theislab,scanpydoc,theislab/scanpydoc,11,6,7,5,FALSE,https://github.com/theislab/scanpydoc,11,0c8a615f4740ca548af4878d2c62fb3ca99811d4,Skip buggy docutils versions,[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5656030130) +theislab,scanpydoc,theislab/scanpydoc,11,6,7,5,FALSE,https://github.com/theislab/scanpydoc,11,67e066f2c5e9451c4ea388d82c76642bc4492f79,"[pre-commit.ci] pre-commit autoupdate (#82) + +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5724370595) theislab,scarches,theislab/scarches,265,14,31,45,FALSE,https://github.com/theislab/scarches,265,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,5,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,5,NA,NA,NA @@ -254,12 +256,12 @@ theislab,scib,theislab/scib,223,17,26,43,FALSE,https://github.com/theislab/scib, theislab,scib,theislab/scib,223,17,26,43,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/5647380554) theislab,scib-pipeline,theislab/scib-pipeline,37,7,13,23,FALSE,https://github.com/theislab/scib-pipeline,37,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) theislab,scib-reproducibility,theislab/scib-reproducibility,39,6,2,10,FALSE,https://github.com/theislab/scib-reproducibility,39,NA,NA,NA -theislab,scvelo,theislab/scvelo,344,15,61,94,FALSE,https://github.com/theislab/scvelo,344,d89ca6aecbe93256fbcdd8a521fdee2b9f2a673a,Add metabolic labeling inference (#1103),[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) +theislab,scvelo,theislab/scvelo,344,15,60,95,FALSE,https://github.com/theislab/scvelo,344,d89ca6aecbe93256fbcdd8a521fdee2b9f2a673a,Add metabolic labeling inference (#1103),[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) theislab,scvelo_notebooks,theislab/scvelo_notebooks,23,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,23,NA,NA,NA theislab,sfaira,theislab/sfaira,130,8,177,13,FALSE,https://github.com/theislab/sfaira,130,96fcf8f55c9865728c8032bec35e8d9e836e7001,Merge branch 'dev' into data/d10_1101_2022_03_10_483747,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) theislab,sfaira,theislab/sfaira,130,8,177,13,FALSE,https://github.com/theislab/sfaira,130,c50240a74530e614ab7681bf9c63b04cb815b361,"Merge pull request #589 from theislab/release -Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5709094141) +Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5720925448) theislab,sfaira,theislab/sfaira,130,8,177,13,FALSE,https://github.com/theislab/sfaira,130,d1a9e6c4c7974abe685263206671a452f8e84c6f,fix miura organ annotation,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,a06e268a61598ca1b7244d52f2e6246f48d6541d,fix typo,[![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA @@ -385,7 +387,7 @@ theislab,single-cell-tutorial,theislab/single-cell-tutorial,1110,30,21,412,FALSE theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,18,3,20,4,FALSE,https://github.com/theislab/spapros,18,28b974a43a8745d7cb0518b55fd68ce63b044ced,"Merge pull request #266 from theislab/development -New version release",[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466677) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466682) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5709578010) +New version release",[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466677) [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466682) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5721484772) theislab,spapros,theislab/spapros,18,3,20,4,FALSE,https://github.com/theislab/spapros,18,32aa90e29ff70afa4c001d47e80bcbd6e4d96d19,Bump version from 0.1.2 to 0.1.3,[![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,0,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
theislab/scvelo 344 1561946095 d89ca6
theislab/cellrank249250 81819 30 1287de
theislab/cellrank249250 81819 30 -b73034 +de5894
theislab/scib 8 177 13 c50240
theislab/anndata2ri 95 713 14 -14 67d968
theislab/moscot 60 42829 6 - - 1b0312
theislab/ehrapy 46 53538 679624a2783cd
theislab/ehrapy 46 53538 6 84d33c theislab/ehrapy 46 53538 6 926737 theislab/ehrapy 46 53538 6 b50f73 5 27 723d8fc + + +08d382
theislab/pertpy 5 27 72c96cd23d8fc
theislab/pertpy 5 27 7<a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” -title=“Revert”Deleted JaxscgenPlot”“>4048352c96cd
theislab/pertpy 5 27 79bad01<a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” +title=“Revert”Deleted JaxscgenPlot”“>404835
theislab/batchglm 28b974
6 7 50c8a6167e066
theislab/geome 5bf0cd
theislab/multigrate10343 -7a9432
theislab/hadge 8 2 150d49
theislab/cellrank_notebooks 6 4 bd10c2
theislab/moscot_notebooks 5 1 f520dc
theislab/ehrapy-datasets 4 2 cb7707
theislab/augurpy 2 2 1ea5dc
theislab/augurpy 2 2 8a5e8a
theislab/batch_correction_cellpainting 1 1 1d015d
theislab/bindome 1 3 3cb12b
theislab/transcription_factor_activity 1 1 ced39f
theislab/cellrank2_reproducibility 0 0 96c815
theislab/gh-dashboard 0 2 0 0dd67e6b84fd8
theislab/idtrack 0 1 12aa73
theislab/idtrack 0 1 2e23ba
theislab/idtrack 0 1 63e94a
theislab/sfaira-portal 0 4 theislab/scCODA 117 989 20
theislab/chemCPA 57 556 10
12
theislab/multigrate10353
theislab/scAnalysisTutorial 10 3 0 3
theislab/campa 9 4 4 3
theislab/diffxpy_tutorials 9 8 4 2
theislab/enrichment_analysis_celltype 9 5 0 4
theislab/moslin 9 1 0 1
theislab/ncem_tutorials 9 4 5 0
theislab/superexacttestpy 9 2 3 0
theislab/tissue_tensorflow 9 3 0 0
theislab/greatpy 8 3 3 0
theislab/ncem_benchmarks 8 4 4 2
theislab/squidpy_reproducibility 8 2 0 5
theislab/trvaep 8 3 0 2
theislab/expiMap_reproducibility 7 5 3 3
theislab/gastrulation_analysis 7 4 0 1
theislab/PathReg 7 3 0 0
theislab/scachepy 7 5 3 1
theislab/spapros-pipeline 7 2 0 0
theislab/theislab.github.io 7 2 9 0
theislab/2020_Mayr 6 6 0 6
theislab/intercode 6 3 1 1
theislab/scCODA_reproducibility 6 5 0 1
theislab/2018_Angelidis 5 5 0 5
theislab/2019_Strunz 5 5 1 9
theislab/disent 5 3 0 0
theislab/InterpretableAutoencoders 5 5 0 1
theislab/kbranches 5 7 0 0
theislab/sc-best-practices-ce 5 7 2 3
theislab/scanpy-demo-czbiohub 5 5 0 4
theislab/scatac_poisson_reproducibility 5 3 0 0
theislab/scPoli_reproduce 5 3 1 2
theislab/sfaira_tutorials 5 4 3 2
theislab/trVAE_reproducibility 5 3 2 4
theislab/cellrank_reproducibility_preprint 4 2 0 0
theislab/cpa-reproducibility 4 4 0 0
theislab/extended-single-cell-best-practices-container 4 4 2 1
theislab/feature-attribution-sc 4 2 8 1
theislab/LODE 4 2 9 0
theislab/covid-perturbation 3 3 0 0
theislab/ehrapy-tutorials 3 2 3 1
theislab/IMPA 3 2 0 1
theislab/multires-consensus-clustering 3 4 9 0
theislab/nbconvertR 3 3 1 2
theislab/pancreatic-endocrinogenesis 3 3 0 5
theislab/pertpy-tutorials 3 5 1 4
theislab/sc_analysis_template 3 3 0 0
theislab/singlecell_proteomics 3 4 4 3
theislab/2021_Aliluev_Tritschler_gut_HFD 2 4 0 1
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 4
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/gut_lineage 2 3 0 2
theislab/HPA_reproducibility 2 3 0 0
theislab/LineagePulse 2 5 0 0
theislab/moscot_not 2 2 8 0
theislab/mouse_cross-condition_pancreatic_islet_atlas 2 2 0 1
theislab/scanpy_squidpy_demo_2021 2 4 0 0
theislab/2020_iPS_Lung_Differentiation 1 5 0 2
theislab/2021_PRMT7_regulates_Monocyte_Extravasation 1 4 0 2
theislab/2022_Tritschler_pancreas_cross_species 1 3 0 0
theislab/autoencoderPS 1 3 0 2
theislab/bartSeq 1 5 1 5
theislab/countae 1 4 0 0
theislab/ehrapy-cli 1 3 0 0
theislab/ehrapy-site 1 3 0 0
theislab/ifcseq 1 3 0 1
theislab/interaction-tools 1 4 0 0
theislab/LungInjuryRegeneration 1 8 0 0
theislab/moscot_benchmarks 1 2 1 0
theislab/multicpa-reproducibility 1 3 0 0
theislab/multigrate_reproducibility 1 1 0 0
theislab/pertpy-datasets 1 4 0 1
theislab/scPoli_legacy 1 5 0 0
theislab/tissue_reproducibility 1 3 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 3 0 0
theislab/astrocytes_reprogramming_analysis 0 5 0 0
theislab/atlas-feature-selection-benchmark 0 2 4 0
theislab/collideseq_reproducibility 0 3 0 0
theislab/consensus-clustering-evaluation 0 4 0 0
theislab/dali 0 7 0 1
theislab/edgepy 0 3 0 0
theislab/GoBI_single_cell 0 3 0 0
theislab/ipsc_ipd_analysis 0 3 0 0
theislab/LungAgingAtlas 0 5 0 0
theislab/MetaMap-web 0 4 2 0
theislab/moscot-framework_reproducibility 0 2 0 0
theislab/MRGR_stress_analysis 0 3 0 0
theislab/organoid_dexamethason_stimulation 0 3 0 0
theislab/pancreas-targeted_pharmacology 0 7 0 2
theislab/perturbation-metrics 0 2 0 0
theislab/reproducability_AutoGeneS 0 3 0 0
theislab/reproducibility_AutoGeneS 0 3 0 0
theislab/scanpy.org 0 7 1 0
theislab/scanpy_neighbors 0 3 0 1
theislab/scarches_notebooks 0 3 0 0
theislab/sc_ketamine_analysis 0 4 0 0
theislab/sfaira-site 0 4 0 0
theislab/sfaira_benchmarks 0 3 0 0
theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 0
theislab/spapros_reproducibility 0 1 1 0
theislab/tissue 0 2