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    185 repositories

    • knox

      Public
      Full stack application for creating, combining, and storing combinatorial genetic design spaces.
      graph-algorithmssynthetic-biologycombinatorial-algorithmsgenetic-design
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •10•11•10•5•Updated Oct 15, 2024Oct 15, 2024

    • Vespa-Algorithm

      Public
      Python
      •1•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • 3DuF

      Public
      Interactive microfluidic design editor
      microfluidicsfluigi
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •71•75•57•34•Updated Sep 24, 2024Sep 24, 2024

    • Cello-v2-1-Core

      Public
      Streamlined Cello Algorithm. Feed it Verilog and UCF from CIDARLAB/CELLO-UCF, and run celloAlgo.py in terminal to make genetic circuit designs locally on your machine.
      Python
      •
      Apache License 2.0
      •7•10•0•0•Updated Sep 16, 2024Sep 16, 2024

    • Oriole

      Public
      Verilog
      •2•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • constellation-js

      Public
      Library for combinatorially specifying, constraining, and exploring genetic design spaces.
      JavaScript
      •
      MIT License
      •8•1•0•1•Updated Aug 26, 2024Aug 26, 2024

    • goldbar-generator

      Public
      Tool for GOLDBAR Generation using Rule Templates
      synthetic-biology
      Python
      •0•1•0•0•Updated Aug 26, 2024Aug 26, 2024

    • dafd-website

      Public
      Python
      •1•3•0•9•Updated Aug 6, 2024Aug 6, 2024

    • pyMINT

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•4•1•Updated Jul 26, 2024Jul 26, 2024

    • pyparchmint

      Public
      pyparchmint is the defacto object library for describing microfluidic device architectures. It contains the base datastructures for provisioning physical layout descriptions of microfluidic devices.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•2•2•4•Updated May 22, 2024May 22, 2024

    • pigeon

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•6•5•Updated Mar 23, 2024Mar 23, 2024

    • pyFluigi

      Public
      C++
      •5•0•1•1•Updated Mar 18, 2024Mar 18, 2024

    • mint-parchmint-scripts

      Public
      Python
      •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • pyLFR

      Public
      Python
      •3•3•12•3•Updated Oct 23, 2023Oct 23, 2023

    • Microfluidics-Benchmarks

      Public
      Consolidated Repo of Test Cases and Benchmarks
      Mint
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•2•Updated Oct 20, 2023Oct 20, 2023

    • UCFormatter

      Public
      modify and visualize UCF files containing genetic part specifications
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 11, 2023Jun 11, 2023

    • genetic-circuit-partitioning-new

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated May 28, 2023May 28, 2023

    • pycello-v2

      Public
      Python classes for Cello v2 input and output formats, namely the netlist and the UCF.
      Python
      •1•0•0•1•Updated May 22, 2023May 22, 2023

    • drop2image

      Public
      HTML
      •0•0•0•0•Updated May 11, 2023May 11, 2023

    • Peripheral-Manager

      Public
      Talk to USB devices from the browser
      httpflaskmiddlewarehardwaresocket-iobridge
      Python
      •
      BSD 2-Clause "Simplified" License
      •2•2•1•2•Updated May 1, 2023May 1, 2023

    • DAFD_Metrics

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 5, 2023Mar 5, 2023

    • Neptune

      Public
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •6•6•16•1•Updated Feb 19, 2023Feb 19, 2023

    • neural-optimizer

      Public
      Python
      •2•3•0•8•Updated Feb 2, 2023Feb 2, 2023

    • Cello-v2-webapp-gui

      Public
      This is the source for the GUI that supports the Cello v2 webapp. This repository exists only for development purposes. If you want to use the GUI, either visit http://cellocad.org to interact with a running instance, or https://github.com/CIDARLAB/Cello-v2-webapp for instructions on running a Docker image or building the webapp from source.
      guisynthetic-biologywebappcellogenetic-circuit-design-automationbio-design-automation
      JavaScript
      •2•1•5•19•Updated Jan 7, 2023Jan 7, 2023

    • DAFD

      Public
      Python
      •7•15•0•14•Updated Dec 8, 2022Dec 8, 2022

    • SS-Analyzer

      Public
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•3•Updated Dec 8, 2022Dec 8, 2022

    • genetic-circuit-partitioning

      Public
      Partitioning a randomly sythesized graph, or
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 14, 2022Nov 14, 2022

    • eugenecad

      Public
      The web site of the Eugene ecosystem
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Oct 26, 2022Oct 26, 2022

    • eugene-v2.0

      Public
      v2.0 of the Eugene Language project [under development]
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •3•6•8•4•Updated Oct 4, 2022Oct 4, 2022

    • cello

      Public
      Genetic circuit design automation
      synthetic-biologygenetic-circuit-design-automationboolean-logicbio-design-automationcircuitcello
      Java
      •
      BSD 2-Clause "Simplified" License
      •137•809•30•8•Updated Sep 19, 2022Sep 19, 2022