DESCRIPTION

Package: prora
Type: Package
Title: ORA, sigORA and GSEA functionalities for proteomic data
Version: 0.1.0
Authors@R: c(person("Lucas", "Kook",
    email = "lucasheinrich.kook@uzh.ch",
    role = c("aut"),
    comment = c(ORCID = "0000-0002-7546-7356")),
    person("Witold E.", "Wolski",
    email = "wew@fgcz.ethz.ch",
    role = c("cre"),
    comment = c(ORCID = "0000-0002-6468-120X")))
Description: Implements gene pair signature based over representation
    analysis and gene set enrichment tools. Allows background specification
    for sigORA using the sigora package  without further ID mapping being necessary.
Depends: R (>= 3.5), WebGestaltR (>= 0.4)
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: 
  AnnotationDbi,
  AnnotationHub,
  clusterProfiler,
  dplyr,
  DT,
  GO.db,
  dynamicTreeCut,
  fgsea,
  httr,
  magrittr,
  matrixStats,
  msigdbr,
  org.Hs.eg.db,
  reactome.db,
  readr,
  rlang,
  S4Vectors,
  sigora,
  tibble,
  tidyr,
  UpSetR
Remotes:
  bioc::3.13/clusterProfiler
Suggests:
  docopt,
  bookdown,
  DPAclustR,
  knitr,
  rmarkdown,
  slam,
  tidyverse,
  writexl
RoxygenNote: 7.1.2
VignetteBuilder: knitr
biocViews: MassSpectrometryData, ReproducibleResearch