Snakefile_sbm

# snakefile for simulate-sbm
# written by: viola.fanfani

#configfile: "workflows/config_sbm.yaml"

# Simulations Parameters
sim_path= config["simulations"]["sim_path"]

OUTPATH=config["simulations"]["outpath"]
NOP=config["simulations"]["nop"]

simtype = config["simulations"]["sim_type"]


# gnt parameters

gnt_analysis = config["gnt_parameters"]["analysis"]
n_nodes= config["gnt_parameters"]["n_nodes"]
NPm=config["gnt_parameters"]["network_probability"]
NCm = config["gnt_parameters"]["fc"]
NNm = config["gnt_parameters"]["nnodes"]
Sm=range(config["gnt_parameters"]["number_of_simulations"])

# Crosstalk parameters

gna_analysis = config["gna_parameters"]["analysis"]
n_nodesm= config["gna_parameters"]["n_nodes"]
NPct=config["gna_parameters"]["network_probability"]
cis = config["gna_parameters"]["fc_cis"]
trans = config["gna_parameters"]["fc_trans"]
NNct = config["gna_parameters"]["nnodes"]
Sct=range(config["gna_parameters"]["number_of_simulations"])


include: "rules/sbm_gnt.smk"
include: "rules/sbm_gna.smk"


rule all:
    input:
        expand(OUTPATH + "final_{st}.csv", st = simtype)