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Centrifuge workflow #97

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frankambrosio3 opened this issue Jun 23, 2022 · 0 comments
Open

Centrifuge workflow #97

frankambrosio3 opened this issue Jun 23, 2022 · 0 comments
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enhancement New feature or request priority:2 second lowest priority, moving off the back burner

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@frankambrosio3
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Same as the kraken workflow, just with centrifuge instead.

Bonus points for adding the non-redundant ncbi database to our public repo:
https://genome-idx.s3.amazonaws.com/centrifuge/nt_2018_3_3.tar.gz

This workflow would remove the need to run separate jobs for detection of C. auris and bacterial contamination.
@frankambrosio3 frankambrosio3 added enhancement New feature or request priority:2 second lowest priority, moving off the back burner labels Jun 23, 2022
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enhancement New feature or request priority:2 second lowest priority, moving off the back burner
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