From 723f70ea32fb51ea2818d89cb65df9cae7ea72b0 Mon Sep 17 00:00:00 2001
From: Adam Coates <123807847+adamcoatess@users.noreply.github.com>
Date: Mon, 3 Jul 2023 10:19:32 +0200
Subject: [PATCH] Changes to the output path

Allow the functions to output the full path to the output
---
 func/presurf_INV2.m      | 3 ++-
 func/presurf_MPRAGEise.m | 2 +-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/func/presurf_INV2.m b/func/presurf_INV2.m
index 61cc4ed..06678db 100755
--- a/func/presurf_INV2.m
+++ b/func/presurf_INV2.m
@@ -1,4 +1,4 @@
-function presurf_INV2(full_path_to_file)
+function [full_path_to_out, biascorr]=presurf_INV2(full_path_to_file)
 disp(' ');
 disp('+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++');
 disp([datestr(datetime('now')), '        Start Pre-processing INV2']);
@@ -113,6 +113,7 @@ function presurf_INV2(full_path_to_file)
 
 % Bias corrected file
 copyfile(fullfile(full_path_to_out,['m',in_file_name]), fullfile(full_path_to_out,[in_file_prefix,'_biascorrected.nii']));
+biascorr=fullfile(full_path_to_out,[in_file_prefix,'_biascorrected.nii']);
 delete(fullfile(full_path_to_out,['m',in_file_name]));
 
 % Bias field file
diff --git a/func/presurf_MPRAGEise.m b/func/presurf_MPRAGEise.m
index 1edc181..a472c88 100644
--- a/func/presurf_MPRAGEise.m
+++ b/func/presurf_MPRAGEise.m
@@ -1,4 +1,4 @@
-function full_path_to_output = presurf_MPRAGEise(full_path_to_inv2,full_path_to_uni)
+function [full_path_to_output] = presurf_MPRAGEise(full_path_to_inv2,full_path_to_uni)
 disp(' ');
 disp('+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++');
 disp([datestr(datetime('now')), '        Start MPRAGEising']);