diff --git a/Makefile b/Makefile index 0d9e5e6..23b2b79 100644 --- a/Makefile +++ b/Makefile @@ -2,7 +2,7 @@ # Parameters ENV_NAME := tda-nn-separability -PYTHON_VERSION := 3.11 +PYTHON_VERSION := 3.10 ENV_FILE := environment.yaml # Default goal diff --git a/environment.yaml b/environment.yaml index caf7110..a93a238 100644 --- a/environment.yaml +++ b/environment.yaml @@ -9,26 +9,29 @@ dependencies: - _openmp_mutex=4.5 - aiohttp=3.9.3 - aiohttp-retry=2.8.3 - - aiosignal=1.3.1 + - aiosignal=1.2.0 - amqp=5.2.0 + - annotated-types=0.6.0 - antlr-python-runtime=4.9.3 - appdirs=1.4.4 - - asttokens=2.4.1 + - async-timeout=4.0.3 - asyncssh=2.14.1 + - atk-1.0=2.36.0 - atpublic=3.0.1 - - attrs=23.2.0 + - attrs=23.1.0 + - backports=1.0 + - backports.functools_lru_cache=2.0.0 - backports.zoneinfo=0.2.1 - billiard=4.2.0 - blas=1.0 - - boto3=1.34.74 - - botocore=1.34.74 - - bottleneck=1.3.7 - - brotli=1.1.0 - - brotli-bin=1.1.0 + - boto3=1.29.1 + - botocore=1.32.1 - brotli-python=1.0.9 - bzip2=1.0.8 + - c-ares=1.28.1 - ca-certificates=2024.2.2 - - cachetools=5.3.3 + - cachetools=4.2.2 + - cairo=1.16.0 - celery=5.3.6 - certifi=2024.2.2 - cffi=1.16.0 @@ -36,263 +39,247 @@ dependencies: - click=8.1.7 - click-didyoumean=0.3.1 - click-plugins=1.1.1 - - click-repl=0.3.0 + - click-repl=0.2.0 - colorama=0.4.6 - - comm=0.2.2 - - configobj=5.0.8 - - contourpy=1.2.0 + - configobj=5.0.6 - cryptography=42.0.5 - cuda-cudart=12.1.105 - cuda-cupti=12.1.105 - cuda-libraries=12.1.0 - cuda-nvrtc=12.1.105 - cuda-nvtx=12.1.105 - - cuda-opencl=12.4.99 + - cuda-opencl=12.4.127 - cuda-runtime=12.1.0 - - cycler=0.12.1 - - dbus=1.13.18 - - debugpy=1.8.1 + - curl=8.7.1 - decorator=5.1.1 - dictdiffer=0.9.0 - diskcache=5.6.3 - - distro=1.9.0 + - distro=1.8.0 - dpath=2.1.6 - dulwich=0.21.7 - - dvc=2.46.0 - - dvc-data=0.42.3 + - dvc=3.49.0 + - dvc-data=3.15.1 - dvc-gdrive=3.0.1 - dvc-http=2.32.0 - - dvc-objects=0.25.0 + - dvc-objects=5.1.0 - dvc-render=1.0.1 - dvc-studio-client=0.20.0 - dvc-task=0.4.0 + - entrypoints=0.4 - exceptiongroup=1.2.0 - - executing=2.0.1 - - expat=2.6.2 - - ffmpeg=4.3 + - expat=2.5.0 - filelock=3.13.1 - flatten-dict=0.4.2 - flufl.lock=7.1 - - fontconfig=2.14.2 - - fonttools=4.50.0 + - font-ttf-dejavu-sans-mono=2.37 + - font-ttf-inconsolata=2.001 + - font-ttf-source-code-pro=2.030 + - font-ttf-ubuntu=0.83 + - fontconfig=2.14.1 + - fonts-anaconda=1 + - fonts-conda-ecosystem=1 + - fonts-conda-forge=1 - freetype=2.12.1 - - frozenlist=1.4.1 + - fribidi=1.0.10 + - frozenlist=1.4.0 - fsspec=2024.3.1 - funcy=1.18 - - future=1.0.0 - - gitdb=4.0.11 - - gitpython=3.1.42 - - glib=2.78.4 - - glib-tools=2.78.4 - - gmp=6.2.1 - - gmpy2=2.1.2 - - gnutls=3.6.15 - - google-api-core=2.18.0 - - google-api-python-client=2.124.0 - - google-auth=2.29.0 + - future=0.18.3 + - gdk-pixbuf=2.42.10 + - giflib=5.2.2 + - gitdb=4.0.7 + - gitpython=3.1.37 + - glib=2.69.1 + - gmp=6.3.0 + - gobject-introspection=1.72.0 + - google-api-core=2.10.1 + - google-api-python-client=2.125.0 + - google-auth=2.6.0 - google-auth-httplib2=0.2.0 - - googleapis-common-protos=1.63.0 + - googleapis-common-protos=1.56.4 - grandalf=0.7 - - gst-plugins-base=1.14.1 - - gstreamer=1.14.1 + - graphite2=1.3.14 + - graphviz=2.50.0 + - gtk2=2.24.33 + - gto=1.7.1 + - gts=0.7.6 + - gudhi=3.9.0 + - harfbuzz=4.3.0 - httplib2=0.22.0 - hydra-core=1.3.2 - - icu=58.2 + - icu=73.1 - idna=3.4 - - importlib-metadata=7.1.0 - - importlib_metadata=7.1.0 - - importlib_resources=6.4.0 + - importlib-metadata=7.0.1 + - importlib_resources=6.1.1 - iniconfig=1.1.1 - intel-openmp=2023.1.0 - - ipykernel=6.29.3 - - ipython=8.22.2 - iterative-telemetry=0.0.8 - - jedi=0.19.1 - - jinja2=3.1.3 - jmespath=1.0.1 - jpeg=9e - - jupyter_client=8.6.1 - - jupyter_core=5.7.2 - keyutils=1.6.1 - - kiwisolver=1.4.5 - kombu=5.3.6 - - krb5=1.20.1 - - lame=3.100 + - krb5=1.21.2 - lcms2=2.12 - - ld_impl_linux-64=2.40 + - ld_impl_linux-64=2.38 - lerc=3.0 - - libabseil=20240116.1 - - libbrotlicommon=1.1.0 - - libbrotlidec=1.1.0 - - libbrotlienc=1.1.0 - - libclang=10.0.1 + - libblas=3.9.0 + - libboost=1.82.0 + - libcblas=3.9.0 - libcublas=12.1.0.26 - libcufft=11.0.2.4 - - libcufile=1.9.0.20 - - libcurand=10.3.5.119 + - libcufile=1.9.1.3 + - libcurand=10.3.5.147 + - libcurl=8.7.1 - libcusolver=11.4.4.55 - libcusparse=12.0.2.55 - libdeflate=1.17 - - libedit=3.1.20191231 - - libevent=2.1.12 - - libexpat=2.6.2 - - libffi=3.4.2 + - libedit=3.1.20230828 + - libev=4.33 + - libexpat=2.5.0 + - libffi=3.4.4 - libgcc-ng=13.2.0 + - libgd=2.3.3 + - libgfortran-ng=13.2.0 + - libgfortran5=13.2.0 - libgit2=1.7.2 - - libglib=2.78.4 - libgomp=13.2.0 - - libiconv=1.16 - - libidn2=2.3.4 - - libjpeg-turbo=2.0.0 - - libllvm10=10.0.1 + - libhwloc=2.9.0 + - liblapack=3.9.0 + - libnghttp2=1.58.0 - libnpp=12.0.2.50 - - libnsl=2.0.1 - libnvjitlink=12.1.105 - libnvjpeg=12.1.1.14 - libpng=1.6.39 - - libpq=12.17 - - libprotobuf=4.25.3 - - libsodium=1.0.18 - - libsqlite=3.45.2 + - libprotobuf=3.20.3 + - librsvg=2.54.4 + - libsqlite=3.41.2 - libssh2=1.11.0 - libstdcxx-ng=13.2.0 - - libtasn1=4.19.0 - libtiff=4.5.1 - - libunistring=0.9.10 - - libuuid=2.38.1 + - libtool=2.4.6 + - libuuid=1.41.5 + - libwebp=1.3.2 - libwebp-base=1.3.2 - - libxcb=1.16 - - libxcrypt=4.4.36 - - libxkbcommon=1.0.1 - - libxml2=2.9.14 + - libxcb=1.15 + - libxml2=2.10.4 - libzlib=1.2.13 - llvm-openmp=14.0.6 - lz4-c=1.9.4 - - markdown-it-py=3.0.0 - - markupsafe=2.1.3 - - matplotlib=3.8.0 - - matplotlib-base=3.8.0 - - matplotlib-inline=0.1.6 - - mdurl=0.1.2 + - markdown-it-py=2.2.0 + - mdurl=0.1.0 - mkl=2023.1.0 - mkl-service=2.4.0 - mkl_fft=1.3.8 - mkl_random=1.2.4 - - mpc=1.1.0 - - mpfr=4.0.2 - - mpmath=1.3.0 - - multidict=6.0.5 - - munkres=1.1.4 - - nanotime=0.5.2 + - mpfr=4.2.1 + - multidict=6.0.4 - ncurses=6.4.20240210 - - nest-asyncio=1.6.0 - - nettle=3.7.3 - networkx=3.1 - - nspr=4.35 - - nss=3.89.1 - - numexpr=2.8.7 + - ninja=1.10.2 + - ninja-base=1.10.2 - numpy=1.26.4 - numpy-base=1.26.4 - oauth2client=4.1.3 - omegaconf=2.3.0 - - openh264=2.1.1 - openjpeg=2.4.0 - openssl=3.2.1 - orjson=3.9.15 - - packaging=24.0 - - pandas=2.2.1 - - parso=0.8.3 - - pathlib2=2.3.7.post1 - - pathspec=0.12.1 - - pcre2=10.42 - - pexpect=4.9.0 - - pickleshare=0.7.5 + - packaging=23.2 + - pango=1.50.7 + - pathlib2=2.3.6 + - pathspec=0.10.3 + - pcre=8.45 + - pcre2=10.43 - pillow=10.2.0 - - pip=24.0 - - platformdirs=4.2.0 + - pixman=0.40.0 + - platformdirs=3.10.0 - pluggy=1.0.0 - - ply=3.11 - - prompt-toolkit=3.0.42 - - prompt_toolkit=3.0.42 - - proto-plus=1.23.0 - - protobuf=4.25.3 - - psutil=5.9.8 + - poppler=21.11.0 + - poppler-data=0.4.12 + - prompt-toolkit=3.0.43 + - prompt_toolkit=3.0.43 + - protobuf=3.20.3 + - psutil=5.9.0 - pthread-stubs=0.4 - - ptyprocess=0.7.0 - - pure_eval=0.2.2 - - pyasn1=0.5.1 - - pyasn1-modules=0.3.0 - - pycparser=2.22 - - pydot=1.2.4 + - pyasn1=0.4.8 + - pyasn1-modules=0.2.8 + - pycparser=2.21 + - pydantic=2.5.3 + - pydantic-core=2.14.6 + - pydot=1.4.1 - pydrive2=1.19.0 - pygit2=1.14.1 - - pygments=2.17.2 + - pygments=2.15.1 - pygtrie=2.5.0 - pyopenssl=24.0.0 - pyparsing=3.0.9 - - pyqt=5.15.10 - - pyqt5-sip=12.13.0 - pysocks=1.7.1 - pytest=7.4.0 - - python=3.11.8 - - python-dateutil=2.9.0 - - python-gssapi=1.8.2 + - python=3.10.14 + - python-dateutil=2.8.2 + - python-gssapi=1.8.3 - python-tzdata=2023.3 - - python_abi=3.11 - - pytorch=2.2.1 + - python_abi=3.10 + - pytorch=1.13.1 - pytorch-cuda=12.1 - pytorch-mutex=1.0 - - pytz=2023.3.post1 - pyu2f=0.1.5 - pywin32-on-windows=0.1.0 - pyyaml=6.0.1 - - pyzmq=25.1.2 - - qt-main=5.15.2 - readline=8.2 - requests=2.31.0 - - rich=13.7.1 - - rsa=4.9 - - ruamel.yaml=0.18.6 - - ruamel.yaml.clib=0.2.8 - - s3transfer=0.10.1 - - scmrepo=0.2.1 - - seaborn=0.12.2 - - setuptools=69.2.0 + - rich=13.3.5 + - rsa=4.7.2 + - ruamel.yaml=0.17.21 + - ruamel.yaml.clib=0.2.6 + - s3transfer=0.7.0 + - scipy=1.13.0 + - scmrepo=3.3.1 + - semver=3.0.2 + - setuptools=68.2.2 + - shellingham=1.5.0.post1 - shortuuid=1.0.13 - shtab=1.7.1 - - sip=6.7.12 - six=1.16.0 - - smmap=5.0.0 - - sqlite=3.45.2 + - smmap=4.0.0 + - sqlite=3.41.2 - sqltrie=0.11.0 - - stack_data=0.6.2 - - sympy=1.12 - tabulate=0.9.0 - tbb=2021.8.0 - - tk=8.6.13 + - tk=8.6.12 - tomli=2.0.1 - - tomlkit=0.12.4 - - torchaudio=2.2.1 - - torchtriton=2.2.0 - - torchvision=0.17.1 - - tornado=6.4 + - tomlkit=0.11.1 + - torchvision=0.15.2 - tqdm=4.65.0 - - traitlets=5.14.2 - - typing_extensions=4.10.0 + - typer=0.9.0 + - typing=3.10.0.0 + - typing-extensions=4.9.0 + - typing_extensions=4.9.0 - tzdata=2024a - uritemplate=4.1.1 - - urllib3=2.1.0 + - urllib3=2.0.7 - vine=5.1.0 - voluptuous=0.14.2 - - wcwidth=0.2.13 - - wheel=0.43.0 + - wcwidth=0.2.5 + - wheel=0.41.2 - xorg-libxau=1.0.11 - xorg-libxdmcp=1.1.3 - xz=5.4.6 - yaml=0.2.5 - - yarl=1.9.4 - - zc.lockfile=3.0.post1 - - zeromq=4.3.5 + - yarl=1.9.3 + - zc.lockfile=2.0 - zipp=3.17.0 - zlib=1.2.13 - zstd=1.5.5 + - pip: + - beautifulsoup4==4.12.3 + - giotto-ph==0.2.2 + - giotto-tda==0.6.0 + - igraph==0.11.4 + - pip==24.0 + - plotly==5.20.0 + - pot==0.8.2 + - pyflagser==0.4.5 + - soupsieve==2.5 + - texttable==1.7.0 + - torch-topological==0.1.7