New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

benchmark the bwa alignment step. #1

Open

shawnzhangyx opened this issue May 24, 2017 · 0 comments

Labels

Member

shawnzhangyx commented May 24, 2017

Check the performance/speed of

alignment
filter_chimeric
mkPE
sorting.
See which is the rate limiting step.
Is there need to separate the pipe into temp files to avoid "broken Pipe"?

shawnzhangyx added the enhancement label

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment