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platform_independent_environment.yml
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name: ContraNovo
channels:
- conda-forge
- defaults
dependencies:
- python=3.9
- libffi
- openssl
- pip
- readline
- sqlite
- tk
- xz
- zlib
- pip:
- absl-py
- aiohttp
- aiosignal
- appdirs
- arrow
- async-timeout
- attrs
- boto3
- botocore
- bravado
- bravado-core
- cachetools
- certifi
- cffi
- charset-normalizer
- click
- contourpy
- cryptography
- cycler
- deprecated
- einops
- fastobo
- filelock
- fonttools
- fqdn
- frozenlist
- fsspec
- future
- gitdb
- gitpython
- google-auth
- google-auth-oauthlib
- grpcio
- h5py
- idna
- importlib-metadata
- importlib-resources
- isoduration
- jinja2
- jmespath
- joblib
- jsonpointer
- jsonref
- jsonschema
- jsonschema-specifications
- kiwisolver
- lark
- lightning-utilities
- llvmlite
- lmdb
- lxml
- markdown
- markupsafe
- matplotlib
- monotonic
- mpmath
- msgpack
- multidict
- natsort
- neptune
- networkx
- numba
- numpy
- oauthlib
- packaging
- pandas
- pillow
- protobuf
- psutil
- pyasn1
- pyasn1-modules
- pycparser
- pygithub
- pyjwt
- pynacl
- pyparsing
- pyteomics
- python-dateutil
- pytorch-lightning==1.9.5
- pytz
- pyyaml
- requests
- requests-oauthlib
- rsa
- s3transfer
- scikit-learn
- scipy
- simplejson
- six
- smmap
- spectrum-utils
- swagger-spec-validator
- sympy
- tensorboard
- tensorboard-data-server
- threadpoolctl
- tqdm
- typing-extensions
- tzdata
- uri-template
- urllib3
- webcolors
- websocket-client
- werkzeug
- wrapt
- yarl
- zipp