04_03_pathwayInfo.ttl

@base <http://www.openphacts.org/api> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix dcterms: <http://purl.org/dc/terms/>.
@prefix api: <http://purl.org/linked-data/api/vocab#> .
@prefix rel: <http://vocab.org/relationship/> .
@prefix void: <http://rdfs.org/ns/void#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix drugbank: <http://bio2rdf.org/drugbank_vocabulary:> .
@prefix sio: <http://semanticscience.org/resource/>
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix cheminf: <http://semanticscience.org/resource/> .
@prefix qudt: <http://qudt.org/1.1/schema/qudt#> .
@prefix ops: <http://www.openphacts.org/api#> .
@prefix cito: <http://purl.org/spar/cito/> .
@prefix wp: <http://vocabularies.wikipathways.org/wp#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix sioc: <http://sioc-project.org/ontology#> .

<#pathway> a api:API ;
        rdfs:label "Pathway"@en ;
        api:sparqlEndpoint <http://alpha.openphacts.org:8890/sparql/> ;
        api:contentNegotiation api:parameterBased ;
        api:variable <#input> ;
	api:dataset <http://www.wikipathways.org> ;
	api:vocabulary <http://vocabularies.wikipathways.org/wp#> ;
	api:vocabulary <http://xmlns.com/foaf/0.1/> ;
	api:vocabulary <http://purl.org/dc/elements/1.1/> ;
	api:vocabulary <http://purl.org/dc/terms/> ;
	api:description "An API configuration to return information about pathways." ;
	api:endpoint [
		a api:ItemEndpoint ;
		api:name "Pathway Information" ;
		api:description "Information about a single pathway.";
		api:uriTemplate "/pathway?uri={uri}" ;
	        api:itemTemplate "{uri}" ;
		api:exampleRequestPath "/pathway?uri=http%3A%2F%2Fidentifiers.org%2Fwikipathways%2FWP176" ;
		api:viewer <#pathwayViewer> ;
		api:defaultViewer <#pathwayViewer> . ] .

<http://www.wikipathways.org> api:label "WikiPathways" .

<http://vocabularies.wikipathways.org/wp#> api:label "wikipathways" .
<http://xmlns.com/foaf/0.1/> api:label "foaf" .
<http://purl.org/dc/elements/1.1/> api:label "dc" .
<http://purl.org/dc/terms/> api:label "dcterms" .

<#input> api:name "uri" ;
	api:label "uri";
	api:value "A Pathway URI. e.g.: http://identifiers.org/wikipathways/WP1019" ;
	rdfs:range rdfs:Resource .

<#pathwayViewer> a api:Viewer ;
	api:name "pathwayViewer" ;
	api:template
"?ops_item skos:exactMatch ?pw_uri .
?pw_uri sioc:latest_version ?rev ;
        void:inDataset <http://www.wikipathways.org>.
?rev dc:title ?title ;
	wp:organism ?organism_uri ;
	foaf:page ?page ;
	dcterms:description ?description ;
	wp:pathwayOntology ?ontology ;
	dcterms:hasPart ?part ;
	void:inDataset <http://www.wikipathways.org> .
?organism_uri rdfs:label ?organism .
?part a ?type .
";
	api:where
"GRAPH <http://www.wikipathways.org> {
	?rev dc:identifier ?pw_uri ;
		wp:organism ?organism_uri ;
		foaf:page ?page ;
		dc:title ?title ;
		wp:organismName ?organism .
	?part_internal dcterms:isPartOf ?rev ;
		a ?type ;
		dc:identifier ?part .
	OPTIONAL { ?rev dcterms:description ?description }
	OPTIONAL { ?rev wp:pathwayOntology ?ontology }
	OPTIONAL { ?reference dcterms:isPartOf ?rev ;
			a wp:PublicationReference }
	FILTER (!regex(?part,'noIdentifier'))
	FILTER (?type = wp:Protein || ?type = wp:GeneProduct || ?type = wp:Metabolite || ?type = wp:Reference )
}" .