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I am getting the following error
Error: vector::_M_range_check: __n (which is 2538) >= this->size() (which is 2538) Execution halted
when we reach the chunck number 41, without conditioning the code works fine.
My code
/usr/bin/time -v Rscript ${saigepath}step2_SPAtests.R \ --vcfFile=${vcfpath}CHR6_PID112437_colon.vcf.gz \ --vcfFileIndex=${vcfpath}CHR6_PID112437_colon.vcf.gz.csi \ --vcfField=DS \ --LOCO=FALSE \ --chrom=6 \ --minMAF=0 \ --minMAC=3 \ --is_fastTest=TRUE \ --GMMATmodelFile=${outpath}out_s1_0.125_2000.rda \ --varianceRatioFile=${outpath}out_s1_0.125_2000.varianceRatio.txt \ --SAIGEOutputFile=${outpath}out_6:32651477:A:T.txt \ --is_output_moreDetails=TRUE \ --sparseGRMFile=${outpath}sparseGRM_relatednessCutoff_0.125_2000_randomMarkersUsed.sparseGRM.mtx \ --sparseGRMSampleIDFile=${outpath}sparseGRM_relatednessCutoff_0.125_2000_randomMarkersUsed.sparseGRM.mtx.sampleIDs.txt \ --relatednessCutoff=0.125 \ --condition=6:32651477:A:T
Could you provide any feedback on this issue.
The text was updated successfully, but these errors were encountered:
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I am getting the following error
when we reach the chunck number 41, without conditioning the code works fine.
My code
Could you provide any feedback on this issue.
The text was updated successfully, but these errors were encountered: