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Out of memory #37

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catfish132 opened this issue Sep 27, 2022 · 2 comments
Open

Out of memory #37

catfish132 opened this issue Sep 27, 2022 · 2 comments

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@catfish132
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my csv is so big that the memory is out of the range. May be there is a way to fix out
@jirvin16
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my csv is so big that the memory is out of the range. May be there is a way to fix out

Maybe try reading the CSV in chunks, running the labeler on each chunk, then writing the output iteratively.

@BardiaKh
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I faced the same issue as I was processing 1.5M reports. I created a set of scripts to chunk a large file and process chunks in parallel automatically. This might be useful for others who see this so they don't have to reinvent the wheel:

https://github.com/BardiaKh/ParallelCheXpertLabeler

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@jirvin16 @BardiaKh @catfish132