03 Nov 12:55

tbates

v1.9.1

2de3298

November 2017/R 3.4.2 CRAN release. first public beta of umxACEv

NEW ?umxACEv Beta1: Variance component version of ACE. Hammer on it for Boulder workshop!
NEW: CIs in output tables!
NEW ?umxACEcov_fixed Beta1: Handles main effects of covariates in the means of continuous variables.
NEW umxModify can now equate parameters (set master = ), update is slave set of labels.
- As a result, umxEquate now doesn't autoRun by default. Let me know if this is a pain.
NEW: Dataset on general family functioning in twins. ?GFF
NEW: umxSuperModel function to automate multiple-group model creation.
NEW: optimiser parameter for umxACE and other twin models: Set the optimizer in your model code!
NEW: umx_is_numeric boolean check if variables in a dataframe are numeric.
NEW: umx_is_class boolean check if variables in a dataframe match a desired class.
NEW: umx_twin_check internal function for common input checks.
NEW: umx_set_plot_file_suffix(c("gv", "dot") function (to control the filename used for figures)/
FIXED: umxACE was broken with large cov inputs h/t @nathangillespie.
FIXED: umxAggregate now actually supports user functions as input...
BEGINNING: to add umxACEv variance components method
IMPROVED: umxPath(Cholesky = ) method: supports labels, bounds, lbound at 0.
IMPROVED: umxPath(Cholesky = ) method: return one statement instead of a list for clarity.
IMPROVED: umxACE and umxReduce.ACE run intervals
IMPROVED: umxReduce works better with umxACE models.
IMPROVED: umxEFA Supports minManifests.
IMPROVED: umxEFA Works better when returning a single factor score.
IMPROVED: umxParameters now supports digits.
IMPROVED: umxSummary "inline" reporting now includes AIC.
IMPROVED: umx_aggregate works with factor input/
- umx_aggregate(sex_T1 ~ zyg_2grp, data = x)
IMPROVED: umx_long2wide can passalong variables.
IMPROVED: umx_wide2long much more powerful
IMPROVED: umx_msg supports dataframes
IMPROVED: umxACE gains ability to set plot format: format = "graphviz" or "DiagrammeR"
IMPROVED: umx_set_auto_plot take TRUE/FALSE as input.
IMPROVED: umx_names: added a replace option to munge the names
IMPROVED: umxRAM in "sketch mode" now plots models automatically.
IMPROVED: install.OpenMx from UVa, travis, or open travis build page.
IMPROVED: umx_cor automatically drops non-numeric columns.
IMPROVED: umxCI now supports setting interval and one- or two-sided type (h/t @conor Dolan).
INTERNAL: Switch from R2HTML to xtable
MINOR: umxParameters now supports non-run models

Assets 2

18 Aug 18:12

tbates

1.8.1

f8ce529

Waiting for CRAN to fix their El Capitan build process.... since june

1.8.1

fix broken umxACE: Was failing with cov matrix input... h/t @NGillesp…

Assets 2

01 Aug 20:40

tbates

1.8.0

4a3c248

umx 1.8.0 (August 2017)

umx 1.8.0 (July 2017, R 3.4.1 (Single Candle)

TIP: umxAPA can format lots of things for you: from effects in lm -try it out!
NEW: optimiser parameter for umxACE and other twin models: Set the optimizer in your model code!
NEW umx_long2wide: Merges long data on famID, for an unlimited number of individuals in a family (twinIDs)
NEW umx_wide2long: Takes a family (currently limited to 2) df, and returns a long-format version.
NEW forEach option in umxPath (like one.headed version of "unique.pairs").
IMPROVED: Auto run/plot for umxGxE
IMPROVED: switched umxGxE plot colors to the universal ACE -> RGB scheme
IMPROVED: umxCI supports setting interval and type
IMPROVED: twin models now print summary when autoRun
IMPROVED: models now plot by default
umxACEcov improved, but still not working well for multivariate
- older versions worked with 1 DV only, couldn't handle multivariate means, had poor start values.
IMPROVED: lound diag to 0 by default in umxACE
IMPROVED: Better default model name for umxACEcov;
IMPROVED: More helpful default core list for umx_check_parallel (1 and n-1); plus improved formating of times
IMPROVED: umxReduce does a much better job reporting automated umxGxE model reduction.
IMPROVED: umxAPA handles lme models
IMPROVED: umxPrint error messages
DOCUMENT logic.MxModel Rd page for logic.MxModel.
CHANGE: Rg is now off by default for umx twin model summaries
CHANGE: OpenMx now supports confint, so this has been dropped from umx (added alias to umxConfint)
CHANGE: OpenMx now supports anova, so this has been dropped from umx
FIXED: Removed superfluous print call from umx_MakeTwinData

Assets 2

21 Mar 14:08

tbates

1.5.5

9537f40

R 3.3.3 companion - Another Canoe with better OpenMx 2.7x compatibility and some features

umx 1.5.5

This March 2017 release (in line with R 3.3.3 "Another Canoe") contains a couple of new mini-features:
NEW: umx_write_to_clipboard
NEW: umx_r_test
NEW: autoRun option in umxModify (ht @bwiernik)

And also some and a rollback of a generic CSOLNP tolerance change introduced in 1.5.1: this just caused hassles - sorry. Instead, we just special-case the optimiser.

As ever: let me know what new features you'd like!

Assets 2