12_03_patentGetEntities_Count.ttl

@base <http://www.openphacts.org/api> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix api: <http://purl.org/linked-data/api/vocab#> .
@prefix schembl: <http://rdf.ebi.ac.uk/terms/surechembl#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix ops: <http://www.openphacts.org/api#> .
@prefix void: <http://rdfs.org/ns/void#> .

<#patent> a api:API ;
	rdfs:label "Patent"@en ;
	api:sparqlEndpoint <http://alpha.openphacts.org:8890/sparql/> ;
	api:contentNegotiation api:parameterBased ;
	api:variable <#input> ;
	api:variable schembl:SCCO_000028 ;
	api:variable schembl:SCCO_000038 ;
	api:variable _:type ;
	api:variable _:title ;
	api:variable _:abstract ;
	api:variable _:description ;
	api:variable _:claims ;
	api:variable _:image ;
	api:variable _:cwu ;
	api:description "An API configuration to return information about patents" ;
	api:endpoint [
		a api:ItemEndpoint ;
		api:name "Patent Entities: Count" ;
		api:description "Returns the number of entities that are mentioned in the user specified patent.";
		api:uriTemplate "/patent/entities/count?uri={uri}" ;
		api:itemTemplate "{uri}" ;
		api:variable <http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000010> ;
		api:variable <http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000035> ;
		api:variable <http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000036> ;
		api:exampleRequestPath "/patent/entities/count?uri=http%3A%2F%2Frdf.ebi.ac.uk%2Fresource%2Fsurechembl%2Fpatent%2FEP-1339685-A2";
		api:viewer <#patentEntitiesCountViewer> ;
		api:defaultViewer <#patentEntitiesCountViewer> ] .

<#input> api:name "uri" ;
	api:label "uri";
	api:value "A patent URI. e.g.: http://rdf.ebi.ac.uk/resource/surechembl/patent/EP-1339685-A2" ;
	rdfs:range rdfs:Resource .

schembl:SCCO_000028 api:name "score" ;
	api:label "score" ;
	api:filterVariable "?assoc" ;
	api:value "Only return entities mentioned in the patent whose relevance score is equal to this number. An integer between 0 and 3." ;
	a rdf:Property .

schembl:SCCO_000038 api:name "frequency" ;
        api:label "frequency" ;
        api:filterVariable "?assoc" ;
        api:value "Only return entites mentioned in the patent with frequency equal to this number. A positive integer." ;
	a rdf:Property .

_:type api:name "entity_type" ;
	api:label "entity_type" ;
	api:filterVariable "?entity_type" ;
	api:value "Only return entities of the specified type (and are mentioned in the patent). One of: 'molecule', 'target', 'disease'." ;
	rdfs:subPropertyOf api:graphFilter ;
	a rdf:Property .

_:title api:name "title" ;
        api:label "title" ;
        api:filterVariable "?title_occ" ;
        api:value "If set to 'true' the method returns only entities mentioned in the title of the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

_:abstract api:name "abstract" ;
	api:label "abstract" ;
	api:filterVariable "?abstract_occ" ;
	api:value "If set to 'true' the method returns only entities mentioned in the abstract of the patent." ;
	rdfs:subPropertyOf api:graphFilter ;
	a rdf:Property .

_:description api:name "description" ;
        api:label "description" ;
        api:filterVariable "?desc_occ" ;
        api:value "If set to 'true' the method returns only entities mentioned in the description section of the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

_:claims api:name "claims" ;
        api:label "claims" ;
        api:filterVariable "?claims_occ" ;
        api:value "If set to 'true' the method returns only entities mentioned in the claims section of the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

_:image api:name "image" ;
        api:label "image" ;
        api:filterVariable "?image_occ" ;
        api:value "If set to 'true' the method returns only entities in an image in the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

_:cwu api:name "cwu" ;
        api:label "cwu" ;
        api:filterVariable "?cwu_occ" ;
        api:value "If set to 'true' the method returns only entities mentioned in a CWU of the patent." ;
        rdfs:subPropertyOf api:graphFilter ;
        a rdf:Property .

<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000010> api:name "molecule" .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000035> api:name "target" .
<http://rdf.ebi.ac.uk/terms/surechembl#SCCO_000036> api:name "disease" .

<#patentEntitiesCountViewer> a api:Viewer ;
	api:name "patentEntitiesCountViewer" ;
	api:template
"
?patent_uri ops:entityCount ?count ;
	void:inDataset <http://www.ebi.ac.uk/surechembl> .
" ;
	api:where
"
{ SELECT DISTINCT ?patent_uri ( COUNT ( ?entity ) AS ?count ) WHERE {
	GRAPH <http://www.ebi.ac.uk/surechembl> {
		?patent_uri a schembl:SCCO_000002 ;
		schembl:SCCO_000007 ?date .
		OPTIONAL {
			?patent_uri schembl:SCCO_000005 ?title_res .
			?title_res schembl:SCCO_000030 ?title ;
			schembl:SCCO_000031 'EN' .
		}
		OPTIONAL {
			?assoc schembl:SCCO_000020 ?patent_uri ;
			schembl:SCCO_000021 ?entity ;
			schembl:SCCO_000028 ?rel_score ;
			schembl:SCCO_000038 ?freq .
			?entity a ?entity_type .
			OPTIONAL { ?assoc schembl:SCCO_000022 ?desc_occ_tmp }
			OPTIONAL { ?assoc schembl:SCCO_000023 ?title_occ_tmp }
			OPTIONAL { ?assoc schembl:SCCO_000024 ?claims_occ_tmp }
			OPTIONAL { ?assoc schembl:SCCO_000025 ?abstract_occ_tmp }
			OPTIONAL { ?assoc schembl:SCCO_000026 ?image_occ_tmp }
			OPTIONAL { ?assoc schembl:SCCO_000027 ?cwu_occ_tmp }
			OPTIONAL { ?entity schembl:SCCO_000037 ?entity_name }
			OPTIONAL { ?entity schembl:SCCO_000017 ?entity_smiles }
		}
		BIND ( IF( ?desc_occ_tmp = true, true, false ) AS ?desc_occ )
		BIND ( IF( ?title_occ_tmp = true, true, false ) AS ?title_occ )
		BIND ( IF( ?claims_occ_tmp = true, true, false ) AS ?claims_occ )
		BIND ( IF( ?abstract_occ_tmp = true, true, false ) AS ?abstract_occ )
		BIND ( IF( ?image_occ_tmp = true, true, false ) AS ?image_occ )
		BIND ( IF( ?cwu_occ_tmp = true, true, false ) AS ?cwu_occ )
	}
} }
".