05_07_associationsByDisease_Count.ttl

@base <http://www.openphacts.org/api> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix dcterms: <http://purl.org/dc/terms/>.
@prefix api: <http://purl.org/linked-data/api/vocab#> .
@prefix rel: <http://vocab.org/relationship/> .
@prefix void: <http://rdfs.org/ns/void#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix sio: <http://semanticscience.org/resource/> .
@prefix ops: <http://www.openphacts.org/api#> .
@prefix cito: <http://purl.org/spar/cito/> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix ncit: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> .
@prefix uniprot: <http://purl.uniprot.org/core/> .

<#assocByDiseaseCount> a api:API ;
        rdfs:label "Disease"@en ;
        api:sparqlEndpoint <http://alpha.openphacts.org:8890/sparql/> ;
        api:contentNegotiation api:parameterBased ;
        api:variable <#input> ;
	api:dataset <http://rdf.imim.es> ;
	api:vocabulary <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> ;
	api:vocabulary <http://semanticscience.org/resource/> ;
	api:description "An API configuration to return information about diseases" ;
	api:endpoint [
		a api:ItemEndpoint ;
		api:name "Associations for Disease: Count" ;
		api:description "A list of associations which correspond to the disease {uri}.";
		api:uriTemplate "/disease/assoc/byDisease/count?uri={uri}" ;
	        api:itemTemplate "{uri}" ;
		api:exampleRequestPath "/disease/assoc/byDisease/count?uri=http%3A%2F%2Flinkedlifedata.com%2Fresource%2Fumls%2Fid%2FC0004238" ;
		api:viewer <#assocByDiseaseCountViewer> ;
		api:defaultViewer <#assocByDiseaseCountViewer> . ] .

<http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> api:label "ncit" .
<http://semanticscience.org/resource/> api:label "sio" .

<#input> api:name "uri" ;
        api:label "uri";
        api:value "A disease URI. e.g.: http://linkedlifedata.com/resource/umls/id/C0004238" ;
        rdfs:range rdfs:Resource .

<#assocByDiseaseCountViewer> a api:Viewer ;
	api:name "assocByDiseaseCountViewer" ;
	api:template
"?ops_item ops:associationsCount ?count .";
	api:where
"{ SELECT (COUNT(DISTINCT ?item) AS ?count) {
GRAPH <http://rdf.imim.es> {
	?item rdf:type ?type ;
		sio:SIO_000628 ?umls_disease_uri ;
		sio:SIO_000253 ?primarySource ;
		void:inDataset ?assocDataset .

	?umls_disease_uri sio:SIO_000095 ?diseaseClass ;
		foaf:name ?diseaseName ;
		void:inDataset ?diseaseDataset .
	?diseaseClass foaf:name ?diseaseClassName ;
		void:inDataset ?diseaseClassDataset .

	?type rdfs:label ?type_label .
	?item sio:SIO_000628 ?gene_uri .
	?gene_uri a ncit:C16612 ;
		sio:SIO_010078 ?dg_uniprot_uri ;
		void:inDataset ?geneDataset .

	OPTIONAL { ?item dcterms:description ?description .}
	OPTIONAL { ?item sio:SIO_000772 ?pubmed_id . }
}
}}" .