We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
When I run
%%R -i adata_luminals adata_luminals
in Jupyter, I have the error:
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) <ipython-input-131-e227b8ec76db> in <module> ----> 1 get_ipython().run_cell_magic('R', '-i adata_luminals', 'adata_luminals\n') ~/miniconda3/lib/python3.8/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell) 2389 with self.builtin_trap: 2390 args = (magic_arg_s, cell) -> 2391 result = fn(*args, **kwargs) 2392 return result 2393 <decorator-gen-121> in R(self, line, cell, local_ns) ~/miniconda3/lib/python3.8/site-packages/IPython/core/magic.py in <lambda>(f, *a, **k) 185 # but it's overkill for just that one bit of state. 186 def magic_deco(arg): --> 187 call = lambda f, *a, **k: f(*a, **k) 188 189 if callable(arg): ~/miniconda3/lib/python3.8/site-packages/rpy2/ipython/rmagic.py in R(self, line, cell, local_ns) 735 raise NameError("name '%s' is not defined" % input) 736 with localconverter(converter) as cv: --> 737 ro.r.assign(input, val) 738 739 if args.display: ~/miniconda3/lib/python3.8/site-packages/rpy2/robjects/functions.py in __call__(self, *args, **kwargs) 196 v = kwargs.pop(k) 197 kwargs[r_k] = v --> 198 return (super(SignatureTranslatedFunction, self) 199 .__call__(*args, **kwargs)) 200 ~/miniconda3/lib/python3.8/site-packages/rpy2/robjects/functions.py in __call__(self, *args, **kwargs) 115 116 def __call__(self, *args, **kwargs): --> 117 new_args = [conversion.py2rpy(a) for a in args] 118 new_kwargs = {} 119 for k, v in kwargs.items(): ~/miniconda3/lib/python3.8/site-packages/rpy2/robjects/functions.py in <listcomp>(.0) 115 116 def __call__(self, *args, **kwargs): --> 117 new_args = [conversion.py2rpy(a) for a in args] 118 new_kwargs = {} 119 for k, v in kwargs.items(): ~/miniconda3/lib/python3.8/functools.py in wrapper(*args, **kw) 873 '1 positional argument') 874 --> 875 return dispatch(args[0].__class__)(*args, **kw) 876 877 funcname = getattr(func, '__name__', 'singledispatch function') ~/miniconda3/lib/python3.8/site-packages/anndata2ri/py2r.py in py2rpy_anndata(obj) 61 if check_no_dupes(obj.var_names, "var_names"): 62 row_args["row.names"] = pandas2ri.py2rpy(obj.var_names) ---> 63 row_data = s4v.DataFrame(**row_args) 64 65 col_args = {k: pandas2ri.py2rpy(v) for k, v in obj.obs.items()} TypeError: __call__() keywords must be strings
Can you please tell me why this error happens? Thanks Dan
The text was updated successfully, but these errors were encountered:
adata_luminals_sce = anndata2ri.py2rpy(adata_luminals)
also produce the same error.
Sorry, something went wrong.
No branches or pull requests
When I run
in Jupyter, I have the error:
Can you please tell me why this error happens?
Thanks
Dan
The text was updated successfully, but these errors were encountered: