DESCRIPTION

Encoding: UTF-8
Package: scDemultiplex
Type: Package
Title: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos
Version: 0.1.2
Date: 2024-11-11
Authors@R: c(person("Li-ching", "Huang", email = "li-ching.huang.1@vumc.org", role = c("aut")),
             person("Lindsey", "Stolze", email = "lk.stolze@vumc.org", role = c("aut")),
             person("Alexander", "Gelbard", email = "alexander.gelbard@vumc.org", role = c("aut")),
             person("Hua-Chang", "Chen", email = "hua-chang.chen@vumc.org", role = c("aut")),
             person("Yu", "Shyr", email = "yu.shyr@vumc.org", role = c("aut")),
             person("Qi", "Liu", email = "qi.liu@vumc.org", role = c("aut")),
    		     person("Quanhu", "Sheng", email = "quanhu.sheng.1@vumc.org", role = c("aut", "cre"))
            )
Description: 
  scDemultiplex: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos
License: LGPL
URL: https://github.com/shengqh/scDemultiplex
Depends: R (>= 3.5), R.utils, ggplot2, Seurat, dirmult, MGLM, zoo, gridExtra, edgeR, TailRank, reshape2, tictoc, ggExtra, bbmle, choisycutoff, doParallel
biocViews:
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Suggests: 
    rmarkdown