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    40 repositories

    • RW-2-BIO

      Public
      R
      •2•0•1•0•Updated Nov 16, 2024Nov 16, 2024

    • historic-modern-environment

      Public
      Environmental variables from historic and modern periods at the point and 8 km spatial resolutions
      R
      •
      MIT License
      •2•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • npp

      Public
      statistical modeling of tree rings to estimate biomass increment
      R
      •2•4•1•0•Updated Nov 1, 2023Nov 1, 2023

    • PalEON_MIP_ORNL_DAAC

      Public
      Scripts for Converting PalEON MIP output for ORNL DAAC
      Shell
      •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

    • linkages_package

      Public
      This repository holds fortan and R versions of version 1 of forest gap model LINKAGES (Pastor and Post 1983).
      Fortran
      •12•0•0•0•Updated May 30, 2023May 30, 2023

    • Bias-Estimation-Forest-Density

      Public
      Surveyor and analyst biases in the estimation of forest density from historical United States Public Land Surveys
      R
      •
      MIT License
      •0•1•0•0•Updated Apr 27, 2023Apr 27, 2023

    • pecan

      Public
      The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
      R
      •
      Other
      •235•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • composition-eastern-moretaxa

      Public
      Code for fitting the eastern PLS composition model to additional taxa
      R
      •0•0•0•0•Updated Sep 29, 2022Sep 29, 2022

    • ReFAB

      Public
      Reconstructing Forest Aboveground Biomass (ReFAB) is a codebase for reconstructing aboveground woody biomass from fossil pollen.
      R
      •0•4•0•0•Updated Apr 20, 2022Apr 20, 2022

    • RW-2-BIO-DEP

      Public
      R
      •2•0•0•0•Updated Feb 2, 2021Feb 2, 2021

    • EcosystemVariability

      Public
      Model-Data comparisons of ecosystem stability across space and time
      R
      •1•0•3•0•Updated Dec 7, 2020Dec 7, 2020

    • modeling_met_ensemble

      Public
      Generation of downscaled met driver ensemble for uncertainty analysis and data assimilation
      R
      •2•0•3•0•Updated Nov 6, 2020Nov 6, 2020

    • met_ensemble_paper

      Public
      Repository for analyses associated with the manuscript that will accompany the paper on the met downscaling
      R
      •0•0•0•0•Updated Apr 20, 2020Apr 20, 2020

    • env_regional

      Public
      Processing scripts & provenance for generation of PalEON MIP Regional Runs (MIP Phase 2).
      R
      •0•1•0•0•Updated Apr 20, 2020Apr 20, 2020

    • fading-record

      Public
      Test of the fading record correction using the FIA stem density versus mean stand diameter phase space diagram.
      HTML
      •1•0•0•0•Updated Mar 9, 2020Mar 9, 2020

    • PLS_products

      Public
      Produces gridded biomass, density, etc. products from point-level PLS data from Upper Midwest, southern Michigan, Indiana, Illinois.
      R
      •2•1•3•0•Updated Feb 20, 2020Feb 20, 2020

    • FIA_products

      Public
      Produces gridded biomass, density, etc. products from plot-level FIA data from PalEON domain.
      R
      •0•0•1•0•Updated Jan 18, 2020Jan 18, 2020

    • composition_paper

      Public
      materials for paper on statistical settlement vegetation composition product
      TeX
      •0•0•0•0•Updated Jan 6, 2020Jan 6, 2020

    • stepps-baconizing

      Public
      Data, code, and output from the Bacon age-depth models developed for use in the STEPPS prediction runs.
      HTML
      •0•0•8•0•Updated Nov 15, 2019Nov 15, 2019

    • PalEON-soils

      Public
      Repository for aggregation of soils data across the PalEON domain
      Python
      •0•0•1•0•Updated Sep 27, 2019Sep 27, 2019

    • IN_ILTownshipChecker

      Public
      Notre Dame's R code to run QA/QC on Indiana and Illinois PLS data
      R
      •0•0•0•0•Updated Aug 5, 2019Aug 5, 2019

    • STEPPS-prediction-Ecology

      Public
      This repository contains the code that accompanies the publication titled "Quantifying trends and uncertainty in prehistoric forest composition in the Upper Midwestern United States", accepted for publication in Ecology.
      R
      •
      MIT License
      •0•1•0•0•Updated Jul 24, 2019Jul 24, 2019

    • YellowRiver_Indiana

      Public
      Caitlin Broderick's analyses comparing historical (PLS) and modern forest structure and composition in the Yellow River watershed, Indiana.
      R
      •
      MIT License
      •1•1•0•0•Updated May 16, 2018May 16, 2018

    • stepps-cal

      Public
      A repository for the R package intended to carry out STEPPS calibration.
      r-packagepaleoecologyneotoma-databasecalibrationreconstruction
      R
      •
      Other
      •5•0•3•0•Updated Apr 21, 2018Apr 21, 2018

    • stepps-calibration

      Public
      STEPPS pollen-veg calibration model code and paper.
      R
      •1•0•6•0•Updated Apr 13, 2018Apr 13, 2018

    • Plotless_Density_Estimators

      Public
      Tree patterns were simulated from known spatial point processes and sampled in R.
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2018Mar 15, 2018

    • biomass_product_paper

      Public
      Repository for product-focused paper on FIA and PLS biomass
      TeX
      •0•0•0•0•Updated Feb 10, 2018Feb 10, 2018

    • PalEON-FIA

      Public
      Code to take the FIA composition, density, and biomass data and aggregate it to the PalEON grid
      R
      •3•0•7•0•Updated Dec 14, 2017Dec 14, 2017

    • PalEON_MIP2_Region

      Public
      General scripts for accessing & synthesizing ecosystem model output from the PalEON Regional MIP
      R
      •1•0•0•1•Updated Aug 14, 2017Aug 14, 2017

    • Temporal-Scaling-MS

      Public
      MIP paper looking differences drivers of ecosystem variation among models and temporal scales
      R
      •0•0•1•0•Updated Jun 18, 2017Jun 18, 2017