setup.py

"""A setuptools based setup module"""

# Always prefer setuptools over distutils
from setuptools import setup, find_packages

# To use a consistent encoding
from codecs import open
from os import path, system

here = path.abspath(path.dirname(__file__))

# Get the long description from the README file
with open(path.join(here, "README.md"), encoding="utf-8") as f:
    long_description = f.read()


# Get the version from the init file
version = None
with open(path.join("netpyne", "__init__.py"), "r") as fid:
    for line in (line.strip() for line in fid):
        if line.startswith("__version__"):
            version = line.split("=")[1].strip().strip("'")
            break
if version is None:
    raise RuntimeError("Could not determine version")

import sys

if "upload_via_twine" in sys.argv:
    system("twine upload dist/netpyne-" + version + "-py2.py3-none-any.whl")
elif "upload_via_twine_testpypi" in sys.argv:
    system("twine upload --repository pypitest dist/netpyne_py3-" + version + "-py2.py3-none-any.whl")
else:
    setup(
        name="netpyne",
        version=version,  # update this in netpyne/__init__.py; makes it accessible to python scripts too...
        description="A Python package to develop, simulate and analyse biological neuronal networks in NEURON.",
        long_description=long_description,
        long_description_content_type="text/markdown",
        # python_requires='>=2.7, >=3.6', # removed since makes py2 install fail with universal wheel
        # The project's main homepage.
        url="https://github.com/Neurosim-lab/netpyne",
        # Author details
        author="Salvador Dura-Bernal (Neurosim lab)",
        author_email="salvadordura@gmail.com",
        # Choose license
        license="MIT",
        # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
        classifiers=[
            # How mature is this project? Common values are
            #   3 - Alpha
            #   4 - Beta
            #   5 - Production/Stable
            "Development Status :: 4 - Beta",
            # Indicate who your project is intended for
            "Intended Audience :: Science/Research",
            "Topic :: Scientific/Engineering :: Visualization",
            # Pick your license as you wish (should match "license" above)
            "License :: OSI Approved :: MIT License",
            # Specify the Python versions you support here. In particular, ensure
            # that you indicate whether you support Python 2, Python 3 or both.
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.7",
            "Programming Language :: Python :: 3.8",
            "Programming Language :: Python :: 3.9",
            "Programming Language :: Python :: 3.10",
            "Programming Language :: Python :: 3.11",
        ],
        # What does project relate to?
        keywords=["neuron", "network", "developing", "framework", "biological", "simulation"],
        # You can just specify the packages manually here if your project is
        # simple. Or you can use find_packages().
        packages=find_packages(exclude=["saveLoadV1"]),
        # List run-time dependencies here.  These will be installed by pip when
        # your project is installed. For an analysis of "install_requires" vs pip's
        # requirements files see:
        # https://packaging.python.org/en/latest/requirements.html
        install_requires=["numpy", "scipy", "matplotlib", "matplotlib-scalebar", "future", "pandas", "bokeh", "schema", "lfpykit", "tqdm"],
        # List additional groups of dependencies here (e.g. development
        # dependencies). You can install these using the following syntax,
        # for example:
        # $ pip install -e .[dev,test]
        extras_require={},
        # If there are data files included in your packages that need to be
        # installed, specify them here.  If using Python 2.6 or less, then these
        # have to be included in MANIFEST.in as well.
        package_data={},
        # Although 'package_data' is the preferred approach, in some case you may
        # need to place data files outside of your packages. See:
        # http://docs.python.org/3.4/distutils/setupscript.html#installing-additional-files # noqa
        # In this case, 'data_file' will be installed into '<sys.prefix>/my_data'
        data_files=[],
        # To provide executable scripts, use entry points in preference to the
        # "scripts" keyword. Entry points provide cross-platform support and allow
        # pip to create the appropriate form of executable for the target platform.
        entry_points={},
    )