diff --git a/Dockerfile b/Dockerfile index b4a1dbc..d0f3055 100644 --- a/Dockerfile +++ b/Dockerfile @@ -14,7 +14,7 @@ COPY --chown=rstudio:rstudio . /home/rstudio/ RUN Rscript -e "BiocManager::install(c('RCurl', 'xcms', 'MsExperiment', 'SummarizedExperiment', \ 'Spectra', 'MetaboCoreUtils', 'limma', 'matrixStats', 'pander', 'RColorBrewer', \ 'pheatmap', 'vioplot', 'ggfortify', 'gridExtra', 'AnnotationHub', 'CompoundDb', \ - 'MetaboAnnotation', 'RforMassSpectrometry/MsIO', 'RforMassSpectrometry/MsBackendMetaboLights'), \ + 'MetaboAnnotation', 'RforMassSpectrometry/MsIO', 'RforMassSpectrometry/MsBackendMetaboLights', 'quarto'), \ ask = FALSE, dependencies = TRUE)" && \ Rscript -e "BiocManager::install('sneumann/xcms', ref = 'phili', ask = FALSE)"