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Support returning seqcoding using other aggregation functions. #6

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akanakia opened this issue May 24, 2023 · 0 comments

akanakia commented May 24, 2023

Currently def seqcoding(self, seqs, align=False) only supports generation of res_codings using res_to_seq(mode="mean") in line:

AbLang/ablang/pretrained.py

Line 112 in 6fc320d

    
           seq_codings = np.apply_along_axis(res_to_seq, 2, np.c_[np.swapaxes(residue_states,1,2), lens])

Consider updating the the seqcoding method to also allow changing the aggregation mode of "sum", which is supported by res_to_seq.

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