config.yaml

## This is the unique configuration file for the software Knowledge Base framework

version: "0.2"

## configuration related to ArangoDB
arangodb:
  arango_host: "localhost"
  arango_port: 8529
  arango_protocol: "http"
  arango_user: "root"
  arango_pwd: "root"

## indexing and search via ElasticSearch
elasticsearch:
  cluster: ""
  host: ""
  port: 9200
  index_name: "software-kb"
  batch_size: 1000
  thread_count: 6
  keep_alive: false
  log: "error"
  request_timeout: 1000000
  sniff_on_start: true
  suggest_compression: true

## for using GROBID as additional data normalization service (for raw bibliographical references, name, dates)
grobid:
  grobid_host: "cloud.science-miner.com/grobid"
  grobid_protocol: "https"
  grobid_port: ~

## for using biblio-glutton for reference matching
biblio-glutton:
  biblio_glutton_host: "cloud.science-miner.com/glutton"
  biblio_glutton_protocol: "https"
  biblio_glutton_port: ~

## for using entity-fishing for additional disambiguation and text summaries
entity-fishing:
  entity_fishing_host: "cloud.science-miner.com/nerd"
  entity_fishing_protocol: "https"
  entity_fishing_port: 

crossref:
  crossref_base: "https://api.crossref.org"
  crossref_email: ~
    
unpaywall:
  unpaywall_base: "http://api.unpaywall.org/v2/"
  unpaywall_email: ~

# logging, see https://docs.python.org/3/library/logging.config.html#logging-config-fileformat
logging:
  formatters:
    simple:
      format: '%(asctime)s - %(name)s - %(levelname)s - %(message)s'
  handlers:
    console:
      class: logging.StreamHandler
      level: DEBUG
      formatter: simple
      stream: ext://sys.stdout
  loggers:
    simpleExample:
      level: DEBUG
      handlers: [console]
      propagate: no
  root:
    level: DEBUG
    handlers: [console]

## CORS setting for the web API
CORS:
  allowed_origins:
    - "*"
  allowed_methods:
    - "OPTIONS"
    - "GET"
    - "PUT"
    - "POST"
    - "DELETE"
    - "HEAD"
  allowed_headers:
    - "X-Requested-With"
    - "Content-Type"
    - "Accept"
    - "Origin"

## web API settings
api:
  port: 8080 
  host: "localhost"
  # to specify a custom default header in the response
  #header: 
  reload: false 
  log_level: "debug"
  # the following is used in the generated API documentation
  version: "0.2"
  name: "Software KB web API"
  description: "Web API for the Software Knowledge Base"
  api_route: ""