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The pragma_boot

Contents

The pragma_boot script was rewritten in python to accommodate more drivers and reposittories. The main script is now called pragma and it is used to instantiate Virtual Machine in PRAGMA testbed sites.

The agruments to pragma depend on the specific command being executed. The following represents a list of current sub-commands:

  • boot {vc-name} {num-cpus} [enable-ent=boolean] [enable-ipop-client=string] [enable-ipop-server=string] [key=string] [logfile=string] [loglevel=string]
  • clean {vc-name}
  • help {command}
  • list cluster {vc-name}
  • list help [subdir=string]
  • list repository
  • shutdown {vc-name}

Installation

We recommend install in /opt/pragma_boot

  1. Install libguestfs-tools-c package on frontend node only

    yum --enablerepo=base install libguestfs-tools-c

  2. Check out github repository

    cd /opt
git clone  https://github.com/pragmagrid/pragma_boot

  3. Create configuration files for your site in /opt/pragma_boot/etc based on site information. The directory contains templates for site configuration file and driver configuration files. For example

    cd /opt/pragma_boot/etc
cp site_conf.conf.template site_conf.conf  (and edit according to your site info)
cp kvm_rocks.conf.template kvm_rocks.conf  (and edit according to your driver info)

    Example site_conf.conf file for a site using kvm_rocks driver and a local repository:

    # Choose is the viritualization engine driver type
site_ve_driver = "kvm_rocks"

# Temporary directory for staging virtual images before deployment.
temp_directory = "/state/partition1/temp"

# Default directory for log files
log_directory = "/var/log/pragma_boot"

# Set individual variables in repositroy_settings based on your site configuration.
repository_settings = {
   # Required repository class to use
   'repository_class' : "local",

   # Required local repository directory to use for caching virtual images
   'repository_dir' : "/state/partition1/vm-images",

   # Optional virtual images database file. Defaults to 'repository_dir'/vcdb.txt
   'vcdb_filename' : "vcdb.txt",
}

    Note: If you are using kvm_rocks and want to host all/some if the latest PRAGMA virtual cluster images, the easiest setup will be to configure site_conf.conf to use the "clonezilla" repository type. Please see the clonezilla section below for more information.

    Example kvm_rocks.conf file

    The network information in this file is what your physical site can use for the virtual clusters. The IP addresses must have their associated FQDNs and the gateway and DNS info must be current. You need one IP and one vlan per virtual cluster. The example below supports hosting of 2 virtual clusters

    # public IP addresses pragma_boot can use
public_ips=["111.110.109.2", "111.110.109.3"]

# metmask for public IP addresses
netmask="255.255.255.0"

# gateway
gw="111.110.109.1"

# DNS server
dns="8.8.8.8"

# available vlans that can be used for private network
vlans= range(22,23)

# specify alternate directory for images if using NFS; required (leave empty for default)
diskdir = ""

# do not allocate all cpus, leave this many empty
num_processors_reserved = 2

  4. Create a local repository directory, the directory path must correspond to the repository_dir in site_conf.conf file. For example

    mkdir /state/partition1/vm-images

    In this directory create images database file. The default is vcdb.txt and it is identified in site_conf.conf file by vcdb_name variable. Example vcdb.txt file

    rocks-sge-ipop,rocks-sge-ipop/rocks-sge-ipop.xml
wa-dock,wa-dock/wa-dock.xml
hku_biolinux,hku_biolinux/hku_biolinux.xml

    This example file describes a local repository with 3 virtual clusters. For each cluster there is a corresponding directory where actual image files and a description xml file are located. For example

    # ls /state/partition1/vm-images/rocks-sge-ipop/
nbcr-226-sge-ipop-compute.vda  nbcr-226-sge-ipop-frontend.vda  rocks-sge-ipop.xml

    Create directories for the images you want to host and download images and their xml files. Email [email protected] for the download link.

  5. Test your configuration.

    Add pragma boot directory to your path

    # export PATH=$PATH:/opt/pragma_boot/bin

    List repositories

    # pragma list repository
VIRTUAL IMAGE
hku_biolinux
rocks-sge-ipop
wa-dock

    The last 4 lines show the expected output for the vcdb.txt example file which lists 3 virtual clusters in the repository

    Boot a cluster with a frontend and no compute nodes using hku_biolinux image

    # pragma boot hku_biolinux 0 loglevel=DEBUG

    The log file will be in /var/log/pragma_boot/

PRAGMA Virtual Cluster Requirements

A virtual cluster has a virtual frontend and virtual compute nodes. To create a virtual cluster which is compatible with PRAGMA infrastructure the nodes must respect the following criteria:

  • Physical frontend must have fuse and libguestfs-tools-c installed (for a site with kvm_rocks driver)
  • All host runs inside kvm-based virtualization engine (for a site with kvm_rocks driver)
  • Each VM has a single disk image
  • VM disk images can be compressed using Lempel-Ziv coding (with extension .gz)
  • VM disk images must be in raw format (no other formats are supported now)
  • The first partition on the disk image is the / partition
  • No LVM/RAID or other fancy FS type is supported
  • Virtual frontend has 2 network interfaces. The first one connects to private network, the second connects to public network
  • Virtual compute node has 1 network interface connected to a private network
  • When the frontend boots, it expects a file in /root/vc-out.xml to configure its network interfaces and the list of compute hosts
  • When the compute node boots, it expects a file in /root/vc-out.xml to configure its network

Supported Drivers

There are 2 supported drivers represeting site virtualization engine:

  1. cloudstack - for CloudStack-enabled site
  2. kvm_rocks - for Rocks-enabled site.

The following settings must be present in <install_path>/etc/site_conf.conf file:

  • site_ve_driver - specifies the driver name (one form above list)
  • temporary_directory - the path for the temporary directory used for staging all VM images

For each driver there is a driver configuration file (pytohn syntax) in <install_path>/etc/. The driver configuration file consists of information that a site virtualization engine will use for the instantiated virtual images.

1. kvm_rocks configuration file

  • public_ips - a list of public IP addresses that can be used for virtual clusters.

  • netmask - metmask for public IP addresses

  • gw - gateway

  • dns - DNS server

  • vlans - available vlans that can be used for private network, specified as a range, for example range(22,25)

  • diskdir - alternate directory for images if using NFS; required (leave empty for default)

  • available_containers - specify vm-containers to use for hostiung virtual images (space separated string)

  • num_processors_reserved - do not allocate all cpus, leave this many empty

  • ent - for ENT-enabled sites, specify openvFlow network info

    ent = {
   'subnet_name': 'openflow',
   'interface_name': 'ovs'
}

2. cloudstack configuration file

  • baseurl - URL to Cloudstack REST API
  • apikey and secretkey - Credentials to use Cloudstack REST API Go to Accounts -> <your account name> -> View users -> <your username> If "API Key" and "Secret Key" are empty, click the Generate Keys icon (second icon)
  • templatefilter - category of templates where VM instances are configured, for example "community"
  • networkoffering - Network offering. This is neded for creating of new networks for the virtual clusters. Theere may be multiple offerings in CloudStack. Default is "DefaultIsolatedNetworkOfferingWithSourceNatService"

Supported Repositories

pragma currently supports 4 repository classes that are configured in the <install-dir>/etc/site_conf.conf file. This file has a python syntax and specifies settings for the physical site configuration. For a description of the virtual cluster images, please see images-repository.rst.

For a description of imags modifications see images-edits.rst

local

Virtual images are stored on the local disk. The following parameters are required:

  • repository_class - should be set to "local".

  • repository_dir - a path to a directory containing a virtual cluster database file (vcdb.txt) and subdirectories for virtual cluster images. Each subdirectory contains 1 or 2 images (only frontend, or frontend and compute) and a xml file (lbivirt style) that describes images.

  • vcdb_filename - the name of the virtual cluster database file. It is assumed to be relative to the repository_dir param above. The format of the vcdb.txt file is:

    virtualClusterX,/path/to/XmlDescription/virtualClusterX.xml
virtualClusterY,/path/to/XmlDescription/virtualClusterY.xml

    For example, contents of the file describing images for 3 virtual clusters :

    airbox,/state/kvmdisks/repository/airbox/airbox.xml
centos7,/state/kvmdisks/repository/centos7/centos7.xml
rocks-basic,/state/kvmdisks/repository/rocks-basic/rocks-basic.xml

    If raw or qcow2 file images are stored in the repository, their locations are assumed to be in the same relative directory as the libvirt xml description of the virtual cluster. Therefore we recommend the following sub-directory structure for the repository_dir which corresponds to the example vcdb.txt listed above:

    vcdb.txt
airbox/
  airbox.xml
  airbox.raw
centos7/
  centos7.xml
  centos7-compute.img
  centos7-frontend.img
rocks-basic/
  rocks-basic.xml
  rocks-basic-compute.raw
  rocks-basic-frontend.raw

http

Virtual images are hosted on any http/https server including Amazon S3. No authentication is supported. The following parameters are required:

  • repository_class - should be set to http.
  • repository_dir - a path to a directory where the vdcb and images can be cached
  • vcdb_filename - the name of the virtual cluster database file. See description in local.
  • repository_url - base url of the http repository. For Amazon S3, the url is https://s3.amazonaws.com/bucket_name. Note that for Amazon S3, the file must be publicly accessible. Do not omit http:// or https://

clonezilla

The Clonezilla repository type is a remote repository similar to http except that the virtual cluster images are stored in a generic Clonezilla image format and can then be converted to any image type appropriate to your local installation (e.g., zvol, raw, qcow2) using the Clonezilla tool. The default remote clonezilla repository can be found in Google Drive.

To use the Clonezilla repository, the following dependencies must be installed:

The following parameters are required in site_conf.conf:

  • repository_class - should be set to "clonezilla".
  • repository_dir - a path to a directory where the vdcb and images can be cached
  • vcdb_filename - the name of the virtual cluster database file. See description in local.
  • repository_url - base url of the Clonezilla repository in Google drive. Please use the default value specified in the site_conf.conf file.
  • cziso - full path to the cziso tool installed on this system.
  • local_image_url - a cziso URL template indicating the desired image format for your local installation (e.g., zvol, raw, qcow2). The value $repository_dir will be replaced by the value specified above and $imagename will be replaced by the virtual cluster image name found in the Clonezilla repository. Examples of valid local_image_urls are found below:
    • for ZFS volume on rocks cluster: zfs://nas-0-0/pragma/$imagename-vol
    • for RAW images: file://$repository_dir/$imagename.raw or file://$repository_dir/$imagename.img
    • for QCOW2 images: file://$repository_dir/$imagename.qcow2

The following parameters are optional for the Clonezilla repository:

  • include_images - only sync images from remote repository that match a specified pattern.
  • exclude_images - sync all images from remote repository except those matching the specified pattern.

This repository type is intended to be synced regularly (e.g., daily or weekly) with the remote repository. Create an executable cron script and run it at a freqeuncy you want to run sync. For example, on CentOS or Ubuntu it can be /etc/cron.daily/pragma-sync.cron or /etc/cron.weekly/pragma-sync.cron. The content of the executable cron script:

#!/bin/bash
/opt/pragma_boot/bin/pragma sync repository

cloudfront

Virtual images are hosted on Amazon CloudFront with automatic signed url creation.

To use the cloudfront repository, the following dependencies will need to be installed:

  • boto (version 2.25.0 or later)
  • rsa (version 3.1.4 or later)

The following parameters are required in site_conf.conf:

  • repository_class - should be set to "cloudfront".
  • repository_dir - a path to a directory where the vdcb and images can be cached
  • vcdb_filename - the name of the virtual cluster database file. See description in local.
  • repository_url - CloudFront domain name of the distribution to use. Can be found on AWS CloudFront Console. NOTE: Do not omit http:// or https://
  • keypair_id - CloudFront Key Pair. Generated from AWS Security Console.
  • private_key_file : Full path to private key file corresponding to keypair_id. Generated from AWS Security Console.

To generate a CloudFront Key Pair:

  1. Log into AWS Console
  2. Click on account name and select Security Credentials
  3. Expand CloudFront Key Pairs section and click Create New Key Pair
  4. Download public key, private key and take note of access key id (keypair_id)