Repositories list

• yoda-portal

  Public
  Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonflaskyoda+ 1irods

  JavaScript

  •

  GNU General Public License v3.0

  •13•10•0•5•Updated Jan 7, 2025Jan 7, 2025

• yoda-ruleset

  Public
  iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyodairods

  Python

  •

  GNU General Public License v3.0

  •13•9•0•2•Updated Jan 7, 2025Jan 7, 2025

• src-component-galaxy

  Public
  Galaxy Workflow manager for SURF Research Cloud

  Jinja

  •

  GNU Lesser General Public License v2.1

  •3•0•5•1•Updated Jan 7, 2025Jan 7, 2025

• ricgraph

  Public
  Ricgraph - Research in context graph

  visualizationmetadataenrichment+ 14graphlinked-dataharvestknowledge-graphharvest-datagraph-databaseharvester+ 7

  Python

  •

  MIT License

  •4•27•0•0•Updated Jan 7, 2025Jan 7, 2025

• wildlifenl

  Public
  Back-end API for the WildlifeNL project.

  Go

  •

  Mozilla Public License 2.0

  •0•0•10•0•Updated Jan 7, 2025Jan 7, 2025

• msl_api

  Public
  PHP

  •1•0•0•8•Updated Jan 7, 2025Jan 7, 2025

• containerplatform-docs

  Public
  Container Platform public documentation

  Dockerfile

  •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

• yoda

  Public
  A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  ansibledataresearch+ 4yodairodsautomated-deploymentutrecht-university

  HTML

  •

  GNU General Public License v3.0

  •27•46•48•4•Updated Jan 6, 2025Jan 6, 2025

• epos-msl

  Public
  EPOS Multi-scale laboratories CKAN deployment

  redisansiblesolr+ 4postgresqlckanapache2epos

  Jinja

  •

  GNU General Public License v3.0

  •2•7•0•0•Updated Jan 6, 2025Jan 6, 2025

• researchcloud-items

  Public
  Installation scripts for SURF ResearchCloud catalog components

  ansible-roleresearch-cloud

  Jinja

  •

  GNU General Public License v3.0

  •4•8•12•1•Updated Jan 6, 2025Jan 6, 2025

• workshop-computational-reproducibility

  Public
  Material for the workshop 'Best Practices for Writing Reproducible Code'

  SCSS

  •

  Other

  •13•9•16•1•Updated Jan 6, 2025Jan 6, 2025

• PBfR_stats

  Public
  Code for creating a Quarto report of the Privacy Basics for Researchers module stats

  HTML

  •

  MIT License

  •0•0•1•0•Updated Jan 6, 2025Jan 6, 2025

• yoda-clienttools

  Public
  Client-side Yoda tools - mainly intended for data managers and key users

  yoda

  Python

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Dec 24, 2024Dec 24, 2024

• FSW-Openshift

  Public
  CSS

  •0•0•0•6•Updated Dec 24, 2024Dec 24, 2024

• ibridges-ansible

  Public
  Ansible modules for syncing data with iRODS using iBridges.

  Python

  •

  MIT License

  •0•1•4•1•Updated Dec 23, 2024Dec 23, 2024

• yoda-external-user-service

  Public
  A service that provides for external user enrollment and external user management via a HTTP API for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyoda

  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Dec 20, 2024Dec 20, 2024

• yoda-web-mock

  Public
  Mocks for web services that Yoda depends on.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• irods-consistency-check

  Public
  Check consistency between irods resource and on-disk vault.

  checksumirods

  Python

  •

  GNU General Public License v3.0

  •3•2•0•0•Updated Dec 20, 2024Dec 20, 2024

• dataQuest

  Public
  Python

  •

  MIT License

  •0•1•2•0•Updated Dec 19, 2024Dec 19, 2024

• vre-docs

  Public
  User documentation for Research Cloud tailored at UU researchers

  Lua

  •

  MIT License

  •1•1•12•0•Updated Dec 19, 2024Dec 19, 2024

• BioSecure_Task3.2_Swine_Model

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• src-component-sbgrid

  Public
  0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• Limesurvey-SAML-Authentication

  Public
  SAML Authentication Plugin for LimeSurvey 3.14+ forked to fix PHP session conflicts

  PHP

  •

  GNU General Public License v3.0

  •10•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• wildlifenl-research

  Public
  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•10•3•Updated Dec 16, 2024Dec 16, 2024

• wordpress-example-app

  Public
  How to deploy an wordpress app on openshift running in unpriviliged containers

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• PoC-scoping-review

  Public
  Scoping review of the methods to compute the "Probability of Causation (PoC)" or assigned share of an exposure as the cause of a multi-causal disease.

  R

  •

  MIT License

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• yoda-moai

  Public
  Yoda OAI-PMH endpoint: https://github.com/UtrechtUniversity/yoda

  oai-pmh

  Python

  •

  Other

  •21•1•0•0•Updated Dec 11, 2024Dec 11, 2024

• SRC-molecule

  Public
  A set of molecule configuration files to faciliate testing of SURF Research Cloud items.

  0•0•3•2•Updated Dec 9, 2024Dec 9, 2024

• .github

  Public
  The look and feel of Utrecht University on GitHub

  utrecht-universityreadme-profile

  Python

  •

  MIT License

  •1•1•0•0•Updated Dec 9, 2024Dec 9, 2024

• msl_vocabularies

  Public
  JavaScript

  •0•6•0•0•Updated Dec 6, 2024Dec 6, 2024