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Pending tasks #52

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ypriverol opened this issue Feb 13, 2020 · 1 comment

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ypriverol commented Feb 13, 2020 •

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Hi all, a quick update from February 13:

I have run the identification pipeline for both datasets here the results:
ftp://ftp.pride.ebi.ac.uk/pride/data/proteogenomics/projects/eubic-2020/datasets/
The clustering results has been added to the clustering folder in both folders.
Can anyone run the identification metrics and the identification metrics on this data?
@lev Levitsky Can you guys update the notebook to accept multiple id files.

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jgriss commented Apr 7, 2021

@ypriverol I'd suggest to also add msCRUSH to the analysis. They are the only ones who claim in their paper that they can increase id rates.

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