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User documentation on different methods of benchmarking with SpatialData #763

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berombau opened this issue Nov 6, 2024 · 0 comments
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@berombau
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berombau commented Nov 6, 2024

Is your feature request related to a problem? Please describe.
A lot of documentation is focused on one dataset or method. Method developers need to benchmark multiple datasets or methods e.g.

Benchmarking functions

  • compare two segmentation models creating a Labels element
  • compare two methods outputting a SpatialData object

Benchmarking pipelines

  • working towards larger benchmarks
  • how to benchmark on large infrastructure, HPC
  • link to openproblems.bio

Describe the solution you'd like
A tutorial documentation with just text on benchmarking pointing to the right resources or documentation for each type of benchmarking method.

Describe alternatives you've considered
A lot of existing material exists, but there is no overview or examples specifically using SpatialData.

Additional context
Benchmarking or performance analysis for developers contributing to SpatialData is out-of-scope for this issue.

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