diff --git a/README.md b/README.md index ea5120e08..7b0880790 100644 --- a/README.md +++ b/README.md @@ -3,5 +3,145 @@ openmrs-module-emrapi ==================== -Higher-level APIs to support building EMR functionality in OpenMRS, to supplement the data-level APIs - in the OpenMRS core. \ No newline at end of file +Higher-level APIs to support building EMR functionality in OpenMRS, to supplement the data-level APIs in the OpenMRS core. + +# Dependencies + +## Required core version + +* 2.2.1 + +## Required modules + +* reporting (+ serialization.xstream, htmlwidgets, calculation) +* providermanagement +* metadatamapping +* event +* webservices.rest + +## Aware of modules + +* fhir2 +* metadatasharing + +# Configuration + +* EmrApiProperties + EmrApiConstants wraps much of the configuration, much of which is in GPs and metadata mappings + +# Startup + +* Creates a role named "Privilege Level: Full", if it doesn't exist, and ensures it has every privilege that does not start with "App:" or "Task:" +* Creates a role named "Privilege Level: High", if it doesn't exist, and ensures it has every privilege that does not start with "App:" or "Task:" and is not in a list of "unsafe" privileges +* Creates metadata source, metadata mappings, and metadata sets that are required for the configuration +* Creates an "Unknown Provider" provider if it does not exist +* Sets default visit assignment handler via global property +* Sets up the patient viewed event listener subscription +* Ensures the person image folder exists + +# API + +## account + +* AccountDomainWrapper - wrapper for Person + User + Provider with methods for getting and manipulating account-related data +* AccountService - CRUD operations for AccountDomainWrapper and opinionated methods for getting roles and privileges +* AccountValidator - validates an AccountDomainWrapper +* ProviderIdentifierGenerator - interface for generating a provider identifier + +## adt + +* Provides higher level APIs around Admission, Discharge, and Transfer +* These are based on the "Disposition" configuration in DispositionService / DispositionDescriptor and metadata in EmrApiProperties +* A/D/T based around specific encounter type and optional form +* Provides an implementation of automatically creating visits and assigning encounters to visits with appropriate visit types, if no visit is associated with the encounter +* Provides an implementation of closing "stale" visits and a scheduled task to automate this +* Provides additional service methods to manage visits, ensure active visit, deal with overlapping visits, manage visit locations, enter retrospective visits +* Provides implementations for merging patients and merging visits +* Provides APIs for creating checkin encounters, adt encounters, and identify and get inpatient visits + +* (reporting module) definitions and evaluators for getting: + * AwaitingAdmissionVisitQuery - any Visits that are in the state of "awaiting admission" + * MostRecentAdmissionRequestVisitDataDefinition - data from a Visit relevant for "admission request" + +## concept + +* Provides additional service methods for getting and searching for concepts + +## db + +* Various utility classes for dealing with DB and Hibernate queries and access and DAO implementations in support of other services + +## descriptor + +* Utilities for working defining concept sets and members and creating and manipulating obs groups + +## diagnosis + +* Diagnosis and CodedOrFreeTextAnswer wrapper classes to represent a diagnosis as a concept set / obs group +* Deprecated services and utility classes (is core as of 2.2) related to Diagnosis + +## disposition + +* Concept Set / Obs Group specification for modeling a disposition +* Configuration relating disposition to Admission / Discharge / Transfer +* Json parsing and handling specification for reading in a dispositionConfig.json that determines how disposition obs behave +* Services and DispositionAction interface and implementations for performing operations as a result of a disposition + +## domainwrapper + +* Utility classes for creating and manaing domain wrapper classes + +## encounter + +* EncounterTransaction that provides a json model object for encounter, obs, order, diagnosis, disposition, providers, and additional extensions and context +* Mappers to convert to/from data and EncounterTransaction / json +* Matcher interface and base implementations to find an existing Encounter given a set of parameters +* Processor interface for reading and saving Encounter and EncounterTransaction +* Service methods to leverage the other entities to enable saving/finding/retrieving encounters based on the EncounterTransaction construct +* Logic for handling evolution of Orders through to OpenMRS 1.9 + +## event + +* Basic interface and implementation for publishing events with the event module whenever a user views a patient +* Event listener on patient view events to track in the user's property of emrapi.lastViewedPatientIds + +## exitfromcare + +* Service with methods to close/reopen programs, visits, patient death information + +## merge + +* Interfaces for PatientMergeAction and VisitMergeAction, used within the merge methods in the adt package +* Should really have this and the service methods in the adt package together + +## metadata + +* Utility classes for mds import specifications, likely no longer used + +## patient + +* PatientDomainWrapper - convenience methods around Patient and related tables, including primary identifier, telephone number, unknown patient, and test patient +* EmrPatientProfileService - allows associating a patient with a PersonImage +* EmrPatientService - methods to find patients by visit location or primary identifier +* (reporting module) definitions and evaluators for getting patient Primary Identifier + +## person + +* Services and convenience entities for saving person images to a configurable directory + +## test + +* Convenience classes for constructing concepts, concept data types, and obs + +## utils + +* Utility classes / functions in support of the other packages as needed + +## visit + +* Service and parameter objects to find visits and return associated EncounterTransactions in that visit +* Service methods to get diagnoses obs and patients with particular diagnoses +* VisitDomainWrapper - convenience wrapper to get info around active / open status, encounters contained, diagnoses, dispositions, ADT status + +# condition-list + +This provides an implementation of condition list functionality, but condition was added to core in 2.2, so this is likely no longer needed diff --git a/api-1.10/pom.xml b/api-1.10/pom.xml deleted file mode 100644 index 1dc10ba2c..000000000 --- a/api-1.10/pom.xml +++ /dev/null @@ -1,99 +0,0 @@ - - 4.0.0 - - - org.openmrs.module - emrapi - 1.37.0-SNAPSHOT - - - emrapi-api-1.10 - jar - EMR API Module API 1.10 - API project for EMRAPI - - - 1.10.2 - - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - provided - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - provided - - - javassist - javassist - - - - - - org.openmrs.api - openmrs-api - test-jar - ${openMRSVersion} - test - - - javassist - javassist - - - - - - org.openmrs.test - openmrs-test - ${openMRSVersion} - pom - test - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-pre2.2 - ${project.parent.version} - provided - - - - - - - - src/main/resources - true - - - - - - src/test/resources - - **/*.properties - **/*.xml - - true - - - src/test/resources - - **/*.properties - **/*.xml - - false - - - - - diff --git a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_10.java b/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_10.java deleted file mode 100644 index a082a71cd..000000000 --- a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_10.java +++ /dev/null @@ -1,61 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter; - -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.api.EncounterService; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSDrugOrderMapper; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSOrderMapper; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Service; - -import java.util.LinkedHashSet; -import java.util.List; - -@Service(value = "emrOrderService") -@OpenmrsProfile(openmrsPlatformVersion = "1.10.*") -public class EmrOrderServiceImpl_1_10 implements EmrOrderService { - private final OpenMRSDrugOrderMapper openMRSDrugOrderMapper; - private final EncounterService encounterService; - private final OpenMRSOrderMapper openMRSOrderMapper; - - @Autowired - public EmrOrderServiceImpl_1_10(OpenMRSDrugOrderMapper openMRSDrugOrderMapper, EncounterService encounterService, OpenMRSOrderMapper openMRSOrderMapper) { - this.openMRSDrugOrderMapper = openMRSDrugOrderMapper; - this.encounterService = encounterService; - this.openMRSOrderMapper = openMRSOrderMapper; - } - - @Override - public void save(List drugOrders, Encounter encounter) { - encounter.setOrders(new LinkedHashSet(encounter.getOrders())); - for (EncounterTransaction.DrugOrder drugOrder : drugOrders) { - DrugOrder omrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - encounter.addOrder(omrsDrugOrder); - } - encounterService.saveEncounter(encounter); - } - - @Override - public void saveOrders(List orders, Encounter encounter) { - for (EncounterTransaction.Order order : orders) { - Order omrsOrder = openMRSOrderMapper.map(order, encounter); - encounter.addOrder(omrsOrder); - } - encounterService.saveEncounter(encounter); - } - -} diff --git a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java b/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java deleted file mode 100644 index aaf5eaef6..000000000 --- a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java +++ /dev/null @@ -1,48 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.api.ConceptService; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -public class DosingInstructionsMapper { - private ConceptService conceptService; - private OrderMetadataService orderMetadataService; - - public DosingInstructionsMapper(ConceptService conceptService, OrderMetadataService orderMetadataService) { - this.conceptService = conceptService; - this.orderMetadataService = orderMetadataService; - } - - public DrugOrder map(EncounterTransaction.DosingInstructions dosingInstructions, DrugOrder drugOrder) { - drugOrder.setDose(dosingInstructions.getDose()); - drugOrder.setDoseUnits(conceptByName(dosingInstructions.getDoseUnits())); - drugOrder.setDosingInstructions(dosingInstructions.getAdministrationInstructions()); - drugOrder.setRoute(conceptByName(dosingInstructions.getRoute())); - drugOrder.setAsNeeded(dosingInstructions.getAsNeeded()); - drugOrder.setFrequency(orderMetadataService.getOrderFrequencyByName(dosingInstructions.getFrequency(), false)); - drugOrder.setQuantity(Double.valueOf(dosingInstructions.getQuantity())); - drugOrder.setQuantityUnits(conceptByName(dosingInstructions.getQuantityUnits())); - Integer numberOfRefills = dosingInstructions.getNumberOfRefills(); - drugOrder.setNumRefills(numberOfRefills == null? 0: numberOfRefills); - return drugOrder; - } - - private Concept conceptByName(String name) { - return conceptService.getConceptByName(name); - } -} diff --git a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_10.java b/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_10.java deleted file mode 100644 index a599d99ed..000000000 --- a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_10.java +++ /dev/null @@ -1,38 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - - -import org.openmrs.Drug; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.encounter.DrugMapper; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.stereotype.Component; - -@Component(value = "drugMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.10.*") -public class DrugMapper1_10 implements DrugMapper { - - public EncounterTransaction.Drug map(Drug drug){ - EncounterTransaction.Drug encounterTransactionDrug = new EncounterTransaction.Drug(); - encounterTransactionDrug.setName(drug.getDisplayName()); - if (drug.getDosageForm() != null) { - encounterTransactionDrug.setForm(drug.getDosageForm().getName().getName()); - } - encounterTransactionDrug.setStrength(drug.getStrength()); - encounterTransactionDrug.setUuid(drug.getUuid()); - return encounterTransactionDrug; - } - -} diff --git a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java b/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java deleted file mode 100644 index 66c1f9c06..000000000 --- a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java +++ /dev/null @@ -1,125 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.StringUtils; -import org.openmrs.CareSetting; -import org.openmrs.DosingInstructions; -import org.openmrs.Drug; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.Provider; -import org.openmrs.api.APIException; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.api.context.Context; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -/** - * OpenMRSDrugOrderMapper. - * Maps EncounterTransaction DrugOrder to OpenMRS DrugOrders. - *

- * Version 1.0 - */ -public class OpenMRSDrugOrderMapper { - - private OrderService orderService; - private ConceptService conceptService; - private DosingInstructionsMapper dosingInstructionsMapper; - private OrderMetadataService orderMetadataService; - public static final Order.Urgency DEFAULT_URGENCY = Order.Urgency.ROUTINE; - - public OpenMRSDrugOrderMapper(OrderService orderService, ConceptService conceptService, - DosingInstructionsMapper dosingInstructionsMapper, OrderMetadataService orderMetadataService) { - this.orderService = orderService; - this.conceptService = conceptService; - this.dosingInstructionsMapper = dosingInstructionsMapper; - this.orderMetadataService = orderMetadataService; - } - - public DrugOrder map(EncounterTransaction.DrugOrder drugOrder, Encounter encounter) { - DrugOrder openMRSDrugOrder = createDrugOrder(drugOrder); - openMRSDrugOrder.setCareSetting(getCareSettingFrom(drugOrder, openMRSDrugOrder)); - - Drug drug = getDrugFrom(drugOrder, openMRSDrugOrder); - - if (drug == null) { - throw new APIException("No such drug : " + drugOrder.getDrug().getName()); - } - if(drug.isRetired() && !isDiscontinuationDrugOrder(drugOrder)){ - throw new APIException("Drug has been retired : " + drugOrder.getDrug().getName()); - } - openMRSDrugOrder.setDrug(drug); - openMRSDrugOrder.setEncounter(encounter); - - openMRSDrugOrder.setDateActivated(drugOrder.getDateActivated()); - openMRSDrugOrder.setScheduledDate(drugOrder.getScheduledDate()); - openMRSDrugOrder.setUrgency(drugOrder.getScheduledDate() != null ? Order.Urgency.ON_SCHEDULED_DATE : DEFAULT_URGENCY); - openMRSDrugOrder.setDuration(drugOrder.getDuration()); - openMRSDrugOrder.setDurationUnits(orderMetadataService.getDurationUnitsConceptByName(drugOrder.getDurationUnits())); - openMRSDrugOrder.setAutoExpireDate(drugOrder.getAutoExpireDate()); - - try { - if (drugOrder.getDosingInstructionType() != null) { - openMRSDrugOrder.setDosingType((Class) Context.loadClass(drugOrder.getDosingInstructionType())); - } - } catch (ClassNotFoundException e) { - throw new APIException("Class not found for : DosingInstructionType " + drugOrder.getDosingInstructionType(), e); - } - - dosingInstructionsMapper.map(drugOrder.getDosingInstructions(), openMRSDrugOrder); - openMRSDrugOrder.setInstructions(drugOrder.getInstructions()); - Provider provider = encounter.getEncounterProviders().iterator().next().getProvider(); - openMRSDrugOrder.setOrderer(provider); - return openMRSDrugOrder; - } - - private boolean isNewDrugOrder(EncounterTransaction.DrugOrder drugOrder) { - return StringUtils.isBlank(drugOrder.getPreviousOrderUuid()); - } - - private boolean isDiscontinuationDrugOrder(EncounterTransaction.DrugOrder drugOrder) { - return drugOrder.getAction() != null && Order.Action.valueOf(drugOrder.getAction()) == Order.Action.DISCONTINUE; - } - - private DrugOrder createDrugOrder(EncounterTransaction.DrugOrder drugOrder) { - if (isNewDrugOrder(drugOrder)) { - return new DrugOrder(); - } else if (isDiscontinuationDrugOrder(drugOrder)) { - return (DrugOrder) orderService.getOrderByUuid(drugOrder.getPreviousOrderUuid()).cloneForDiscontinuing(); - } else { - return (DrugOrder) orderService.getOrderByUuid(drugOrder.getPreviousOrderUuid()).cloneForRevision(); - } - } - - private CareSetting getCareSettingFrom(EncounterTransaction.DrugOrder drugOrder, DrugOrder openMRSDrugOrder) { - if (!isNewDrugOrder(drugOrder)) { - return openMRSDrugOrder.getCareSetting(); - } - return orderService.getCareSettingByName(drugOrder.getCareSetting().toString()); - } - - private Drug getDrugFrom(EncounterTransaction.DrugOrder drugOrder, DrugOrder openMRSDrugOrder) { - if (!isNewDrugOrder(drugOrder)) { - return openMRSDrugOrder.getDrug(); - } - EncounterTransaction.Drug drug = drugOrder.getDrug(); - if (drug.getUuid() == null || drug.getUuid().isEmpty()) { - return conceptService.getDrug(drug.getName()); - } - return conceptService.getDrugByUuid(drug.getUuid()); - } -} \ No newline at end of file diff --git a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java b/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java deleted file mode 100644 index dba4b1536..000000000 --- a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java +++ /dev/null @@ -1,96 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.StringUtils; -import org.openmrs.*; -import org.openmrs.api.APIException; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -import java.util.Iterator; - -/** - * OpenMRSOrderMapper. - * Maps EncounterTransaction Order to OpenMRS Orders. - *

- * Version 1.0 - */ -public class OpenMRSOrderMapper { - private OrderService orderService; - private ConceptService conceptService; - - public OpenMRSOrderMapper(OrderService orderService, ConceptService conceptService) { - this.orderService = orderService; - this.conceptService = conceptService; - } - - public Order map(EncounterTransaction.Order order, Encounter encounter) { - - Order openMRSOrder = createOrder(order); - openMRSOrder.setCareSetting(orderService.getCareSettingByName(CareSettingType.OUTPATIENT.toString())); - - openMRSOrder.setEncounter(encounter); - openMRSOrder.setAutoExpireDate(order.getAutoExpireDate()); - openMRSOrder.setCommentToFulfiller(order.getCommentToFulfiller()); - openMRSOrder.setConcept(getConceptFrom(order, openMRSOrder)); - openMRSOrder.setOrderer(getProviderForOrders(encounter)); - - return openMRSOrder; - } - - private Order createOrder(EncounterTransaction.Order order) { - if (isNewOrder(order)) { - return new Order(); - } else if (isDiscontinuationOrder(order)) { - return orderService.getOrderByUuid(order.getPreviousOrderUuid()).cloneForDiscontinuing(); - } else { - return orderService.getOrderByUuid(order.getPreviousOrderUuid()).cloneForRevision(); - } - } - - private boolean isDiscontinuationOrder(EncounterTransaction.Order order) { - return order.getAction() != null && org.openmrs.Order.Action.valueOf(order.getAction()) == org.openmrs.Order.Action.DISCONTINUE; - } - - private Concept getConceptFrom(EncounterTransaction.Order order, Order openMRSOrder) { - if (!isNewOrder(order)) { - return openMRSOrder.getConcept(); - } - - EncounterTransaction.Concept concept = order.getConcept(); - Concept conceptByUuid = conceptService.getConceptByUuid(concept.getUuid()); - if (conceptByUuid == null) { - throw new APIException("No such Concept : " + order.getConcept().getName()); - } - return conceptByUuid; - } - - - private boolean isNewOrder(EncounterTransaction.Order order) { - return StringUtils.isBlank(order.getUuid()) && StringUtils.isBlank(order.getPreviousOrderUuid()); - } - - private Provider getProviderForOrders(Encounter encounter) { - Iterator providers = encounter.getEncounterProviders().iterator(); - - if (providers.hasNext()) { - return providers.next().getProvider(); - } - - throw new APIException("Encounter doesn't have a provider."); - } - - -} diff --git a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_10.java b/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_10.java deleted file mode 100644 index dd74a21ca..000000000 --- a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_10.java +++ /dev/null @@ -1,156 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.StringUtils; -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.api.db.hibernate.HibernateUtil; -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.ConceptMapper; -import org.openmrs.module.emrapi.encounter.OrderMapper; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.stereotype.Component; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.Comparator; -import java.util.List; - -@Component(value = "orderMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.10.*") -public class OrderMapper1_10 implements OrderMapper { - - private final ConceptMapper conceptMapper = new ConceptMapper(); - - @Override - public List mapDrugOrders(Encounter encounter) { - - List orders = new ArrayList(); - for (org.openmrs.Order order : encounter.getOrders()) { - order = HibernateUtil.getRealObjectFromProxy(order); - if (DrugOrder.class.equals(order.getClass())) { - orders.add(mapDrugOrder((DrugOrder) order)); - } - } - sortByOrderNumber(orders); - return orders; - } - - private void sortByOrderNumber(List orders) { - Collections.sort(orders, new Comparator() { - @Override - public int compare(EncounterTransaction.DrugOrder drugOrder1, EncounterTransaction.DrugOrder drugOrder2) { - return drugOrder1.getOrderNumber().compareTo(drugOrder2.getOrderNumber()); - } - }); - } - - @Override - public List mapOrders(Encounter encounter) { - List orders = new ArrayList(); - for (org.openmrs.Order order : encounter.getOrders()) { - order = HibernateUtil.getRealObjectFromProxy(order); - if (Order.class.equals(order.getClass())) { - orders.add(mapOrder(order)); - } - } - return orders; - } - - @Override - public EncounterTransaction.DrugOrder mapDrugOrder(DrugOrder openMRSDrugOrder) { - EncounterTransaction.DrugOrder drugOrder = new EncounterTransaction.DrugOrder(); - drugOrder.setUuid(openMRSDrugOrder.getUuid()); - if (openMRSDrugOrder.getCareSetting() != null) { - drugOrder.setCareSetting(CareSettingType.valueOf(openMRSDrugOrder.getCareSetting().getCareSettingType().toString())); - } - drugOrder.setAction(openMRSDrugOrder.getAction().name()); - drugOrder.setOrderType(openMRSDrugOrder.getOrderType().getName()); - - org.openmrs.Order previousOrder = openMRSDrugOrder.getPreviousOrder(); - if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())){ - drugOrder.setPreviousOrderUuid(previousOrder.getUuid()); - } - - EncounterTransaction.Drug encounterTransactionDrug = new DrugMapper1_10().map(openMRSDrugOrder.getDrug()); - drugOrder.setDrug(encounterTransactionDrug); - - drugOrder.setDosingInstructionType(openMRSDrugOrder.getDosingType().getName()); - drugOrder.setDuration(openMRSDrugOrder.getDuration()); - drugOrder.setDurationUnits(getConceptName(openMRSDrugOrder.getDurationUnits())); - - drugOrder.setScheduledDate(openMRSDrugOrder.getScheduledDate()); - drugOrder.setDateActivated(openMRSDrugOrder.getDateActivated()); - drugOrder.setEffectiveStartDate(openMRSDrugOrder.getEffectiveStartDate()); - drugOrder.setAutoExpireDate(openMRSDrugOrder.getAutoExpireDate()); - drugOrder.setEffectiveStopDate(openMRSDrugOrder.getEffectiveStopDate()); - - drugOrder.setDateStopped(openMRSDrugOrder.getDateStopped()); - - EncounterTransaction.DosingInstructions dosingInstructions = new EncounterTransaction.DosingInstructions(); - dosingInstructions.setDose(openMRSDrugOrder.getDose()); - dosingInstructions.setDoseUnits(getConceptName(openMRSDrugOrder.getDoseUnits())); - dosingInstructions.setRoute(getConceptName(openMRSDrugOrder.getRoute())); - dosingInstructions.setAsNeeded(openMRSDrugOrder.getAsNeeded()); - if(openMRSDrugOrder.getFrequency() != null) { - dosingInstructions.setFrequency(openMRSDrugOrder.getFrequency().getName()); - } - if (openMRSDrugOrder.getQuantity() != null) { - dosingInstructions.setQuantity(openMRSDrugOrder.getQuantity()); - } - dosingInstructions.setQuantityUnits(getConceptName(openMRSDrugOrder.getQuantityUnits())); - dosingInstructions.setAdministrationInstructions(openMRSDrugOrder.getDosingInstructions()); - drugOrder.setDosingInstructions(dosingInstructions); - - drugOrder.setInstructions(openMRSDrugOrder.getInstructions()); - drugOrder.setCommentToFulfiller(openMRSDrugOrder.getCommentToFulfiller()); - - drugOrder.setVoided(openMRSDrugOrder.getVoided()); - drugOrder.setVoidReason(openMRSDrugOrder.getVoidReason()); - drugOrder.setOrderNumber(openMRSDrugOrder.getOrderNumber()); - - return drugOrder; - } - - @Override - public EncounterTransaction.Order mapOrder(Order order) { - EncounterTransaction.Order emrOrder = new EncounterTransaction.Order(); - emrOrder.setUuid(order.getUuid()); - emrOrder.setConcept(conceptMapper.map(order.getConcept())); - emrOrder.setOrderType(order.getOrderType().getName()); - emrOrder.setInstructions(order.getInstructions()); - emrOrder.setDateCreated(order.getDateCreated()); - emrOrder.setDateChanged(order.getDateChanged()); - emrOrder.setDateStopped(order.getDateStopped()); - emrOrder.setOrderNumber(order.getOrderNumber()); - emrOrder.setCommentToFulfiller(order.getCommentToFulfiller()); - emrOrder.setAction(order.getAction().name()); - org.openmrs.Order previousOrder = order.getPreviousOrder(); - if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())){ - emrOrder.setPreviousOrderUuid(previousOrder.getUuid()); - } - return emrOrder; - } - - private String getConceptName(Concept concept) { - if (concept != null) { - return concept.getName().getName(); - } - return null; - } -} \ No newline at end of file diff --git a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java b/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java deleted file mode 100644 index d112f92fe..000000000 --- a/api-1.10/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java +++ /dev/null @@ -1,52 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.service; - -import org.openmrs.Concept; -import org.openmrs.OrderFrequency; -import org.openmrs.api.OrderService; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -import java.util.List; - -@Component -public class OrderMetadataService { - private OrderService orderService; - - @Autowired - public OrderMetadataService(OrderService orderService) { - this.orderService = orderService; - } - - public Concept getDurationUnitsConceptByName(String conceptName) { - List durationUnits = orderService.getDurationUnits(); - for (Concept durationUnit : durationUnits) { - if(durationUnit.getName().getName().equals(conceptName)){ - return durationUnit; - } - } - return null; - } - - public OrderFrequency getOrderFrequencyByName(String conceptName, boolean includeRetired) { - List orderFrequencies = orderService.getOrderFrequencies(includeRetired); - for (OrderFrequency orderFrequency : orderFrequencies) { - if(orderFrequency.getName().equals(conceptName)){ - return orderFrequency; - } - } - return null; - } -} diff --git a/api-1.10/src/main/resources/moduleApplicationContext.xml b/api-1.10/src/main/resources/moduleApplicationContext.xml deleted file mode 100644 index ae48555d0..000000000 --- a/api-1.10/src/main/resources/moduleApplicationContext.xml +++ /dev/null @@ -1,27 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - \ No newline at end of file diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_10Test.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_10Test.java deleted file mode 100644 index 1375d6222..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_10Test.java +++ /dev/null @@ -1,193 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.ArgumentCaptor; -import org.mockito.Mock; -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.api.EncounterService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.encounter.builder.DrugOrderBuilder; -import org.openmrs.module.emrapi.encounter.builder.OrderBuilder; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSDrugOrderMapper; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSOrderMapper; - -import java.text.ParseException; -import java.util.ArrayList; -import java.util.Arrays; - -import static org.hamcrest.Matchers.is; -import static org.hamcrest.Matchers.sameInstance; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; -import static org.mockito.Mockito.verify; -import static org.mockito.MockitoAnnotations.initMocks; -import static org.powermock.api.mockito.PowerMockito.when; - -public class EmrOrderServiceImpl_1_10Test { - - @Mock - private EncounterService encounterService; - - @Mock - private OpenMRSDrugOrderMapper openMRSDrugOrderMapper; - - @Mock - private OpenMRSOrderMapper openMRSOrderMapper; - - @Mock - private OrderService orderService; - - @Before - public void setup() { - initMocks(this); - } - - @Test - public void shouldSaveNewDrugOrdersInTheSequenceOfOrdering() throws ParseException { - EmrOrderServiceImpl_1_10 emrOrderService = new EmrOrderServiceImpl_1_10(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.DrugOrder drugOrder1 = new DrugOrderBuilder().withDrugUuid("drug-uuid1").build(); - EncounterTransaction.DrugOrder drugOrder2 = new DrugOrderBuilder().withDrugUuid("drug-uuid2").build(); - DrugOrder mappedDrugOrder1 = new DrugOrder(); - DrugOrder mappedDrugOrder2 = new DrugOrder(); - Encounter encounter = new Encounter(); - when(openMRSDrugOrderMapper.map(drugOrder1, encounter)).thenReturn(mappedDrugOrder1); - when(openMRSDrugOrderMapper.map(drugOrder2, encounter)).thenReturn(mappedDrugOrder2); - - emrOrderService.save(Arrays.asList(drugOrder1, drugOrder2), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(2)); - assertThat((DrugOrder)savedOrders.get(0), is(sameInstance(mappedDrugOrder1))); - assertThat((DrugOrder)savedOrders.get(1), is(sameInstance(mappedDrugOrder2))); - } - - @Test - public void shouldSaveNewDrugOrdersInTheSequenceOfOrderingToAnEncounterWithExistingOrders() throws ParseException { - EmrOrderServiceImpl_1_10 emrOrderService = new EmrOrderServiceImpl_1_10(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.DrugOrder drugOrder3 = new DrugOrderBuilder().withDrugUuid("drug-uuid3").build(); - EncounterTransaction.DrugOrder drugOrder4 = new DrugOrderBuilder().withDrugUuid("drug-uuid4").build(); - DrugOrder existingDrugOrder1 = new DrugOrder(); - DrugOrder existingDrugOrder2 = new DrugOrder(); - DrugOrder mappedDrugOrder3 = new DrugOrder(); - DrugOrder mappedDrugOrder4 = new DrugOrder(); - Encounter encounter = new Encounter(); - encounter.addOrder(existingDrugOrder1); - encounter.addOrder(existingDrugOrder2); - when(openMRSDrugOrderMapper.map(drugOrder3, encounter)).thenReturn(mappedDrugOrder3); - when(openMRSDrugOrderMapper.map(drugOrder4, encounter)).thenReturn(mappedDrugOrder4); - - emrOrderService.save(Arrays.asList(drugOrder3, drugOrder4), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(4)); - assertThat((DrugOrder)savedOrders.get(2), is(sameInstance(mappedDrugOrder3))); - assertThat((DrugOrder)savedOrders.get(3), is(sameInstance(mappedDrugOrder4))); - } - - @Test - public void shouldSaveOrders() throws ParseException { - EmrOrderServiceImpl_1_10 emrOrderService = new EmrOrderServiceImpl_1_10(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.Order order1 = new OrderBuilder().withConceptUuid("concept-uuid1").withComment("Comment").build(); - EncounterTransaction.Order order2 = new OrderBuilder().withConceptUuid("concept-uuid2").withComment("Comment").build(); - - Order mappedOrder1 = new Order(); - Concept concept = new Concept(); - concept.setUuid("concept-uuid1"); - mappedOrder1.setConcept(concept); - mappedOrder1.setCommentToFulfiller("Comment"); - - Order mappedOrder2 = new Order(); - concept = new Concept(); - concept.setUuid("concept-uuid2"); - mappedOrder2.setConcept(concept); - mappedOrder2.setCommentToFulfiller("Comment"); - - Encounter encounter = new Encounter(); - when(openMRSOrderMapper.map(order1,encounter)).thenReturn(mappedOrder1); - when(openMRSOrderMapper.map(order2,encounter)).thenReturn(mappedOrder2); - - emrOrderService.saveOrders(Arrays.asList(order1, order2), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(2)); - assertTrue(existsInOrdersList(mappedOrder1, savedOrders)); - assertTrue(existsInOrdersList(mappedOrder2, savedOrders)); - } - - @Test - public void shouldSaveOrdersToEncounterWithExistingOrders() throws ParseException { - EmrOrderServiceImpl_1_10 emrOrderService = new EmrOrderServiceImpl_1_10(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.Order order1 = new OrderBuilder().withConceptUuid("concept-uuid1").withComment("Comment").build(); - EncounterTransaction.Order order2 = new OrderBuilder().withConceptUuid("concept-uuid2").withComment("Comment").build(); - - Order mappedOrder1 = new Order(); - Concept concept = new Concept(); - concept.setUuid("concept-uuid1"); - mappedOrder1.setConcept(concept); - mappedOrder1.setCommentToFulfiller("Comment"); - - - Order mappedOrder2 = new Order(); - concept = new Concept(); - concept.setUuid("concept-uuid2"); - mappedOrder2.setConcept(concept); - mappedOrder2.setCommentToFulfiller("Comment"); - - - Order existingOrder1 = new Order(); - Order existingOrder2 = new Order(); - - Encounter encounter = new Encounter(); - encounter.addOrder(existingOrder1); - encounter.addOrder(existingOrder2); - - when(openMRSOrderMapper.map(order1,encounter)).thenReturn(mappedOrder1); - when(openMRSOrderMapper.map(order2,encounter)).thenReturn(mappedOrder2); - - emrOrderService.saveOrders(Arrays.asList(order1, order2), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(4)); - assertTrue(existsInOrdersList(mappedOrder1, savedOrders)); - assertTrue(existsInOrdersList(mappedOrder2, savedOrders)); - } - - private boolean existsInOrdersList(Order order, ArrayList orderArrayList) { - for(org.openmrs.Order orderItem : orderArrayList) { - if(orderItem.getConcept()!=null && orderItem.getConcept().getUuid().equals(order.getConcept().getUuid()) && - orderItem.getCommentToFulfiller().equals(order.getCommentToFulfiller())) - return true; - } - return false; - } -} \ No newline at end of file diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java deleted file mode 100644 index 7c72f3be8..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java +++ /dev/null @@ -1,87 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.builder; - -import java.util.Calendar; -import java.util.Date; -import java.util.UUID; - -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -public class DrugOrderBuilder { - - private final EncounterTransaction.DrugOrder drugOrder; - - public DrugOrderBuilder() { - drugOrder = new EncounterTransaction.DrugOrder(); - drugOrder.setCareSetting(CareSettingType.OUTPATIENT); - drugOrder.setOrderType("Drug Order"); - withDrugUuid(UUID.randomUUID().toString()); - drugOrder.setDosingInstructionType("org.openmrs.SimpleDosingInstructions"); - EncounterTransaction.DosingInstructions dosingInstructions = DosingInstructionsBuilder.sample(); - drugOrder.setDosingInstructions(dosingInstructions); - Calendar calendar = Calendar.getInstance(); - calendar.add(Calendar.MONTH, 1); - drugOrder.setScheduledDate(calendar.getTime()); - calendar.add(Calendar.MONTH, 1); - EncounterTransaction.Provider provider = new EncounterTransaction.Provider(); - provider.setUuid("331c6bf8-7846-11e3-a96a-0800271c1b75"); - drugOrder.setAction("NEW"); - drugOrder.setDuration(2); - drugOrder.setDurationUnits("Day"); - } - - public EncounterTransaction.DrugOrder build() { - return drugOrder; - } - - public DrugOrderBuilder withDurationUnits(String durationUnits) { - drugOrder.setDurationUnits(durationUnits); - return this; - } - - public DrugOrderBuilder withDrugUuid(String drugUuid) { - EncounterTransaction.Drug drug = new EncounterTransaction.Drug(); - drug.setUuid(drugUuid); - drugOrder.setDrug(drug); - return this; - } - - public DrugOrderBuilder withScheduledDate(Date scheduledDate) { - drugOrder.setScheduledDate(scheduledDate); - return this; - } - - public DrugOrderBuilder withFrequency(String frequency) { - drugOrder.getDosingInstructions().setFrequency(frequency); - return this; - } - - - public DrugOrderBuilder withAction(String action) { - drugOrder.setAction(action); - return this; - } - - public DrugOrderBuilder withPreviousOrderUuid(String previousOrderUuid) { - drugOrder.setPreviousOrderUuid(previousOrderUuid); - return this; - } - - public DrugOrderBuilder withAutoExpireDate(Date date) { - drugOrder.setAutoExpireDate(date); - return this; - } -} diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java deleted file mode 100644 index 95db4ffa6..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java +++ /dev/null @@ -1,71 +0,0 @@ -package org.openmrs.module.emrapi.encounter.builder; - -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -import java.util.Calendar; -import java.util.Date; -import java.util.UUID; - -public class OrderBuilder { - private final EncounterTransaction.Order order; - - public OrderBuilder() { - order = new EncounterTransaction.Order(); - order.setCareSetting(CareSettingType.OUTPATIENT); - withConceptUuid(UUID.randomUUID().toString()); - Calendar calendar = Calendar.getInstance(); - calendar.add(Calendar.MONTH, 1); - order.setDateCreated(calendar.getTime()); - calendar.add(Calendar.MONTH, 1); - EncounterTransaction.Provider provider = new EncounterTransaction.Provider(); - provider.setUuid("331c6bf8-7846-11e3-a96a-0800271c1b75"); - order.setAction("NEW"); - } - - public EncounterTransaction.Order build() { - return order; - } - - public OrderBuilder withConceptUuid(String conceptUuid) { - EncounterTransaction.Concept concept = new EncounterTransaction.Concept(); - concept.setUuid(conceptUuid); - order.setConcept(concept); - return this; - } - - public OrderBuilder withScheduledDate(Date createdDate) { - order.setDateCreated(createdDate); - return this; - } - - public OrderBuilder withComment(String comment) { - order.setCommentToFulfiller(comment); - return this; - } - - public OrderBuilder withAction(String action) { - order.setAction(action); - return this; - } - - public OrderBuilder withUuid(String orderUuid) { - order.setUuid(orderUuid); - return this; - } - - public OrderBuilder withConcept(EncounterTransaction.Concept concept) { - order.setConcept(concept); - return this; - } - - public OrderBuilder withPreviousOrderUuid(String previousOrderUuid) { - order.setPreviousOrderUuid(previousOrderUuid); - return this; - } - - public OrderBuilder withDateCreated(Date createdDate) { - order.setDateCreated(createdDate); - return this; - } -} diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java deleted file mode 100644 index b0b1650c5..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java +++ /dev/null @@ -1,86 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.Mock; -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.OrderFrequency; -import org.openmrs.api.ConceptService; -import org.openmrs.module.emrapi.encounter.builder.DosingInstructionsBuilder; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.is; -import static org.junit.Assert.assertThat; -import static org.mockito.MockitoAnnotations.initMocks; -import static org.openmrs.module.emrapi.encounter.domain.EncounterTransaction.DosingInstructions; -import static org.powermock.api.mockito.PowerMockito.when; - -public class DosingInstructionsMapperTest { - - @Mock - private OrderMetadataService orderMetadataService; - @Mock - private ConceptService conceptService; - - @Before - public void setup() { - initMocks(this); - } - - @Test - public void shouldMapDosingInstructionsToDrugOrder() { - DosingInstructions dosingInstructions = DosingInstructionsBuilder.sample(); - Concept capsuleConcept = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getDoseUnits())).thenReturn(capsuleConcept); - Concept routeConcept = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getRoute())).thenReturn(routeConcept); - Concept frequencyConcept = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getFrequency())).thenReturn(frequencyConcept); - OrderFrequency orderFrequency = new OrderFrequency(); - when(orderMetadataService.getOrderFrequencyByName("QDS", false)).thenReturn(orderFrequency); - Concept quantityUnits = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getQuantityUnits())).thenReturn(quantityUnits); - - DrugOrder drugOrder = new DrugOrder(); - DosingInstructionsMapper dosingInstructionsMapper = new DosingInstructionsMapper(conceptService, orderMetadataService); - - dosingInstructionsMapper.map(dosingInstructions, drugOrder); - - assertThat(drugOrder.getDosingInstructions(), is(equalTo("AC"))); - assertThat(drugOrder.getDose(), is(equalTo(2.0))); - assertThat(drugOrder.getDoseUnits(), is(capsuleConcept)); - assertThat(drugOrder.getRoute(), is(equalTo(routeConcept))); - assertThat(drugOrder.getFrequency(), is(equalTo(orderFrequency))); - assertThat(drugOrder.getAsNeeded(), is(equalTo(false))); - assertThat(drugOrder.getQuantity(), is(equalTo(Double.valueOf(dosingInstructions.getQuantity())))); - assertThat(drugOrder.getQuantityUnits(), is(equalTo(quantityUnits))); - assertThat(drugOrder.getNumRefills(), is(equalTo(dosingInstructions.getNumberOfRefills()))); - } - - @Test - public void shouldDefaultNumRefillsToZeroIfNotAvailable() { - DosingInstructions dosingInstructions = DosingInstructionsBuilder.sample(); - dosingInstructions.setNumberOfRefills(null); - DrugOrder drugOrder = new DrugOrder(); - - DosingInstructionsMapper dosingInstructionsMapper = new DosingInstructionsMapper(conceptService, orderMetadataService); - - dosingInstructionsMapper.map(dosingInstructions, drugOrder); - assertThat(drugOrder.getNumRefills(), is(equalTo(0))); - } -} diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DrugOrderMapper1_10Test.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DrugOrderMapper1_10Test.java deleted file mode 100644 index fac2cf223..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DrugOrderMapper1_10Test.java +++ /dev/null @@ -1,206 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang.StringUtils; -import org.joda.time.LocalDate; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.openmrs.CareSetting; -import org.openmrs.Concept; -import org.openmrs.ConceptMap; -import org.openmrs.ConceptMapType; -import org.openmrs.ConceptName; -import org.openmrs.ConceptReferenceTerm; -import org.openmrs.ConceptSource; -import org.openmrs.Drug; -import org.openmrs.DrugOrder; -import org.openmrs.Duration; -import org.openmrs.Order; -import org.openmrs.OrderFrequency; -import org.openmrs.OrderType; -import org.openmrs.Patient; -import org.openmrs.Encounter; -import org.openmrs.SimpleDosingInstructions; -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.util.LocaleUtility; -import org.powermock.core.classloader.annotations.PrepareForTest; -import org.powermock.modules.junit4.PowerMockRunner; - -import java.lang.reflect.Field; -import java.text.ParseException; -import java.util.Locale; -import java.util.List; -import java.util.HashSet; -import java.util.Arrays; - -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.is; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; -import static org.junit.Assert.assertEquals; -import static org.powermock.api.mockito.PowerMockito.mockStatic; - -@RunWith(PowerMockRunner.class) -@PrepareForTest(LocaleUtility.class) -public class DrugOrderMapper1_10Test { - - public static final CareSettingType OUT_PATIENT_CARE_SETTING = CareSettingType.OUTPATIENT; - public static final String DRUG_ORDER_TYPE = "Drug Order"; - public static final String DAY_DURATION_UNIT = "day"; - public static final String DRUG_UUID = "drug-uuid"; - public static final String CAPSULE_DOSE_UNIT = "Capsule"; - public static final String TABLET_DOSAGE_FORM = "TABLET"; - public static final String MOUTH_ROUTE = "mouth"; - public static final String TABLET_QUANTITY_UNIT = "TABLET"; - public static final String TWICE_A_DAY_FREQUENCY = "Twice a day"; - - private OrderMapper1_10 drugOrderMapper110; - - @Before - public void setup() { - mockStatic(LocaleUtility.class); - - drugOrderMapper110 = new OrderMapper1_10(); - } - - @Test - public void shouldMapNewDrugOrder() throws ParseException, NoSuchFieldException, IllegalAccessException { - - DrugOrder openMrsDrugOrder = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-100"); - EncounterTransaction.DrugOrder drugOrder = drugOrderMapper110.mapDrugOrder(openMrsDrugOrder); - - assertThat(drugOrder.getCareSetting(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(drugOrder.getAction(), is(equalTo(Order.Action.NEW.name()))); - assertThat(drugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertThat(drugOrder.getDosingInstructionType(), is(equalTo(SimpleDosingInstructions.class.getName()))); - assertThat(drugOrder.getDuration(), is(equalTo(5))); - assertThat(drugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_UNIT))); - - assertThat(drugOrder.getDateActivated(), is(equalTo(new LocalDate().toDate()))); - assertThat(drugOrder.getScheduledDate(), is(equalTo(new LocalDate().plusDays(3).toDate()))); - assertThat(drugOrder.getEffectiveStartDate(), is(equalTo(new LocalDate().plusDays(3).toDate()))); - assertThat(drugOrder.getAutoExpireDate(), is(equalTo(new LocalDate().plusDays(8).toDate()))); - assertThat(drugOrder.getEffectiveStopDate(), is(equalTo(new LocalDate().plusDays(8).toDate()))); - - assertThat(drugOrder.getDosingInstructions().getDose(), is(equalTo(2.0))); - assertThat(drugOrder.getDosingInstructions().getDoseUnits(), is(equalTo(CAPSULE_DOSE_UNIT))); - - assertThat(drugOrder.getDosingInstructions().getRoute(), is(equalTo(MOUTH_ROUTE))); - assertTrue(drugOrder.getDosingInstructions().getAsNeeded()); - - assertThat(drugOrder.getDosingInstructions().getFrequency(), is(equalTo(TWICE_A_DAY_FREQUENCY))); - - assertThat(drugOrder.getDosingInstructions().getQuantity(), is(equalTo(1.0))); - assertThat(drugOrder.getDosingInstructions().getQuantityUnits(), is(equalTo(TABLET_QUANTITY_UNIT))); - assertThat(drugOrder.getDosingInstructions().getAdministrationInstructions(), is(equalTo("3-0-2"))); - - assertThat(drugOrder.getInstructions(), is(equalTo("before meals"))); - assertThat(drugOrder.getCommentToFulfiller(), is(equalTo("boil in water"))); - assertThat(drugOrder.getOrderNumber(), is(equalTo("ORD-100"))); - } - - @Test - public void shouldSetPreviousOrder() throws NoSuchFieldException, IllegalAccessException { - DrugOrder openMrsDrugOrder = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", "previousOrderUuid", "ORD-100"); - EncounterTransaction.DrugOrder drugOrder = drugOrderMapper110.mapDrugOrder(openMrsDrugOrder); - - assertThat(drugOrder.getPreviousOrderUuid(), is(equalTo("previousOrderUuid"))); - } - - @Test - public void shouldReturnOrdersSortedByOrderNumber() throws NoSuchFieldException, IllegalAccessException { - DrugOrder drugOrder100 = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-100"); - DrugOrder drugOrder201 = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-201"); - DrugOrder drugOrder350 = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-350"); - - Encounter encounter = new Encounter(); - encounter.setOrders(new HashSet(Arrays.asList(drugOrder350, drugOrder100, drugOrder201))); - List sortedDrugOrders = drugOrderMapper110.mapDrugOrders(encounter); - - assertEquals("ORD-100", sortedDrugOrders.get(0).getOrderNumber()); - assertEquals("ORD-201", sortedDrugOrders.get(1).getOrderNumber()); - assertEquals("ORD-350", sortedDrugOrders.get(2).getOrderNumber()); - } - - private DrugOrder drugOrder(CareSetting.CareSettingType careSettingType, int daysToStartAfter, String dosingInstructions, - int duration, String instructions, String commentToFulfiller, String previousOrderUuid, String orderNumber) throws NoSuchFieldException, IllegalAccessException { - DrugOrder order = new DrugOrder(); - order.setPatient(new Patient()); - order.setCareSetting(new CareSetting(careSettingType.name(), null, CareSetting.CareSettingType.OUTPATIENT)); - order.setAction(Order.Action.NEW); - - Drug drug = new Drug(); - drug.setUuid(DRUG_UUID); - drug.setDosageForm(concept(TABLET_DOSAGE_FORM)); - order.setDrug(drug); - - OrderType orderType = new OrderType(); - orderType.setName(DRUG_ORDER_TYPE); - order.setOrderType(orderType); - - order.setDosingType(SimpleDosingInstructions.class); - - order.setDuration(duration); - Concept durationConcept = concept(DAY_DURATION_UNIT); - ConceptSource durationConceptSource = new ConceptSource(); - durationConceptSource.setUuid(Duration.SNOMED_CT_CONCEPT_SOURCE_HL7_CODE); - durationConcept.addConceptMapping(new ConceptMap(new ConceptReferenceTerm(durationConceptSource, "D", "Day"), new ConceptMapType())); - order.setDurationUnits(durationConcept); - - order.setDateActivated(new LocalDate().toDate()); - order.setUrgency(Order.Urgency.ON_SCHEDULED_DATE); - order.setScheduledDate(new LocalDate().plusDays(daysToStartAfter).toDate()); - order.setAutoExpireDate(new LocalDate().plusDays(daysToStartAfter + duration).toDate()); - - order.setDose(2.0); - order.setDoseUnits(concept(CAPSULE_DOSE_UNIT)); - order.setDosingInstructions(dosingInstructions); - - order.setRoute(concept(MOUTH_ROUTE)); - order.setAsNeeded(true); - - OrderFrequency orderFrequency = new OrderFrequency(); - orderFrequency.setFrequencyPerDay(2.0); - orderFrequency.setConcept(concept(TWICE_A_DAY_FREQUENCY)); - order.setFrequency(orderFrequency); - - order.setQuantity(1.0); - order.setQuantityUnits(concept(TABLET_QUANTITY_UNIT)); - - order.setInstructions(instructions); - order.setCommentToFulfiller(commentToFulfiller); - - Field field = Order.class.getDeclaredField("orderNumber"); - field.setAccessible(true); - field.set(order, orderNumber); - - if (StringUtils.isNotBlank(previousOrderUuid)) { - Order previousOrder = new Order(); - previousOrder.setUuid(previousOrderUuid); - order.setPreviousOrder(previousOrder); - } - - return order; - } - - private Concept concept(String name) { - Concept doseUnitsConcept = new Concept(); - doseUnitsConcept.setFullySpecifiedName(new ConceptName(name, Locale.ENGLISH)); - return doseUnitsConcept; - } - -} diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_10Test.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_10Test.java deleted file mode 100644 index 349fe729c..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_10Test.java +++ /dev/null @@ -1,235 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.time.DateUtils; -import org.junit.Before; -import org.junit.Rule; -import org.junit.Test; -import org.junit.rules.ExpectedException; -import org.mockito.Mock; -import org.mockito.invocation.InvocationOnMock; -import org.mockito.stubbing.Answer; -import org.openmrs.CareSetting; -import org.openmrs.Concept; -import org.openmrs.Drug; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.EncounterProvider; -import org.openmrs.Order; -import org.openmrs.OrderType; -import org.openmrs.SimpleDosingInstructions; -import org.openmrs.api.APIException; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.encounter.builder.DrugOrderBuilder; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -import java.text.ParseException; -import java.util.Date; -import java.util.HashSet; -import java.util.UUID; - -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.is; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; -import static org.mockito.Matchers.any; -import static org.mockito.Mockito.times; -import static org.mockito.Mockito.verify; -import static org.mockito.MockitoAnnotations.initMocks; -import static org.powermock.api.mockito.PowerMockito.when; - -public class OpenMRSDrugOrderMapper1_10Test { - - public static final String OUT_PATIENT_CARE_SETTING = "OUTPATIENT"; - public static final String DAY_DURATION_UNIT = "day"; - public static final String DRUG_UUID = "drug-uuid"; - private final Concept DAY_DURATION_CONCEPT = new Concept(); - - @Mock - private OrderService orderService; - - @Mock - private ConceptService conceptService; - - @Mock - private DosingInstructionsMapper dosingInstructionsMapper; - - @Mock - private OrderMetadataService orderMetadataService; - - @Rule - public ExpectedException expectedException = ExpectedException.none(); - - private OpenMRSDrugOrderMapper openMRSDrugOrderMapper; - private Encounter encounter; - - @Before - public void setup() { - initMocks(this); - - openMRSDrugOrderMapper = new OpenMRSDrugOrderMapper(orderService,conceptService, dosingInstructionsMapper, orderMetadataService); - - Drug drug = new Drug(); - drug.setUuid(DRUG_UUID); - when(conceptService.getDrugByUuid(DRUG_UUID)).thenReturn(drug); - - OrderType orderType = new OrderType("Drug Order", "", "org.openmrs.DrugOrder"); - when(orderService.getOrderTypeByConcept(any(Concept.class))).thenReturn(orderType); - - when(orderMetadataService.getDurationUnitsConceptByName(DAY_DURATION_UNIT)).thenReturn(DAY_DURATION_CONCEPT); - - CareSetting outPatientCareSetting = new CareSetting(OUT_PATIENT_CARE_SETTING, OUT_PATIENT_CARE_SETTING, CareSetting.CareSettingType.OUTPATIENT); - when(orderService.getCareSettingByName(OUT_PATIENT_CARE_SETTING)).thenReturn(outPatientCareSetting); - - when(dosingInstructionsMapper.map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class))).thenAnswer(argumentAt(1)); - - encounter = new Encounter(); - HashSet encounterProviders = new HashSet(); - EncounterProvider encounterProvider = new EncounterProvider(); - encounterProviders.add(encounterProvider); - encounter.setEncounterProviders(encounterProviders); - } - - - @Test - public void shouldMapNewDrugOrders() throws ParseException { - Date autoExpireDate = new Date(); - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder() - .withDrugUuid(DRUG_UUID) - .withDurationUnits(DAY_DURATION_UNIT) - .withAutoExpireDate(autoExpireDate) - .build(); - - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertThat(openMrsDrugOrder.getCareSetting().getName(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(openMrsDrugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertTrue(openMrsDrugOrder.getDosingType().isAssignableFrom(SimpleDosingInstructions.class)); - assertTrue(openMrsDrugOrder instanceof DrugOrder); - assertThat(openMrsDrugOrder.getAction(), is(equalTo(Order.Action.NEW))); - assertThat(openMrsDrugOrder.getEncounter(), is(equalTo(encounter))); - assertThat(openMrsDrugOrder.getDuration(), is(equalTo(drugOrder.getDuration()))); - assertThat(openMrsDrugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_CONCEPT))); - assertThat(openMrsDrugOrder.getAutoExpireDate(), is(equalTo(autoExpireDate))); - verify(dosingInstructionsMapper).map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class)); - } - - @Test - public void shouldMapRevisedDrugOrders() throws ParseException { - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - drugOrder.setAction(Order.Action.REVISE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertThat(revisedOpenMrsDrugOrder.getPreviousOrder().getUuid(), is(equalTo(openMrsDrugOrder.getUuid()))); - assertThat(revisedOpenMrsDrugOrder.getCareSetting().getName(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(revisedOpenMrsDrugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertTrue(revisedOpenMrsDrugOrder.getDosingType().isAssignableFrom(SimpleDosingInstructions.class)); - assertTrue(openMrsDrugOrder instanceof DrugOrder); - assertThat(revisedOpenMrsDrugOrder.getAction(), is(equalTo(Order.Action.REVISE))); - assertThat(revisedOpenMrsDrugOrder.getEncounter(), is(equalTo(encounter))); - assertThat(revisedOpenMrsDrugOrder.getDuration(), is(equalTo(drugOrder.getDuration()))); - assertThat(revisedOpenMrsDrugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_CONCEPT))); - verify(dosingInstructionsMapper, times(2)).map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class)); - } - - @Test - public void shouldClearScheduledDateAndUrgencyWhenScheduledOrderRevisedToStartFromToday(){ - DrugOrder previousOpenMrsDrugOrder = new DrugOrder(); - previousOpenMrsDrugOrder.setScheduledDate(DateUtils.addDays(new Date(), 2)); - previousOpenMrsDrugOrder.setUrgency(Order.Urgency.ON_SCHEDULED_DATE); - previousOpenMrsDrugOrder.setUuid(UUID.randomUUID().toString()); - Drug drug = new Drug(); - drug.setUuid(DRUG_UUID); - previousOpenMrsDrugOrder.setDrug(drug); - when(orderService.getOrderByUuid(previousOpenMrsDrugOrder.getUuid())).thenReturn(previousOpenMrsDrugOrder); - EncounterTransaction.DrugOrder revisedDrugOrder = new DrugOrderBuilder().withScheduledDate(null).withAction(Order.Action.REVISE.name()).withPreviousOrderUuid(previousOpenMrsDrugOrder.getUuid()).withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(revisedDrugOrder, encounter); - - assertThat(revisedOpenMrsDrugOrder.getUrgency(), is(equalTo(OpenMRSDrugOrderMapper.DEFAULT_URGENCY))); - assertNull(revisedOpenMrsDrugOrder.getScheduledDate()); - } - - @Test - public void shouldMapStoppedDrugOrders() throws ParseException { - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - drugOrder.setAction(Order.Action.DISCONTINUE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertThat(revisedOpenMrsDrugOrder.getPreviousOrder().getUuid(), is(equalTo(openMrsDrugOrder.getUuid()))); - assertThat(revisedOpenMrsDrugOrder.getCareSetting().getName(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(revisedOpenMrsDrugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertTrue(revisedOpenMrsDrugOrder.getDosingType().isAssignableFrom(SimpleDosingInstructions.class)); - assertTrue(openMrsDrugOrder instanceof DrugOrder); - assertThat(revisedOpenMrsDrugOrder.getAction(), is(equalTo(Order.Action.DISCONTINUE))); - assertThat(revisedOpenMrsDrugOrder.getEncounter(), is(equalTo(encounter))); - assertThat(revisedOpenMrsDrugOrder.getDuration(), is(equalTo(drugOrder.getDuration()))); - assertThat(revisedOpenMrsDrugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_CONCEPT))); - verify(dosingInstructionsMapper, times(2)).map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class)); - } - - @Test - public void shouldNotReviseDrugOrderWithRetiredDrug(){ - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - openMrsDrugOrder.getDrug().setRetired(true); - drugOrder.setAction(Order.Action.REVISE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - drugOrder.getDrug().setName("Paracetamol"); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - - expectedException.expect(APIException.class); - expectedException.expectMessage("Drug has been retired : Paracetamol"); - - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - } - - @Test - public void shouldDiscontinueDrugOrderWithRetiredDrug(){ - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - openMrsDrugOrder.getDrug().setRetired(true); - drugOrder.setAction(Order.Action.DISCONTINUE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - drugOrder.getDrug().setName("Paracetamol"); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - - DrugOrder discontinuedDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertNotNull(discontinuedDrugOrder); - } - - private Answer argumentAt(final int arg) { - return new Answer() { - @Override - public DrugOrder answer(InvocationOnMock invocationOnMock) throws Throwable { - return (DrugOrder) invocationOnMock.getArguments()[arg]; - } - }; - } - -} diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper1_10Test.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper1_10Test.java deleted file mode 100644 index a8064e16f..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper1_10Test.java +++ /dev/null @@ -1,141 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.junit.Assert; -import org.junit.Before; -import org.junit.Test; -import org.mockito.Answers; -import org.mockito.Mock; -import org.mockito.MockitoAnnotations; -import org.openmrs.*; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.encounter.builder.OrderBuilder; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -import java.util.Date; -import java.util.HashSet; -import java.util.Set; - -import static org.mockito.Mockito.mock; -import static org.mockito.Mockito.verify; -import static org.mockito.Mockito.when; - - -public class OpenMRSOrderMapper1_10Test { - - @Mock - private OrderService orderService; - - @Mock - private ConceptService conceptService; - - @Mock(answer = Answers.RETURNS_DEEP_STUBS) - private Encounter encounter; - - - @Before - public void setUp() throws Exception { - MockitoAnnotations.initMocks(this); - } - - - @Test - public void createNewOrderFromEtOrder() throws Exception { - Provider provider = mock(Provider.class); - handleEncounterProvider(provider); - - Concept mrsBloodConcept = mock(Concept.class); - when(conceptService.getConceptByUuid("bloodConceptUuid")).thenReturn(mrsBloodConcept); - - Date currentDate = new Date(); - - EncounterTransaction.Concept blood = new EncounterTransaction.Concept("bloodConceptUuid", "blood"); - - EncounterTransaction.Order etOrder = new EncounterTransaction.Order(); - etOrder.setConcept(blood); - etOrder.setDateCreated(currentDate); - - OpenMRSOrderMapper orderMapper = new OpenMRSOrderMapper(orderService, conceptService); - - Order order = orderMapper.map(etOrder, encounter); - - Assert.assertEquals(encounter, order.getEncounter()); - Assert.assertEquals(mrsBloodConcept, order.getConcept()); - Assert.assertEquals(provider, order.getOrderer()); - } - - @Test - public void discontinueOrder() throws Exception { - Provider provider = mock(Provider.class); - handleEncounterProvider(provider); - - Order mrsOrder = new Order(); - when(orderService.getOrderByUuid("previous order uuid")).thenReturn(mrsOrder); - - Date createdDate = new Date(); - EncounterTransaction.Concept blood = new EncounterTransaction.Concept("bloodConceptUuid", "blood"); - - EncounterTransaction.Order etOrder = new OrderBuilder().withAction(org.openmrs.Order.Action.DISCONTINUE.toString()). - withUuid("orderUuid").withConcept(blood).withPreviousOrderUuid("previous order uuid").withDateCreated(createdDate).build(); - - OpenMRSOrderMapper orderMapper = new OpenMRSOrderMapper(orderService, conceptService); - Order order = orderMapper.map(etOrder, encounter); - - Assert.assertEquals(org.openmrs.Order.Action.DISCONTINUE, order.getAction()); - } - - @Test - public void createRevisedOrderFromEtOrder() { - Provider provider = mock(Provider.class); - handleEncounterProvider(provider); - - Order originalOrder = new Order(); - when(orderService.getOrderByUuid("previousOrderUuid")).thenReturn(originalOrder); - - - Date currentDate = new Date(); - - - EncounterTransaction.Order etOrder = new EncounterTransaction.Order(); - etOrder.setUuid(null); - etOrder.setPreviousOrderUuid("previousOrderUuid"); - etOrder.setAutoExpireDate(currentDate); - etOrder.setCommentToFulfiller("Comment"); - - OpenMRSOrderMapper orderMapper = new OpenMRSOrderMapper(orderService,conceptService); - - Order order = orderMapper.map(etOrder, encounter); - - verify(orderService).getOrderByUuid("previousOrderUuid"); - Assert.assertEquals(encounter, order.getEncounter()); - Assert.assertEquals("Comment", order.getCommentToFulfiller()); - Assert.assertEquals(currentDate, order.getAutoExpireDate()); - Assert.assertEquals(provider, order.getOrderer()); - } - - private void handleEncounterProvider(Provider provider){ - EncounterProvider encounterProvider = mock(EncounterProvider.class); - when(encounterProvider.getProvider()).thenReturn(provider); - - Set providerSet = new HashSet(); - providerSet.add(encounterProvider); - - when(encounter.getEncounterProviders()).thenReturn(providerSet); - } - - - - } \ No newline at end of file diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java b/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java deleted file mode 100644 index f956fe93f..000000000 --- a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java +++ /dev/null @@ -1,113 +0,0 @@ -/* - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.service; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.Mock; -import org.openmrs.Concept; -import org.openmrs.ConceptName; -import org.openmrs.OrderFrequency; -import org.openmrs.api.OrderService; -import org.openmrs.api.context.Context; -import org.openmrs.test.BaseModuleContextSensitiveTest; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Locale; - -import static org.hamcrest.core.Is.is; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertThat; -import static org.mockito.Mockito.when; - -public class OrderMetadataServiceTest extends BaseModuleContextSensitiveTest { - - public static final String DAYS_CONCEPT_NAME = "Days"; - public static final String WEEKS_CONCEPT_NAME = "Weeks"; - public static final String ONCE_A_DAY_CONCEPT_NAME = "Once A Day"; - public static final String TWICE_A_DAY_CONCEPT_NAME = "Twice A Day"; - - @Mock - private OrderService orderService; - - private OrderMetadataService orderMetadataService; - - @Before - public void setUp() throws Exception { - OrderService orderService = Context.getOrderService(); - orderMetadataService = new OrderMetadataService(orderService); - } - - @Test - public void shouldGetDurationConceptByName() throws Exception { - Concept days = createConcept(DAYS_CONCEPT_NAME); - Concept weeks = createConcept(WEEKS_CONCEPT_NAME); - when(orderService.getDurationUnits()).thenReturn(Arrays.asList(days, weeks)); - - Concept durationUnitsConcept = orderMetadataService.getDurationUnitsConceptByName(DAYS_CONCEPT_NAME); - - assertThat(durationUnitsConcept, is(days)); - } - - @Test - public void shouldReturnNullIfDurationConceptDoesNotExist() throws Exception { - when(orderService.getDurationUnits()).thenReturn(new ArrayList()); - - Concept durationUnitsConcept = orderMetadataService.getDurationUnitsConceptByName(DAYS_CONCEPT_NAME); - - assertNull(durationUnitsConcept); - } - - @Test - public void shouldReturnNullDurationUnitsForNullInput() { - assertNull(orderMetadataService.getDurationUnitsConceptByName(null)); - } - - @Test - public void shouldGetOrderFrequencyByName() throws Exception { - OrderFrequency onceADayOrderFrequency = new OrderFrequency(); - onceADayOrderFrequency.setConcept(createConcept(ONCE_A_DAY_CONCEPT_NAME)); - - OrderFrequency twiceADayOrderFrequency = new OrderFrequency(); - twiceADayOrderFrequency.setConcept(createConcept(TWICE_A_DAY_CONCEPT_NAME)); - - when(orderService.getOrderFrequencies(false)).thenReturn(Arrays.asList(onceADayOrderFrequency, twiceADayOrderFrequency)); - - OrderFrequency orderFrequency = orderMetadataService.getOrderFrequencyByName(ONCE_A_DAY_CONCEPT_NAME, false); - - assertThat(orderFrequency, is(onceADayOrderFrequency)); - } - - @Test - public void shouldReturnNullIfOrderFrequencyNotPresent() throws Exception { - when(orderService.getOrderFrequencies(false)).thenReturn(new ArrayList()); - - OrderFrequency orderFrequency = orderMetadataService.getOrderFrequencyByName(ONCE_A_DAY_CONCEPT_NAME, false); - - assertNull(orderFrequency); - } - - @Test - public void shouldReturnNullOrderFrequencyForNullInput() { - assertNull(orderMetadataService.getOrderFrequencyByName(null, false)); - } - - - private Concept createConcept(String conceptName) { - Concept concept = new Concept(); - concept.setPreferredName(new ConceptName(conceptName, Locale.getDefault())); - return concept; - } -} \ No newline at end of file diff --git a/api-1.11/pom.xml b/api-1.11/pom.xml deleted file mode 100644 index 5de366513..000000000 --- a/api-1.11/pom.xml +++ /dev/null @@ -1,99 +0,0 @@ - - 4.0.0 - - - org.openmrs.module - emrapi - 1.37.0-SNAPSHOT - - - emrapi-api-1.11 - jar - EMR API Module API 1.11 - API project for EMRAPI - - - 1.11.3 - - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - provided - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - provided - - - javassist - javassist - - - - - - org.openmrs.api - openmrs-api - test-jar - ${openMRSVersion} - test - - - javassist - javassist - - - - - - org.openmrs.test - openmrs-test - ${openMRSVersion} - pom - test - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-pre2.2 - ${project.parent.version} - provided - - - - - - - - src/main/resources - true - - - - - - src/test/resources - - **/*.properties - **/*.xml - - true - - - src/test/resources - - **/*.properties - **/*.xml - - false - - - - - diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_11.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_11.java deleted file mode 100644 index bd0202b24..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_11.java +++ /dev/null @@ -1,63 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter; - -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.api.EncounterService; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSDrugOrderMapper; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSOrderMapper; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Service; - -import java.util.LinkedHashSet; -import java.util.List; - -@Service(value = "emrOrderService") -@OpenmrsProfile(openmrsPlatformVersion = "1.11.*") -public class EmrOrderServiceImpl_1_11 implements EmrOrderService { - private final OpenMRSDrugOrderMapper openMRSDrugOrderMapper; - private final EncounterService encounterService; - private final OpenMRSOrderMapper openMRSOrderMapper; - - @Autowired - public EmrOrderServiceImpl_1_11(OpenMRSDrugOrderMapper openMRSDrugOrderMapper, EncounterService encounterService, OpenMRSOrderMapper openMRSOrderMapper) { - this.openMRSDrugOrderMapper = openMRSDrugOrderMapper; - this.encounterService = encounterService; - this.openMRSOrderMapper = openMRSOrderMapper; - } - - @Override - public void save(List drugOrders, Encounter encounter) { - //TODO: setOrders method can be removed. - encounter.setOrders(new LinkedHashSet(encounter.getOrders())); - for (EncounterTransaction.DrugOrder drugOrder : drugOrders) { - DrugOrder omrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - encounter.addOrder(omrsDrugOrder); - } - encounterService.saveEncounter(encounter); - } - - @Override - public void saveOrders(List orders, Encounter encounter) { - for (EncounterTransaction.Order order : orders) { - Order omrsOrder = openMRSOrderMapper.map(order, encounter); - encounter.addOrder(omrsOrder); - } - encounterService.saveEncounter(encounter); - } -} diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java deleted file mode 100644 index aaf5eaef6..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java +++ /dev/null @@ -1,48 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.api.ConceptService; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -public class DosingInstructionsMapper { - private ConceptService conceptService; - private OrderMetadataService orderMetadataService; - - public DosingInstructionsMapper(ConceptService conceptService, OrderMetadataService orderMetadataService) { - this.conceptService = conceptService; - this.orderMetadataService = orderMetadataService; - } - - public DrugOrder map(EncounterTransaction.DosingInstructions dosingInstructions, DrugOrder drugOrder) { - drugOrder.setDose(dosingInstructions.getDose()); - drugOrder.setDoseUnits(conceptByName(dosingInstructions.getDoseUnits())); - drugOrder.setDosingInstructions(dosingInstructions.getAdministrationInstructions()); - drugOrder.setRoute(conceptByName(dosingInstructions.getRoute())); - drugOrder.setAsNeeded(dosingInstructions.getAsNeeded()); - drugOrder.setFrequency(orderMetadataService.getOrderFrequencyByName(dosingInstructions.getFrequency(), false)); - drugOrder.setQuantity(Double.valueOf(dosingInstructions.getQuantity())); - drugOrder.setQuantityUnits(conceptByName(dosingInstructions.getQuantityUnits())); - Integer numberOfRefills = dosingInstructions.getNumberOfRefills(); - drugOrder.setNumRefills(numberOfRefills == null? 0: numberOfRefills); - return drugOrder; - } - - private Concept conceptByName(String name) { - return conceptService.getConceptByName(name); - } -} diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_11.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_11.java deleted file mode 100644 index 5940eb2b4..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_11.java +++ /dev/null @@ -1,38 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - - -import org.openmrs.Drug; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.encounter.DrugMapper; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.stereotype.Component; - -@Component(value = "drugMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.11.*") -public class DrugMapper1_11 implements DrugMapper { - - public EncounterTransaction.Drug map(Drug drug){ - EncounterTransaction.Drug encounterTransactionDrug = new EncounterTransaction.Drug(); - encounterTransactionDrug.setName(drug.getDisplayName()); - if (drug.getDosageForm() != null) { - encounterTransactionDrug.setForm(drug.getDosageForm().getName().getName()); - } - encounterTransactionDrug.setStrength(drug.getStrength()); - encounterTransactionDrug.setUuid(drug.getUuid()); - return encounterTransactionDrug; - } - -} diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper1_11.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper1_11.java deleted file mode 100644 index 2e32d7ef3..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper1_11.java +++ /dev/null @@ -1,31 +0,0 @@ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.openmrs.Encounter; -import org.openmrs.Obs; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.api.ConceptService; -import org.openmrs.api.ObsService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.EmrApiProperties; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -@Component(value = "obsMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.11.*") -public class ObsMapper1_11 extends ObsMapper { - - @Autowired - public ObsMapper1_11(ConceptService conceptService, - EmrApiProperties emrApiProperties, - ObsService obsService, OrderService orderService) { - super(conceptService,emrApiProperties,obsService,orderService); - } - - @Override - protected Obs newObservation(Encounter encounter,EncounterTransaction.Observation observationData) { - Obs obs = super.newObservation(encounter,observationData); - obs.setFormField(observationData.getFormNamespace(),observationData.getFormFieldPath()); - return obs; - } -} diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java deleted file mode 100644 index be9e43b5c..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java +++ /dev/null @@ -1,132 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.StringUtils; -import org.openmrs.CareSetting; -import org.openmrs.DosingInstructions; -import org.openmrs.Drug; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.Provider; -import org.openmrs.Concept; -import org.openmrs.api.APIException; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.api.context.Context; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -/** - * OpenMRSDrugOrderMapper. - * Maps EncounterTransaction DrugOrder to OpenMRS DrugOrders. - *

- * Version 1.0 - */ -public class OpenMRSDrugOrderMapper { - - private OrderService orderService; - private ConceptService conceptService; - private DosingInstructionsMapper dosingInstructionsMapper; - private OrderMetadataService orderMetadataService; - public static final Order.Urgency DEFAULT_URGENCY = Order.Urgency.ROUTINE; - - public OpenMRSDrugOrderMapper(OrderService orderService, ConceptService conceptService, - DosingInstructionsMapper dosingInstructionsMapper, OrderMetadataService orderMetadataService) { - this.orderService = orderService; - this.conceptService = conceptService; - this.dosingInstructionsMapper = dosingInstructionsMapper; - this.orderMetadataService = orderMetadataService; - } - - public DrugOrder map(EncounterTransaction.DrugOrder drugOrder, Encounter encounter) { - Concept conceptByUuid; - DrugOrder openMRSDrugOrder = createDrugOrder(drugOrder); - openMRSDrugOrder.setCareSetting(getCareSettingFrom(drugOrder, openMRSDrugOrder)); - - Drug drug = getDrugFrom(drugOrder, openMRSDrugOrder); - - if (drug == null) { - throw new APIException("No such drug : " + drugOrder.getDrug().getName()); - } - if(drug.isRetired() && !isDiscontinuationDrugOrder(drugOrder)){ - throw new APIException("Drug has been retired : " + drugOrder.getDrug().getName()); - } - openMRSDrugOrder.setDrug(drug); - openMRSDrugOrder.setEncounter(encounter); - - openMRSDrugOrder.setDateActivated(drugOrder.getDateActivated()); - openMRSDrugOrder.setScheduledDate(drugOrder.getScheduledDate()); - openMRSDrugOrder.setUrgency(drugOrder.getScheduledDate() != null ? Order.Urgency.ON_SCHEDULED_DATE : DEFAULT_URGENCY); - openMRSDrugOrder.setDuration(drugOrder.getDuration()); - openMRSDrugOrder.setDurationUnits(orderMetadataService.getDurationUnitsConceptByName(drugOrder.getDurationUnits())); - openMRSDrugOrder.setAutoExpireDate(drugOrder.getAutoExpireDate()); - if(drugOrder.getOrderReasonConcept() != null) { - conceptByUuid = conceptService.getConceptByUuid(drugOrder.getOrderReasonConcept().getUuid()); - openMRSDrugOrder.setOrderReason(conceptByUuid); - } - openMRSDrugOrder.setOrderReasonNonCoded(drugOrder.getOrderReasonText()); - - try { - if (drugOrder.getDosingInstructionType() != null) { - openMRSDrugOrder.setDosingType((Class) Context.loadClass(drugOrder.getDosingInstructionType())); - } - } catch (ClassNotFoundException e) { - throw new APIException("Class not found for : DosingInstructionType " + drugOrder.getDosingInstructionType(), e); - } - - dosingInstructionsMapper.map(drugOrder.getDosingInstructions(), openMRSDrugOrder); - openMRSDrugOrder.setInstructions(drugOrder.getInstructions()); - Provider provider = encounter.getEncounterProviders().iterator().next().getProvider(); - openMRSDrugOrder.setOrderer(provider); - return openMRSDrugOrder; - } - - private boolean isNewDrugOrder(EncounterTransaction.DrugOrder drugOrder) { - return StringUtils.isBlank(drugOrder.getPreviousOrderUuid()); - } - - private boolean isDiscontinuationDrugOrder(EncounterTransaction.DrugOrder drugOrder) { - return drugOrder.getAction() != null && Order.Action.valueOf(drugOrder.getAction()) == Order.Action.DISCONTINUE; - } - - private DrugOrder createDrugOrder(EncounterTransaction.DrugOrder drugOrder) { - if (isNewDrugOrder(drugOrder)) { - return new DrugOrder(); - } else if (isDiscontinuationDrugOrder(drugOrder)) { - return (DrugOrder) orderService.getOrderByUuid(drugOrder.getPreviousOrderUuid()).cloneForDiscontinuing(); - } else { - return (DrugOrder) orderService.getOrderByUuid(drugOrder.getPreviousOrderUuid()).cloneForRevision(); - } - } - - private CareSetting getCareSettingFrom(EncounterTransaction.DrugOrder drugOrder, DrugOrder openMRSDrugOrder) { - if (!isNewDrugOrder(drugOrder)) { - return openMRSDrugOrder.getCareSetting(); - } - return orderService.getCareSettingByName(drugOrder.getCareSetting().toString()); - } - - private Drug getDrugFrom(EncounterTransaction.DrugOrder drugOrder, DrugOrder openMRSDrugOrder) { - if (!isNewDrugOrder(drugOrder)) { - return openMRSDrugOrder.getDrug(); - } - EncounterTransaction.Drug drug = drugOrder.getDrug(); - if (drug.getUuid() == null || drug.getUuid().isEmpty()) { - return conceptService.getDrug(drug.getName()); - } - return conceptService.getDrugByUuid(drug.getUuid()); - } -} \ No newline at end of file diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java deleted file mode 100644 index dba4b1536..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java +++ /dev/null @@ -1,96 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.StringUtils; -import org.openmrs.*; -import org.openmrs.api.APIException; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -import java.util.Iterator; - -/** - * OpenMRSOrderMapper. - * Maps EncounterTransaction Order to OpenMRS Orders. - *

- * Version 1.0 - */ -public class OpenMRSOrderMapper { - private OrderService orderService; - private ConceptService conceptService; - - public OpenMRSOrderMapper(OrderService orderService, ConceptService conceptService) { - this.orderService = orderService; - this.conceptService = conceptService; - } - - public Order map(EncounterTransaction.Order order, Encounter encounter) { - - Order openMRSOrder = createOrder(order); - openMRSOrder.setCareSetting(orderService.getCareSettingByName(CareSettingType.OUTPATIENT.toString())); - - openMRSOrder.setEncounter(encounter); - openMRSOrder.setAutoExpireDate(order.getAutoExpireDate()); - openMRSOrder.setCommentToFulfiller(order.getCommentToFulfiller()); - openMRSOrder.setConcept(getConceptFrom(order, openMRSOrder)); - openMRSOrder.setOrderer(getProviderForOrders(encounter)); - - return openMRSOrder; - } - - private Order createOrder(EncounterTransaction.Order order) { - if (isNewOrder(order)) { - return new Order(); - } else if (isDiscontinuationOrder(order)) { - return orderService.getOrderByUuid(order.getPreviousOrderUuid()).cloneForDiscontinuing(); - } else { - return orderService.getOrderByUuid(order.getPreviousOrderUuid()).cloneForRevision(); - } - } - - private boolean isDiscontinuationOrder(EncounterTransaction.Order order) { - return order.getAction() != null && org.openmrs.Order.Action.valueOf(order.getAction()) == org.openmrs.Order.Action.DISCONTINUE; - } - - private Concept getConceptFrom(EncounterTransaction.Order order, Order openMRSOrder) { - if (!isNewOrder(order)) { - return openMRSOrder.getConcept(); - } - - EncounterTransaction.Concept concept = order.getConcept(); - Concept conceptByUuid = conceptService.getConceptByUuid(concept.getUuid()); - if (conceptByUuid == null) { - throw new APIException("No such Concept : " + order.getConcept().getName()); - } - return conceptByUuid; - } - - - private boolean isNewOrder(EncounterTransaction.Order order) { - return StringUtils.isBlank(order.getUuid()) && StringUtils.isBlank(order.getPreviousOrderUuid()); - } - - private Provider getProviderForOrders(Encounter encounter) { - Iterator providers = encounter.getEncounterProviders().iterator(); - - if (providers.hasNext()) { - return providers.next().getProvider(); - } - - throw new APIException("Encounter doesn't have a provider."); - } - - -} diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_11.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_11.java deleted file mode 100644 index adb845659..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_11.java +++ /dev/null @@ -1,158 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.StringUtils; -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.api.db.hibernate.HibernateUtil; -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.ConceptMapper; -import org.openmrs.module.emrapi.encounter.OrderMapper; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.stereotype.Component; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.Comparator; -import java.util.List; - -@Component(value = "orderMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.11.*") -public class OrderMapper1_11 implements OrderMapper { - - private final ConceptMapper conceptMapper = new ConceptMapper(); - - @Override - public List mapDrugOrders(Encounter encounter) { - - List orders = new ArrayList(); - for (org.openmrs.Order order : encounter.getOrders()) { - order = HibernateUtil.getRealObjectFromProxy(order); - if (DrugOrder.class.equals(order.getClass())) { - orders.add(mapDrugOrder((DrugOrder) order)); - } - } - sortByOrderNumber(orders); - return orders; - } - - private void sortByOrderNumber(List orders) { - Collections.sort(orders, new Comparator() { - @Override - public int compare(EncounterTransaction.DrugOrder drugOrder1, EncounterTransaction.DrugOrder drugOrder2) { - return drugOrder1.getOrderNumber().compareTo(drugOrder2.getOrderNumber()); - } - }); - } - - @Override - public List mapOrders(Encounter encounter) { - List orders = new ArrayList(); - for (org.openmrs.Order order : encounter.getOrders()) { - order = HibernateUtil.getRealObjectFromProxy(order); - if (Order.class.equals(order.getClass())) { - orders.add(mapOrder(order)); - } - } - return orders; - } - - @Override - public EncounterTransaction.DrugOrder mapDrugOrder(DrugOrder openMRSDrugOrder) { - EncounterTransaction.DrugOrder drugOrder = new EncounterTransaction.DrugOrder(); - drugOrder.setUuid(openMRSDrugOrder.getUuid()); - if (openMRSDrugOrder.getCareSetting() != null) { - drugOrder.setCareSetting(CareSettingType.valueOf(openMRSDrugOrder.getCareSetting().getCareSettingType().toString())); - } - drugOrder.setAction(openMRSDrugOrder.getAction().name()); - drugOrder.setOrderType(openMRSDrugOrder.getOrderType().getName()); - - org.openmrs.Order previousOrder = openMRSDrugOrder.getPreviousOrder(); - if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())){ - drugOrder.setPreviousOrderUuid(previousOrder.getUuid()); - } - - EncounterTransaction.Drug encounterTransactionDrug = new DrugMapper1_11().map(openMRSDrugOrder.getDrug()); - drugOrder.setDrug(encounterTransactionDrug); - - drugOrder.setDosingInstructionType(openMRSDrugOrder.getDosingType().getName()); - drugOrder.setDuration(openMRSDrugOrder.getDuration()); - drugOrder.setDurationUnits(getConceptName(openMRSDrugOrder.getDurationUnits())); - - drugOrder.setScheduledDate(openMRSDrugOrder.getScheduledDate()); - drugOrder.setDateActivated(openMRSDrugOrder.getDateActivated()); - drugOrder.setEffectiveStartDate(openMRSDrugOrder.getEffectiveStartDate()); - drugOrder.setAutoExpireDate(openMRSDrugOrder.getAutoExpireDate()); - drugOrder.setEffectiveStopDate(openMRSDrugOrder.getEffectiveStopDate()); - - drugOrder.setDateStopped(openMRSDrugOrder.getDateStopped()); - - EncounterTransaction.DosingInstructions dosingInstructions = new EncounterTransaction.DosingInstructions(); - dosingInstructions.setDose(openMRSDrugOrder.getDose()); - dosingInstructions.setDoseUnits(getConceptName(openMRSDrugOrder.getDoseUnits())); - dosingInstructions.setRoute(getConceptName(openMRSDrugOrder.getRoute())); - dosingInstructions.setAsNeeded(openMRSDrugOrder.getAsNeeded()); - if(openMRSDrugOrder.getFrequency() != null) { - dosingInstructions.setFrequency(openMRSDrugOrder.getFrequency().getName()); - } - if (openMRSDrugOrder.getQuantity() != null) { - dosingInstructions.setQuantity(openMRSDrugOrder.getQuantity()); - } - dosingInstructions.setQuantityUnits(getConceptName(openMRSDrugOrder.getQuantityUnits())); - dosingInstructions.setAdministrationInstructions(openMRSDrugOrder.getDosingInstructions()); - drugOrder.setDosingInstructions(dosingInstructions); - - drugOrder.setInstructions(openMRSDrugOrder.getInstructions()); - drugOrder.setCommentToFulfiller(openMRSDrugOrder.getCommentToFulfiller()); - - drugOrder.setVoided(openMRSDrugOrder.getVoided()); - drugOrder.setVoidReason(openMRSDrugOrder.getVoidReason()); - drugOrder.setOrderNumber(openMRSDrugOrder.getOrderNumber()); - drugOrder.setOrderReasonConcept(conceptMapper.map(openMRSDrugOrder.getOrderReason())); - drugOrder.setOrderReasonText(openMRSDrugOrder.getOrderReasonNonCoded()); - - return drugOrder; - } - - @Override - public EncounterTransaction.Order mapOrder(Order order) { - EncounterTransaction.Order emrOrder = new EncounterTransaction.Order(); - emrOrder.setUuid(order.getUuid()); - emrOrder.setConcept(conceptMapper.map(order.getConcept())); - emrOrder.setOrderType(order.getOrderType().getName()); - emrOrder.setInstructions(order.getInstructions()); - emrOrder.setDateCreated(order.getDateCreated()); - emrOrder.setDateChanged(order.getDateChanged()); - emrOrder.setDateStopped(order.getDateStopped()); - emrOrder.setOrderNumber(order.getOrderNumber()); - emrOrder.setCommentToFulfiller(order.getCommentToFulfiller()); - emrOrder.setAction(order.getAction().name()); - org.openmrs.Order previousOrder = order.getPreviousOrder(); - if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())){ - emrOrder.setPreviousOrderUuid(previousOrder.getUuid()); - } - return emrOrder; - } - - private String getConceptName(Concept concept) { - if (concept != null) { - return concept.getName().getName(); - } - return null; - } -} \ No newline at end of file diff --git a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java b/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java deleted file mode 100644 index d112f92fe..000000000 --- a/api-1.11/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java +++ /dev/null @@ -1,52 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.service; - -import org.openmrs.Concept; -import org.openmrs.OrderFrequency; -import org.openmrs.api.OrderService; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -import java.util.List; - -@Component -public class OrderMetadataService { - private OrderService orderService; - - @Autowired - public OrderMetadataService(OrderService orderService) { - this.orderService = orderService; - } - - public Concept getDurationUnitsConceptByName(String conceptName) { - List durationUnits = orderService.getDurationUnits(); - for (Concept durationUnit : durationUnits) { - if(durationUnit.getName().getName().equals(conceptName)){ - return durationUnit; - } - } - return null; - } - - public OrderFrequency getOrderFrequencyByName(String conceptName, boolean includeRetired) { - List orderFrequencies = orderService.getOrderFrequencies(includeRetired); - for (OrderFrequency orderFrequency : orderFrequencies) { - if(orderFrequency.getName().equals(conceptName)){ - return orderFrequency; - } - } - return null; - } -} diff --git a/api-1.11/src/main/resources/moduleApplicationContext.xml b/api-1.11/src/main/resources/moduleApplicationContext.xml deleted file mode 100644 index ae48555d0..000000000 --- a/api-1.11/src/main/resources/moduleApplicationContext.xml +++ /dev/null @@ -1,27 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - \ No newline at end of file diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_11Test.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_11Test.java deleted file mode 100644 index 692008eee..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_11Test.java +++ /dev/null @@ -1,193 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.ArgumentCaptor; -import org.mockito.Mock; -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.api.EncounterService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.encounter.builder.DrugOrderBuilder; -import org.openmrs.module.emrapi.encounter.builder.OrderBuilder; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSDrugOrderMapper; -import org.openmrs.module.emrapi.encounter.mapper.OpenMRSOrderMapper; - -import java.text.ParseException; -import java.util.ArrayList; -import java.util.Arrays; - -import static org.hamcrest.Matchers.is; -import static org.hamcrest.Matchers.sameInstance; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; -import static org.mockito.Mockito.verify; -import static org.mockito.MockitoAnnotations.initMocks; -import static org.powermock.api.mockito.PowerMockito.when; - -public class EmrOrderServiceImpl_1_11Test { - - @Mock - private EncounterService encounterService; - - @Mock - private OpenMRSDrugOrderMapper openMRSDrugOrderMapper; - - @Mock - private OpenMRSOrderMapper openMRSOrderMapper; - - @Mock - private OrderService orderService; - - @Before - public void setup() { - initMocks(this); - } - - @Test - public void shouldSaveNewDrugOrdersInTheSequenceOfOrdering() throws ParseException { - EmrOrderServiceImpl_1_11 emrOrderService = new EmrOrderServiceImpl_1_11(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.DrugOrder drugOrder1 = new DrugOrderBuilder().withDrugUuid("drug-uuid1").build(); - EncounterTransaction.DrugOrder drugOrder2 = new DrugOrderBuilder().withDrugUuid("drug-uuid2").build(); - DrugOrder mappedDrugOrder1 = new DrugOrder(); - DrugOrder mappedDrugOrder2 = new DrugOrder(); - Encounter encounter = new Encounter(); - when(openMRSDrugOrderMapper.map(drugOrder1, encounter)).thenReturn(mappedDrugOrder1); - when(openMRSDrugOrderMapper.map(drugOrder2, encounter)).thenReturn(mappedDrugOrder2); - - emrOrderService.save(Arrays.asList(drugOrder1, drugOrder2), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(2)); - assertThat((DrugOrder)savedOrders.get(0), is(sameInstance(mappedDrugOrder1))); - assertThat((DrugOrder)savedOrders.get(1), is(sameInstance(mappedDrugOrder2))); - } - - @Test - public void shouldSaveNewDrugOrdersInTheSequenceOfOrderingToAnEncounterWithExistingOrders() throws ParseException { - EmrOrderServiceImpl_1_11 emrOrderService = new EmrOrderServiceImpl_1_11(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.DrugOrder drugOrder3 = new DrugOrderBuilder().withDrugUuid("drug-uuid3").build(); - EncounterTransaction.DrugOrder drugOrder4 = new DrugOrderBuilder().withDrugUuid("drug-uuid4").build(); - DrugOrder existingDrugOrder1 = new DrugOrder(); - DrugOrder existingDrugOrder2 = new DrugOrder(); - DrugOrder mappedDrugOrder3 = new DrugOrder(); - DrugOrder mappedDrugOrder4 = new DrugOrder(); - Encounter encounter = new Encounter(); - encounter.addOrder(existingDrugOrder1); - encounter.addOrder(existingDrugOrder2); - when(openMRSDrugOrderMapper.map(drugOrder3, encounter)).thenReturn(mappedDrugOrder3); - when(openMRSDrugOrderMapper.map(drugOrder4, encounter)).thenReturn(mappedDrugOrder4); - - emrOrderService.save(Arrays.asList(drugOrder3, drugOrder4), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(4)); - assertThat((DrugOrder)savedOrders.get(2), is(sameInstance(mappedDrugOrder3))); - assertThat((DrugOrder)savedOrders.get(3), is(sameInstance(mappedDrugOrder4))); - } - - @Test - public void shouldSaveOrders() throws ParseException { - EmrOrderServiceImpl_1_11 emrOrderService = new EmrOrderServiceImpl_1_11(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.Order order1 = new OrderBuilder().withConceptUuid("concept-uuid1").withComment("Comment").build(); - EncounterTransaction.Order order2 = new OrderBuilder().withConceptUuid("concept-uuid2").withComment("Comment").build(); - - Order mappedOrder1 = new Order(); - Concept concept = new Concept(); - concept.setUuid("concept-uuid1"); - mappedOrder1.setConcept(concept); - mappedOrder1.setCommentToFulfiller("Comment"); - - Order mappedOrder2 = new Order(); - concept = new Concept(); - concept.setUuid("concept-uuid2"); - mappedOrder2.setConcept(concept); - mappedOrder2.setCommentToFulfiller("Comment"); - - Encounter encounter = new Encounter(); - when(openMRSOrderMapper.map(order1,encounter)).thenReturn(mappedOrder1); - when(openMRSOrderMapper.map(order2,encounter)).thenReturn(mappedOrder2); - - emrOrderService.saveOrders(Arrays.asList(order1, order2), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(2)); - assertTrue(existsInOrdersList(mappedOrder1, savedOrders)); - assertTrue(existsInOrdersList(mappedOrder2, savedOrders)); - } - - @Test - public void shouldSaveOrdersToEncounterWithExistingOrders() throws ParseException { - EmrOrderServiceImpl_1_11 emrOrderService = new EmrOrderServiceImpl_1_11(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper); - EncounterTransaction.Order order1 = new OrderBuilder().withConceptUuid("concept-uuid1").withComment("Comment").build(); - EncounterTransaction.Order order2 = new OrderBuilder().withConceptUuid("concept-uuid2").withComment("Comment").build(); - - Order mappedOrder1 = new Order(); - Concept concept = new Concept(); - concept.setUuid("concept-uuid1"); - mappedOrder1.setConcept(concept); - mappedOrder1.setCommentToFulfiller("Comment"); - - - Order mappedOrder2 = new Order(); - concept = new Concept(); - concept.setUuid("concept-uuid2"); - mappedOrder2.setConcept(concept); - mappedOrder2.setCommentToFulfiller("Comment"); - - - Order existingOrder1 = new Order(); - Order existingOrder2 = new Order(); - - Encounter encounter = new Encounter(); - encounter.addOrder(existingOrder1); - encounter.addOrder(existingOrder2); - - when(openMRSOrderMapper.map(order1,encounter)).thenReturn(mappedOrder1); - when(openMRSOrderMapper.map(order2,encounter)).thenReturn(mappedOrder2); - - emrOrderService.saveOrders(Arrays.asList(order1, order2), encounter); - - ArgumentCaptor encounterArgumentCaptor = ArgumentCaptor.forClass(Encounter.class); - verify(encounterService).saveEncounter(encounterArgumentCaptor.capture()); - Encounter savedEncounter = encounterArgumentCaptor.getValue(); - ArrayList savedOrders = new ArrayList(savedEncounter.getOrders()); - assertThat(savedOrders.size(), is(4)); - assertTrue(existsInOrdersList(mappedOrder1, savedOrders)); - assertTrue(existsInOrdersList(mappedOrder2, savedOrders)); - } - - private boolean existsInOrdersList(Order order, ArrayList orderArrayList) { - for(org.openmrs.Order orderItem : orderArrayList) { - if(orderItem.getConcept()!=null && orderItem.getConcept().getUuid().equals(order.getConcept().getUuid()) && - orderItem.getCommentToFulfiller().equals(order.getCommentToFulfiller())) - return true; - } - return false; - } -} \ No newline at end of file diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelper1_11Test.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelper1_11Test.java deleted file mode 100644 index c7ea36a63..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelper1_11Test.java +++ /dev/null @@ -1,99 +0,0 @@ -package org.openmrs.module.emrapi.encounter; - - -import org.junit.Test; -import org.mockito.Mock; - -import org.openmrs.*; -import org.openmrs.api.ConceptService; -import org.openmrs.api.ObsService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.EmrApiProperties; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.mapper.ObsMapper1_11; -import org.openmrs.module.emrapi.test.builder.ConceptDataTypeBuilder; - -import java.text.ParseException; -import java.text.SimpleDateFormat; -import java.util.Date; -import java.util.List; - -import static java.util.Arrays.asList; -import static org.junit.Assert.assertEquals; -import static org.mockito.Mockito.when; -import static org.mockito.MockitoAnnotations.initMocks; - -public class EncounterObservationServiceHelper1_11Test { - - - public static final String TEXT_CONCEPT_UUID = "text-concept-uuid"; - - @Mock - private ConceptService conceptService; - - @Mock - private ObsService obsService; - @Mock - private DiagnosisMetadata diagnosisMetadata; - @Mock - private EmrApiProperties emrApiProperties; - - @Mock - private OrderService orderService; - - @Mock - private Encounter encounter; - - - @Mock - private EncounterTransaction.Observation observation, rootObservation; - - private ObsMapper1_11 obsMapper1_11 = null; - - - @Test - public void shouldCreateNewObservationWithNamespace() throws ParseException { - initMocks(this); - obsMapper1_11 = new ObsMapper1_11(conceptService,emrApiProperties,obsService,orderService); - EncounterObservationServiceHelper encounterObservationServiceHelper = new EncounterObservationServiceHelper(conceptService, emrApiProperties, obsService, orderService,obsMapper1_11); - - newConcept(new ConceptDataTypeBuilder().text(), TEXT_CONCEPT_UUID); - List observations = asList( - new EncounterTransaction.Observation() - .setConcept(getConcept(TEXT_CONCEPT_UUID)) - .setValue("text value") - .setComment("overweight") - .setFormNamespace("formNamespace") - .setFormFieldPath("formFieldPath") - ); - - Date encounterDateTime = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss.SSSZ").parse("2005-01-01T00:00:00.000+0000"); - Patient patient = new Patient(); - - Encounter encounter = new Encounter(); - encounter.setUuid("e-uuid"); - encounter.setPatient(patient); - encounter.setEncounterDatetime(encounterDateTime); - - encounterObservationServiceHelper.update(encounter, observations); - - assertEquals(1, encounter.getObs().size()); - Obs textObservation = encounter.getObs().iterator().next(); - assertEquals("formNamespace",textObservation.getFormFieldNamespace()); - assertEquals("formFieldPath",textObservation.getFormFieldPath()); - } - - private Concept newConcept(ConceptDatatype conceptDatatype, String conceptUuid) { - Concept concept = new Concept(); - concept.setDatatype(conceptDatatype); - concept.setUuid(conceptUuid); - when(conceptService.getConceptByUuid(conceptUuid)).thenReturn(concept); - return concept; - } - - private EncounterTransaction.Concept getConcept(String conceptUuid) { - return new EncounterTransaction.Concept(conceptUuid, "concept_name"); - } - -} \ No newline at end of file diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java deleted file mode 100644 index f9663ac76..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java +++ /dev/null @@ -1,33 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.builder; - -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -public class DosingInstructionsBuilder { - - public static EncounterTransaction.DosingInstructions sample() { - EncounterTransaction.DosingInstructions dosingInstructions = new EncounterTransaction.DosingInstructions(); - dosingInstructions.setDose(2.0); - dosingInstructions.setDoseUnits("Capsule"); - dosingInstructions.setRoute("PO"); - dosingInstructions.setFrequency("QDS"); - dosingInstructions.setAsNeeded(false); - dosingInstructions.setAdministrationInstructions("AC"); - dosingInstructions.setQuantity(1.0); - dosingInstructions.setQuantityUnits("bottle"); - dosingInstructions.setNumberOfRefills(1); - return dosingInstructions; - } -} diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java deleted file mode 100644 index 7c72f3be8..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java +++ /dev/null @@ -1,87 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.builder; - -import java.util.Calendar; -import java.util.Date; -import java.util.UUID; - -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -public class DrugOrderBuilder { - - private final EncounterTransaction.DrugOrder drugOrder; - - public DrugOrderBuilder() { - drugOrder = new EncounterTransaction.DrugOrder(); - drugOrder.setCareSetting(CareSettingType.OUTPATIENT); - drugOrder.setOrderType("Drug Order"); - withDrugUuid(UUID.randomUUID().toString()); - drugOrder.setDosingInstructionType("org.openmrs.SimpleDosingInstructions"); - EncounterTransaction.DosingInstructions dosingInstructions = DosingInstructionsBuilder.sample(); - drugOrder.setDosingInstructions(dosingInstructions); - Calendar calendar = Calendar.getInstance(); - calendar.add(Calendar.MONTH, 1); - drugOrder.setScheduledDate(calendar.getTime()); - calendar.add(Calendar.MONTH, 1); - EncounterTransaction.Provider provider = new EncounterTransaction.Provider(); - provider.setUuid("331c6bf8-7846-11e3-a96a-0800271c1b75"); - drugOrder.setAction("NEW"); - drugOrder.setDuration(2); - drugOrder.setDurationUnits("Day"); - } - - public EncounterTransaction.DrugOrder build() { - return drugOrder; - } - - public DrugOrderBuilder withDurationUnits(String durationUnits) { - drugOrder.setDurationUnits(durationUnits); - return this; - } - - public DrugOrderBuilder withDrugUuid(String drugUuid) { - EncounterTransaction.Drug drug = new EncounterTransaction.Drug(); - drug.setUuid(drugUuid); - drugOrder.setDrug(drug); - return this; - } - - public DrugOrderBuilder withScheduledDate(Date scheduledDate) { - drugOrder.setScheduledDate(scheduledDate); - return this; - } - - public DrugOrderBuilder withFrequency(String frequency) { - drugOrder.getDosingInstructions().setFrequency(frequency); - return this; - } - - - public DrugOrderBuilder withAction(String action) { - drugOrder.setAction(action); - return this; - } - - public DrugOrderBuilder withPreviousOrderUuid(String previousOrderUuid) { - drugOrder.setPreviousOrderUuid(previousOrderUuid); - return this; - } - - public DrugOrderBuilder withAutoExpireDate(Date date) { - drugOrder.setAutoExpireDate(date); - return this; - } -} diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java deleted file mode 100644 index 95db4ffa6..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java +++ /dev/null @@ -1,71 +0,0 @@ -package org.openmrs.module.emrapi.encounter.builder; - -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -import java.util.Calendar; -import java.util.Date; -import java.util.UUID; - -public class OrderBuilder { - private final EncounterTransaction.Order order; - - public OrderBuilder() { - order = new EncounterTransaction.Order(); - order.setCareSetting(CareSettingType.OUTPATIENT); - withConceptUuid(UUID.randomUUID().toString()); - Calendar calendar = Calendar.getInstance(); - calendar.add(Calendar.MONTH, 1); - order.setDateCreated(calendar.getTime()); - calendar.add(Calendar.MONTH, 1); - EncounterTransaction.Provider provider = new EncounterTransaction.Provider(); - provider.setUuid("331c6bf8-7846-11e3-a96a-0800271c1b75"); - order.setAction("NEW"); - } - - public EncounterTransaction.Order build() { - return order; - } - - public OrderBuilder withConceptUuid(String conceptUuid) { - EncounterTransaction.Concept concept = new EncounterTransaction.Concept(); - concept.setUuid(conceptUuid); - order.setConcept(concept); - return this; - } - - public OrderBuilder withScheduledDate(Date createdDate) { - order.setDateCreated(createdDate); - return this; - } - - public OrderBuilder withComment(String comment) { - order.setCommentToFulfiller(comment); - return this; - } - - public OrderBuilder withAction(String action) { - order.setAction(action); - return this; - } - - public OrderBuilder withUuid(String orderUuid) { - order.setUuid(orderUuid); - return this; - } - - public OrderBuilder withConcept(EncounterTransaction.Concept concept) { - order.setConcept(concept); - return this; - } - - public OrderBuilder withPreviousOrderUuid(String previousOrderUuid) { - order.setPreviousOrderUuid(previousOrderUuid); - return this; - } - - public OrderBuilder withDateCreated(Date createdDate) { - order.setDateCreated(createdDate); - return this; - } -} diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java deleted file mode 100644 index b0b1650c5..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java +++ /dev/null @@ -1,86 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.Mock; -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.OrderFrequency; -import org.openmrs.api.ConceptService; -import org.openmrs.module.emrapi.encounter.builder.DosingInstructionsBuilder; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.is; -import static org.junit.Assert.assertThat; -import static org.mockito.MockitoAnnotations.initMocks; -import static org.openmrs.module.emrapi.encounter.domain.EncounterTransaction.DosingInstructions; -import static org.powermock.api.mockito.PowerMockito.when; - -public class DosingInstructionsMapperTest { - - @Mock - private OrderMetadataService orderMetadataService; - @Mock - private ConceptService conceptService; - - @Before - public void setup() { - initMocks(this); - } - - @Test - public void shouldMapDosingInstructionsToDrugOrder() { - DosingInstructions dosingInstructions = DosingInstructionsBuilder.sample(); - Concept capsuleConcept = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getDoseUnits())).thenReturn(capsuleConcept); - Concept routeConcept = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getRoute())).thenReturn(routeConcept); - Concept frequencyConcept = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getFrequency())).thenReturn(frequencyConcept); - OrderFrequency orderFrequency = new OrderFrequency(); - when(orderMetadataService.getOrderFrequencyByName("QDS", false)).thenReturn(orderFrequency); - Concept quantityUnits = new Concept(); - when(conceptService.getConceptByName(dosingInstructions.getQuantityUnits())).thenReturn(quantityUnits); - - DrugOrder drugOrder = new DrugOrder(); - DosingInstructionsMapper dosingInstructionsMapper = new DosingInstructionsMapper(conceptService, orderMetadataService); - - dosingInstructionsMapper.map(dosingInstructions, drugOrder); - - assertThat(drugOrder.getDosingInstructions(), is(equalTo("AC"))); - assertThat(drugOrder.getDose(), is(equalTo(2.0))); - assertThat(drugOrder.getDoseUnits(), is(capsuleConcept)); - assertThat(drugOrder.getRoute(), is(equalTo(routeConcept))); - assertThat(drugOrder.getFrequency(), is(equalTo(orderFrequency))); - assertThat(drugOrder.getAsNeeded(), is(equalTo(false))); - assertThat(drugOrder.getQuantity(), is(equalTo(Double.valueOf(dosingInstructions.getQuantity())))); - assertThat(drugOrder.getQuantityUnits(), is(equalTo(quantityUnits))); - assertThat(drugOrder.getNumRefills(), is(equalTo(dosingInstructions.getNumberOfRefills()))); - } - - @Test - public void shouldDefaultNumRefillsToZeroIfNotAvailable() { - DosingInstructions dosingInstructions = DosingInstructionsBuilder.sample(); - dosingInstructions.setNumberOfRefills(null); - DrugOrder drugOrder = new DrugOrder(); - - DosingInstructionsMapper dosingInstructionsMapper = new DosingInstructionsMapper(conceptService, orderMetadataService); - - dosingInstructionsMapper.map(dosingInstructions, drugOrder); - assertThat(drugOrder.getNumRefills(), is(equalTo(0))); - } -} diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DrugOrderMapper1_11Test.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DrugOrderMapper1_11Test.java deleted file mode 100644 index 251583fe8..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DrugOrderMapper1_11Test.java +++ /dev/null @@ -1,221 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang.StringUtils; -import org.joda.time.LocalDate; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.openmrs.CareSetting; -import org.openmrs.Concept; -import org.openmrs.ConceptMap; -import org.openmrs.ConceptMapType; -import org.openmrs.ConceptName; -import org.openmrs.ConceptReferenceTerm; -import org.openmrs.ConceptSource; -import org.openmrs.Drug; -import org.openmrs.DrugOrder; -import org.openmrs.Duration; -import org.openmrs.Order; -import org.openmrs.OrderFrequency; -import org.openmrs.OrderType; -import org.openmrs.Patient; -import org.openmrs.Encounter; -import org.openmrs.SimpleDosingInstructions; -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.util.LocaleUtility; -import org.openmrs.ConceptDatatype; -import org.powermock.core.classloader.annotations.PrepareForTest; -import org.powermock.modules.junit4.PowerMockRunner; -import org.openmrs.api.context.Context; - -import java.lang.reflect.Field; -import java.text.ParseException; -import java.util.Locale; -import java.util.List; -import java.util.HashSet; -import java.util.Arrays; - -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.is; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; -import static org.junit.Assert.assertEquals; -import static org.powermock.api.mockito.PowerMockito.mockStatic; - -@RunWith(PowerMockRunner.class) -@PrepareForTest({LocaleUtility.class,Context.class}) -public class DrugOrderMapper1_11Test { - - public static final CareSettingType OUT_PATIENT_CARE_SETTING = CareSettingType.OUTPATIENT; - public static final String DRUG_ORDER_TYPE = "Drug Order"; - public static final String DAY_DURATION_UNIT = "day"; - public static final String DRUG_UUID = "drug-uuid"; - public static final String CAPSULE_DOSE_UNIT = "Capsule"; - public static final String TABLET_DOSAGE_FORM = "TABLET"; - public static final String MOUTH_ROUTE = "mouth"; - public static final String TABLET_QUANTITY_UNIT = "TABLET"; - public static final String TWICE_A_DAY_FREQUENCY = "Twice a day"; - public static final String HAS_SIDE_EFFECTS= "Has side effects"; - private final String ORDER_REASON_NON_CODED = "has multiple side effects"; - - private OrderMapper1_11 drugOrderMapper111; - - @Before - public void setup() { - mockStatic(LocaleUtility.class); - mockStatic(Context.class); - drugOrderMapper111 = new OrderMapper1_11(); - } - - @Test - public void shouldMapNewDrugOrder() throws ParseException, NoSuchFieldException, IllegalAccessException { - - DrugOrder openMrsDrugOrder = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-100"); - EncounterTransaction.DrugOrder drugOrder = drugOrderMapper111.mapDrugOrder(openMrsDrugOrder); - - assertThat(drugOrder.getCareSetting(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(drugOrder.getAction(), is(equalTo(Order.Action.NEW.name()))); - assertThat(drugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertThat(drugOrder.getDosingInstructionType(), is(equalTo(SimpleDosingInstructions.class.getName()))); - assertThat(drugOrder.getDuration(), is(equalTo(5))); - assertThat(drugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_UNIT))); - - assertThat(drugOrder.getDateActivated(), is(equalTo(new LocalDate().toDate()))); - assertThat(drugOrder.getScheduledDate(), is(equalTo(new LocalDate().plusDays(3).toDate()))); - assertThat(drugOrder.getEffectiveStartDate(), is(equalTo(new LocalDate().plusDays(3).toDate()))); - assertThat(drugOrder.getAutoExpireDate(), is(equalTo(new LocalDate().plusDays(8).toDate()))); - assertThat(drugOrder.getEffectiveStopDate(), is(equalTo(new LocalDate().plusDays(8).toDate()))); - - assertThat(drugOrder.getDosingInstructions().getDose(), is(equalTo(2.0))); - assertThat(drugOrder.getDosingInstructions().getDoseUnits(), is(equalTo(CAPSULE_DOSE_UNIT))); - - assertThat(drugOrder.getDosingInstructions().getRoute(), is(equalTo(MOUTH_ROUTE))); - assertTrue(drugOrder.getDosingInstructions().getAsNeeded()); - - assertThat(drugOrder.getDosingInstructions().getFrequency(), is(equalTo(TWICE_A_DAY_FREQUENCY))); - - assertThat(drugOrder.getDosingInstructions().getQuantity(), is(equalTo(1.0))); - assertThat(drugOrder.getDosingInstructions().getQuantityUnits(), is(equalTo(TABLET_QUANTITY_UNIT))); - assertThat(drugOrder.getDosingInstructions().getAdministrationInstructions(), is(equalTo("3-0-2"))); - - assertThat(drugOrder.getInstructions(), is(equalTo("before meals"))); - assertThat(drugOrder.getCommentToFulfiller(), is(equalTo("boil in water"))); - assertThat(drugOrder.getOrderNumber(), is(equalTo("ORD-100"))); - - assertThat(drugOrder.getOrderReasonConcept().getName(), is(HAS_SIDE_EFFECTS)); - assertThat(drugOrder.getOrderReasonText(),is(equalTo(ORDER_REASON_NON_CODED))); - } - - @Test - public void shouldSetPreviousOrder() throws NoSuchFieldException, IllegalAccessException { - DrugOrder openMrsDrugOrder = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", "previousOrderUuid", "ORD-100"); - EncounterTransaction.DrugOrder drugOrder = drugOrderMapper111.mapDrugOrder(openMrsDrugOrder); - - assertThat(drugOrder.getPreviousOrderUuid(), is(equalTo("previousOrderUuid"))); - } - - @Test - public void shouldReturnOrdersSortedByOrderNumber() throws NoSuchFieldException, IllegalAccessException { - DrugOrder drugOrder100 = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-100"); - DrugOrder drugOrder201 = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-201"); - DrugOrder drugOrder350 = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-350"); - - Encounter encounter = new Encounter(); - encounter.setOrders(new HashSet(Arrays.asList(drugOrder350, drugOrder100, drugOrder201))); - List sortedDrugOrders = drugOrderMapper111.mapDrugOrders(encounter); - - assertEquals("ORD-100", sortedDrugOrders.get(0).getOrderNumber()); - assertEquals("ORD-201", sortedDrugOrders.get(1).getOrderNumber()); - assertEquals("ORD-350", sortedDrugOrders.get(2).getOrderNumber()); - } - - private DrugOrder drugOrder(CareSetting.CareSettingType careSettingType, int daysToStartAfter, String dosingInstructions, - int duration, String instructions, String commentToFulfiller, String previousOrderUuid, String orderNumber) throws NoSuchFieldException, IllegalAccessException { - DrugOrder order = new DrugOrder(); - order.setPatient(new Patient()); - order.setCareSetting(new CareSetting(careSettingType.name(), null, CareSetting.CareSettingType.OUTPATIENT)); - order.setAction(Order.Action.NEW); - - Drug drug = new Drug(); - drug.setUuid(DRUG_UUID); - drug.setDosageForm(concept(TABLET_DOSAGE_FORM)); - order.setDrug(drug); - - OrderType orderType = new OrderType(); - orderType.setName(DRUG_ORDER_TYPE); - order.setOrderType(orderType); - - order.setDosingType(SimpleDosingInstructions.class); - - order.setDuration(duration); - Concept durationConcept = concept(DAY_DURATION_UNIT); - ConceptSource durationConceptSource = new ConceptSource(); - durationConceptSource.setUuid(Duration.SNOMED_CT_CONCEPT_SOURCE_HL7_CODE); - durationConcept.addConceptMapping(new ConceptMap(new ConceptReferenceTerm(durationConceptSource, "D", "Day"), new ConceptMapType())); - order.setDurationUnits(durationConcept); - - order.setDateActivated(new LocalDate().toDate()); - order.setUrgency(Order.Urgency.ON_SCHEDULED_DATE); - order.setScheduledDate(new LocalDate().plusDays(daysToStartAfter).toDate()); - order.setAutoExpireDate(new LocalDate().plusDays(daysToStartAfter + duration).toDate()); - - order.setDose(2.0); - order.setDoseUnits(concept(CAPSULE_DOSE_UNIT)); - order.setDosingInstructions(dosingInstructions); - - order.setRoute(concept(MOUTH_ROUTE)); - order.setAsNeeded(true); - - OrderFrequency orderFrequency = new OrderFrequency(); - orderFrequency.setFrequencyPerDay(2.0); - orderFrequency.setConcept(concept(TWICE_A_DAY_FREQUENCY)); - order.setFrequency(orderFrequency); - - order.setQuantity(1.0); - order.setQuantityUnits(concept(TABLET_QUANTITY_UNIT)); - - order.setInstructions(instructions); - order.setCommentToFulfiller(commentToFulfiller); - - Concept openMrsConcept ; - openMrsConcept = concept(HAS_SIDE_EFFECTS); - openMrsConcept.setDatatype(new ConceptDatatype()); - openMrsConcept.setShortName(new ConceptName(HAS_SIDE_EFFECTS, Locale.FRENCH)); - - order.setOrderReason(openMrsConcept); - order.setOrderReasonNonCoded(ORDER_REASON_NON_CODED); - - Field field = Order.class.getDeclaredField("orderNumber"); - field.setAccessible(true); - field.set(order, orderNumber); - - if (StringUtils.isNotBlank(previousOrderUuid)) { - Order previousOrder = new Order(); - previousOrder.setUuid(previousOrderUuid); - order.setPreviousOrder(previousOrder); - } - - return order; - } - - private Concept concept(String name) { - Concept doseUnitsConcept = new Concept(); - doseUnitsConcept.setFullySpecifiedName(new ConceptName(name, Locale.ENGLISH)); - return doseUnitsConcept; - } - -} diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_11Test.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_11Test.java deleted file mode 100644 index 0f0151993..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_11Test.java +++ /dev/null @@ -1,248 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.is; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; -import static org.mockito.Matchers.any; -import static org.mockito.Mockito.mock; -import static org.mockito.Mockito.times; -import static org.mockito.Mockito.verify; -import static org.mockito.MockitoAnnotations.initMocks; -import static org.powermock.api.mockito.PowerMockito.when; - -import java.text.ParseException; -import java.util.Date; -import java.util.HashSet; -import java.util.UUID; - -import org.apache.commons.lang3.time.DateUtils; -import org.junit.Before; -import org.junit.Rule; -import org.junit.Test; -import org.junit.rules.ExpectedException; -import org.mockito.Mock; -import org.mockito.invocation.InvocationOnMock; -import org.mockito.stubbing.Answer; -import org.openmrs.CareSetting; -import org.openmrs.Concept; -import org.openmrs.Drug; -import org.openmrs.DrugOrder; -import org.openmrs.Encounter; -import org.openmrs.EncounterProvider; -import org.openmrs.Order; -import org.openmrs.OrderType; -import org.openmrs.SimpleDosingInstructions; -import org.openmrs.api.APIException; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.encounter.builder.DrugOrderBuilder; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; - -public class OpenMRSDrugOrderMapper1_11Test { - - public static final String OUT_PATIENT_CARE_SETTING = "OUTPATIENT"; - public static final String DAY_DURATION_UNIT = "day"; - public static final String DRUG_UUID = "drug-uuid"; - private final Concept DAY_DURATION_CONCEPT = new Concept(); - private final String ORDER_REASON_TEXT = "has multiple side effects"; - private static final String ORDER_REASON_CONCEPT_NAME = "Side effects"; - - @Mock - private OrderService orderService; - - @Mock - private ConceptService conceptService; - - @Mock - private DosingInstructionsMapper dosingInstructionsMapper; - - @Mock - private OrderMetadataService orderMetadataService; - - @Rule - public ExpectedException expectedException = ExpectedException.none(); - - private OpenMRSDrugOrderMapper openMRSDrugOrderMapper; - private Encounter encounter; - - @Before - public void setup() { - initMocks(this); - - openMRSDrugOrderMapper = new OpenMRSDrugOrderMapper(orderService,conceptService, dosingInstructionsMapper, orderMetadataService); - - Drug drug = new Drug(); - drug.setUuid(DRUG_UUID); - when(conceptService.getDrugByUuid(DRUG_UUID)).thenReturn(drug); - - OrderType orderType = new OrderType("Drug Order", "", "org.openmrs.DrugOrder"); - when(orderService.getOrderTypeByConcept(any(Concept.class))).thenReturn(orderType); - - when(orderMetadataService.getDurationUnitsConceptByName(DAY_DURATION_UNIT)).thenReturn(DAY_DURATION_CONCEPT); - - CareSetting outPatientCareSetting = new CareSetting(OUT_PATIENT_CARE_SETTING, OUT_PATIENT_CARE_SETTING, CareSetting.CareSettingType.OUTPATIENT); - when(orderService.getCareSettingByName(OUT_PATIENT_CARE_SETTING)).thenReturn(outPatientCareSetting); - - when(dosingInstructionsMapper.map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class))).thenAnswer(argumentAt(1)); - - encounter = new Encounter(); - HashSet encounterProviders = new HashSet(); - EncounterProvider encounterProvider = new EncounterProvider(); - encounterProviders.add(encounterProvider); - encounter.setEncounterProviders(encounterProviders); - } - - - @Test - public void shouldMapNewDrugOrders() throws ParseException { - Date autoExpireDate = new Date(); - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder() - .withDrugUuid(DRUG_UUID) - .withDurationUnits(DAY_DURATION_UNIT) - .withAutoExpireDate(autoExpireDate) - .build(); - EncounterTransaction.Concept orderReasonConcept = mock(EncounterTransaction.Concept.class); - Concept concept = new Concept(); - when(orderReasonConcept.getUuid()).thenReturn("123"); - when(conceptService.getConceptByUuid("123")).thenReturn(concept); - orderReasonConcept.setName(ORDER_REASON_CONCEPT_NAME); - drugOrder.setOrderReasonConcept(orderReasonConcept); - drugOrder.setOrderReasonText(ORDER_REASON_TEXT); - - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertThat(openMrsDrugOrder.getCareSetting().getName(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(openMrsDrugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertTrue(openMrsDrugOrder.getDosingType().isAssignableFrom(SimpleDosingInstructions.class)); - assertTrue(openMrsDrugOrder instanceof DrugOrder); - assertThat(openMrsDrugOrder.getAction(), is(equalTo(Order.Action.NEW))); - assertThat(openMrsDrugOrder.getEncounter(), is(equalTo(encounter))); - assertThat(openMrsDrugOrder.getDuration(), is(equalTo(drugOrder.getDuration()))); - assertThat(openMrsDrugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_CONCEPT))); - assertThat(openMrsDrugOrder.getAutoExpireDate(), is(equalTo(autoExpireDate))); - assertThat(openMrsDrugOrder.getOrderReason(), is(equalTo(concept))); - assertThat(openMrsDrugOrder.getOrderReasonNonCoded(),is(equalTo(ORDER_REASON_TEXT))); - verify(dosingInstructionsMapper).map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class)); - } - - @Test - public void shouldMapRevisedDrugOrders() throws ParseException { - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - drugOrder.setAction(Order.Action.REVISE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertThat(revisedOpenMrsDrugOrder.getPreviousOrder().getUuid(), is(equalTo(openMrsDrugOrder.getUuid()))); - assertThat(revisedOpenMrsDrugOrder.getCareSetting().getName(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(revisedOpenMrsDrugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertTrue(revisedOpenMrsDrugOrder.getDosingType().isAssignableFrom(SimpleDosingInstructions.class)); - assertTrue(openMrsDrugOrder instanceof DrugOrder); - assertThat(revisedOpenMrsDrugOrder.getAction(), is(equalTo(Order.Action.REVISE))); - assertThat(revisedOpenMrsDrugOrder.getEncounter(), is(equalTo(encounter))); - assertThat(revisedOpenMrsDrugOrder.getDuration(), is(equalTo(drugOrder.getDuration()))); - assertThat(revisedOpenMrsDrugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_CONCEPT))); - verify(dosingInstructionsMapper, times(2)).map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class)); - } - - @Test - public void shouldClearScheduledDateAndUrgencyWhenScheduledOrderRevisedToStartFromToday(){ - DrugOrder previousOpenMrsDrugOrder = new DrugOrder(); - previousOpenMrsDrugOrder.setScheduledDate(DateUtils.addDays(new Date(), 2)); - previousOpenMrsDrugOrder.setUrgency(Order.Urgency.ON_SCHEDULED_DATE); - previousOpenMrsDrugOrder.setUuid(UUID.randomUUID().toString()); - Drug drug = new Drug(); - drug.setUuid(DRUG_UUID); - previousOpenMrsDrugOrder.setDrug(drug); - when(orderService.getOrderByUuid(previousOpenMrsDrugOrder.getUuid())).thenReturn(previousOpenMrsDrugOrder); - EncounterTransaction.DrugOrder revisedDrugOrder = new DrugOrderBuilder().withScheduledDate(null).withAction(Order.Action.REVISE.name()).withPreviousOrderUuid(previousOpenMrsDrugOrder.getUuid()).withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(revisedDrugOrder, encounter); - - assertThat(revisedOpenMrsDrugOrder.getUrgency(), is(equalTo(OpenMRSDrugOrderMapper.DEFAULT_URGENCY))); - assertNull(revisedOpenMrsDrugOrder.getScheduledDate()); - } - - @Test - public void shouldMapStoppedDrugOrders() throws ParseException { - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - drugOrder.setAction(Order.Action.DISCONTINUE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertThat(revisedOpenMrsDrugOrder.getPreviousOrder().getUuid(), is(equalTo(openMrsDrugOrder.getUuid()))); - assertThat(revisedOpenMrsDrugOrder.getCareSetting().getName(), is(equalTo(OUT_PATIENT_CARE_SETTING))); - assertThat(revisedOpenMrsDrugOrder.getDrug().getUuid(), is(equalTo(DRUG_UUID))); - assertTrue(revisedOpenMrsDrugOrder.getDosingType().isAssignableFrom(SimpleDosingInstructions.class)); - assertTrue(openMrsDrugOrder instanceof DrugOrder); - assertThat(revisedOpenMrsDrugOrder.getAction(), is(equalTo(Order.Action.DISCONTINUE))); - assertThat(revisedOpenMrsDrugOrder.getEncounter(), is(equalTo(encounter))); - assertThat(revisedOpenMrsDrugOrder.getDuration(), is(equalTo(drugOrder.getDuration()))); - assertThat(revisedOpenMrsDrugOrder.getDurationUnits(), is(equalTo(DAY_DURATION_CONCEPT))); - verify(dosingInstructionsMapper, times(2)).map(any(EncounterTransaction.DosingInstructions.class), any(DrugOrder.class)); - } - - - @Test - public void shouldNotReviseDrugOrderWithRetiredDrug(){ - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - openMrsDrugOrder.getDrug().setRetired(true); - drugOrder.setAction(Order.Action.REVISE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - drugOrder.getDrug().setName("Paracetamol"); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - - expectedException.expect(APIException.class); - expectedException.expectMessage("Drug has been retired : Paracetamol"); - - DrugOrder revisedOpenMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - } - - @Test - public void shouldDiscontinueDrugOrderWithRetiredDrug(){ - EncounterTransaction.DrugOrder drugOrder = new DrugOrderBuilder().withDrugUuid(DRUG_UUID).withDurationUnits(DAY_DURATION_UNIT).build(); - DrugOrder openMrsDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - openMrsDrugOrder.getDrug().setRetired(true); - drugOrder.setAction(Order.Action.DISCONTINUE.name()); - drugOrder.setPreviousOrderUuid(openMrsDrugOrder.getUuid()); - drugOrder.getDrug().setName("Paracetamol"); - when(orderService.getOrderByUuid(openMrsDrugOrder.getUuid())).thenReturn(openMrsDrugOrder); - - DrugOrder discontinuedDrugOrder = openMRSDrugOrderMapper.map(drugOrder, encounter); - - assertNotNull(discontinuedDrugOrder); - } - - private Answer argumentAt(final int arg) { - return new Answer() { - @Override - public DrugOrder answer(InvocationOnMock invocationOnMock) throws Throwable { - return (DrugOrder) invocationOnMock.getArguments()[arg]; - } - }; - } - -} diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper1_11Test.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper1_11Test.java deleted file mode 100644 index 11473c82f..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper1_11Test.java +++ /dev/null @@ -1,144 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.junit.Assert; -import org.junit.Before; -import org.junit.Test; -import org.mockito.Answers; -import org.mockito.Mock; -import org.mockito.MockitoAnnotations; -import org.openmrs.Concept; -import org.openmrs.Encounter; -import org.openmrs.EncounterProvider; -import org.openmrs.Provider; -import org.openmrs.Order; -import org.openmrs.api.ConceptService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.encounter.builder.OrderBuilder; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -import java.util.Date; -import java.util.HashSet; -import java.util.Set; - -import static org.mockito.Mockito.mock; -import static org.mockito.Mockito.verify; -import static org.mockito.Mockito.when; - -public class OpenMRSOrderMapper1_11Test { - - @Mock - private OrderService orderService; - - @Mock - private ConceptService conceptService; - - @Mock(answer=Answers.RETURNS_DEEP_STUBS) - private Encounter encounter; - - - @Before - public void setUp() throws Exception { - MockitoAnnotations.initMocks(this); - } - - - @Test - public void createNewOrderFromEtOrder() throws Exception { - Provider provider = mock(Provider.class); - handleEncounterProvider(provider); - - Concept mrsBloodConcept = mock(Concept.class); - when(conceptService.getConceptByUuid("bloodConceptUuid")).thenReturn(mrsBloodConcept); - - Date currentDate = new Date(); - - EncounterTransaction.Concept blood = new EncounterTransaction.Concept("bloodConceptUuid","blood"); - - EncounterTransaction.Order etOrder = new EncounterTransaction.Order(); - etOrder.setConcept(blood); - etOrder.setDateCreated(currentDate); - - OpenMRSOrderMapper orderMapper = new OpenMRSOrderMapper(orderService,conceptService); - - Order order = orderMapper.map(etOrder, encounter); - - Assert.assertEquals(encounter, order.getEncounter()); - Assert.assertEquals(mrsBloodConcept, order.getConcept()); - Assert.assertEquals(provider, order.getOrderer()); - } - - @Test - public void discontinueOrder() throws Exception { - Provider provider = mock(Provider.class); - handleEncounterProvider(provider); - - Order mrsOrder = new Order(); - when(orderService.getOrderByUuid("previous order uuid")).thenReturn(mrsOrder); - - Date createdDate = new Date(); - EncounterTransaction.Concept blood = new EncounterTransaction.Concept("bloodConceptUuid", "blood"); - - EncounterTransaction.Order etOrder = new OrderBuilder().withAction(org.openmrs.Order.Action.DISCONTINUE.toString()). - withUuid("orderUuid").withConcept(blood).withPreviousOrderUuid("previous order uuid").withDateCreated(createdDate).build(); - - OpenMRSOrderMapper orderMapper = new OpenMRSOrderMapper(orderService, conceptService); - Order order = orderMapper.map(etOrder, encounter); - - Assert.assertEquals(org.openmrs.Order.Action.DISCONTINUE, order.getAction()); - } - - @Test - public void createRevisedOrderFromEtOrder(){ - Provider provider = mock(Provider.class); - handleEncounterProvider(provider); - - Order originalOrder = new Order(); - when(orderService.getOrderByUuid("previousOrderUuid")).thenReturn(originalOrder); - - - Date currentDate = new Date(); - - - EncounterTransaction.Order etOrder = new EncounterTransaction.Order(); - etOrder.setUuid(null); - etOrder.setPreviousOrderUuid("previousOrderUuid"); - etOrder.setAutoExpireDate(currentDate); - etOrder.setCommentToFulfiller("Comment"); - - OpenMRSOrderMapper orderMapper = new OpenMRSOrderMapper(orderService,conceptService); - - Order order = orderMapper.map(etOrder, encounter); - - verify(orderService).getOrderByUuid("previousOrderUuid"); - Assert.assertEquals(encounter, order.getEncounter()); - Assert.assertEquals("Comment", order.getCommentToFulfiller()); - Assert.assertEquals(currentDate, order.getAutoExpireDate()); - Assert.assertEquals(provider, order.getOrderer()); - } - - private void handleEncounterProvider(Provider provider){ - EncounterProvider encounterProvider = mock(EncounterProvider.class); - when(encounterProvider.getProvider()).thenReturn(provider); - - Set providerSet = new HashSet(); - providerSet.add(encounterProvider); - - when(encounter.getEncounterProviders()).thenReturn(providerSet); - } - - - - } \ No newline at end of file diff --git a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java b/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java deleted file mode 100644 index f956fe93f..000000000 --- a/api-1.11/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java +++ /dev/null @@ -1,113 +0,0 @@ -/* - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.service; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.Mock; -import org.openmrs.Concept; -import org.openmrs.ConceptName; -import org.openmrs.OrderFrequency; -import org.openmrs.api.OrderService; -import org.openmrs.api.context.Context; -import org.openmrs.test.BaseModuleContextSensitiveTest; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Locale; - -import static org.hamcrest.core.Is.is; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertThat; -import static org.mockito.Mockito.when; - -public class OrderMetadataServiceTest extends BaseModuleContextSensitiveTest { - - public static final String DAYS_CONCEPT_NAME = "Days"; - public static final String WEEKS_CONCEPT_NAME = "Weeks"; - public static final String ONCE_A_DAY_CONCEPT_NAME = "Once A Day"; - public static final String TWICE_A_DAY_CONCEPT_NAME = "Twice A Day"; - - @Mock - private OrderService orderService; - - private OrderMetadataService orderMetadataService; - - @Before - public void setUp() throws Exception { - OrderService orderService = Context.getOrderService(); - orderMetadataService = new OrderMetadataService(orderService); - } - - @Test - public void shouldGetDurationConceptByName() throws Exception { - Concept days = createConcept(DAYS_CONCEPT_NAME); - Concept weeks = createConcept(WEEKS_CONCEPT_NAME); - when(orderService.getDurationUnits()).thenReturn(Arrays.asList(days, weeks)); - - Concept durationUnitsConcept = orderMetadataService.getDurationUnitsConceptByName(DAYS_CONCEPT_NAME); - - assertThat(durationUnitsConcept, is(days)); - } - - @Test - public void shouldReturnNullIfDurationConceptDoesNotExist() throws Exception { - when(orderService.getDurationUnits()).thenReturn(new ArrayList()); - - Concept durationUnitsConcept = orderMetadataService.getDurationUnitsConceptByName(DAYS_CONCEPT_NAME); - - assertNull(durationUnitsConcept); - } - - @Test - public void shouldReturnNullDurationUnitsForNullInput() { - assertNull(orderMetadataService.getDurationUnitsConceptByName(null)); - } - - @Test - public void shouldGetOrderFrequencyByName() throws Exception { - OrderFrequency onceADayOrderFrequency = new OrderFrequency(); - onceADayOrderFrequency.setConcept(createConcept(ONCE_A_DAY_CONCEPT_NAME)); - - OrderFrequency twiceADayOrderFrequency = new OrderFrequency(); - twiceADayOrderFrequency.setConcept(createConcept(TWICE_A_DAY_CONCEPT_NAME)); - - when(orderService.getOrderFrequencies(false)).thenReturn(Arrays.asList(onceADayOrderFrequency, twiceADayOrderFrequency)); - - OrderFrequency orderFrequency = orderMetadataService.getOrderFrequencyByName(ONCE_A_DAY_CONCEPT_NAME, false); - - assertThat(orderFrequency, is(onceADayOrderFrequency)); - } - - @Test - public void shouldReturnNullIfOrderFrequencyNotPresent() throws Exception { - when(orderService.getOrderFrequencies(false)).thenReturn(new ArrayList()); - - OrderFrequency orderFrequency = orderMetadataService.getOrderFrequencyByName(ONCE_A_DAY_CONCEPT_NAME, false); - - assertNull(orderFrequency); - } - - @Test - public void shouldReturnNullOrderFrequencyForNullInput() { - assertNull(orderMetadataService.getOrderFrequencyByName(null, false)); - } - - - private Concept createConcept(String conceptName) { - Concept concept = new Concept(); - concept.setPreferredName(new ConceptName(conceptName, Locale.getDefault())); - return concept; - } -} \ No newline at end of file diff --git a/api-1.12/pom.xml b/api-1.12/pom.xml deleted file mode 100644 index 526f8dc5a..000000000 --- a/api-1.12/pom.xml +++ /dev/null @@ -1,87 +0,0 @@ - - 4.0.0 - - - org.openmrs.module - emrapi - 1.37.0-SNAPSHOT - - - emrapi-api-1.12 - jar - EMR API Module API 1.12 - API project for EMRAPI - - - 1.12.0 - - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - provided - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - provided - - - - org.openmrs.api - openmrs-api - test-jar - ${openMRSVersion} - test - - - - org.openmrs.test - openmrs-test - ${openMRSVersion} - pom - test - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-pre2.2 - ${project.parent.version} - provided - - - - - - - - src/main/resources - true - - - - - - src/test/resources - - **/*.properties - **/*.xml - - true - - - src/test/resources - - **/*.properties - **/*.xml - - false - - - - - diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_12.java b/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_12.java deleted file mode 100644 index d7f506a21..000000000 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DrugMapper1_12.java +++ /dev/null @@ -1,38 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - - -import org.openmrs.Drug; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.encounter.DrugMapper; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.stereotype.Component; - -@Component(value = "drugMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.12.0 - 2.*") -public class DrugMapper1_12 implements DrugMapper { - - public EncounterTransaction.Drug map(Drug drug){ - EncounterTransaction.Drug encounterTransactionDrug = new EncounterTransaction.Drug(); - encounterTransactionDrug.setName(drug.getDisplayName()); - if (drug.getDosageForm() != null) { - encounterTransactionDrug.setForm(drug.getDosageForm().getName().getName()); - } - encounterTransactionDrug.setStrength(drug.getStrength()); - encounterTransactionDrug.setUuid(drug.getUuid()); - return encounterTransactionDrug; - } - -} diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper1_12.java b/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper1_12.java deleted file mode 100644 index bbc4601c0..000000000 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper1_12.java +++ /dev/null @@ -1,81 +0,0 @@ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.openmrs.Encounter; -import org.openmrs.Obs; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.api.ConceptService; -import org.openmrs.api.ObsService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.EmrApiProperties; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -import java.lang.reflect.InvocationTargetException; -import java.lang.reflect.Method; - -@Component(value = "obsMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.12.0 - 2.*") -public class ObsMapper1_12 extends ObsMapper { - - private Log log = LogFactory.getLog(this.getClass()); - - @Autowired - public ObsMapper1_12(ConceptService conceptService, - EmrApiProperties emrApiProperties, - ObsService obsService, OrderService orderService) { - super(conceptService,emrApiProperties,obsService,orderService); - } - - @Override - protected Obs newObservation(Encounter encounter,EncounterTransaction.Observation observationData) { - Obs obs = super.newObservation(encounter,observationData); - obs.setFormField(observationData.getFormNamespace(),observationData.getFormFieldPath()); - setInterpretationAndStatus(obs, observationData); - return obs; - } - - @Override - protected void mapObservationProperties(EncounterTransaction.Observation observationData, Obs observation) { - super.mapObservationProperties(observationData, observation); - setInterpretationAndStatus(observation, observationData); - } - - - /* - This method uses java reflection to set Interpretation and Status as adding a new module dependency - for just setting two fields, a lot of duplicate code had to be added. - This method can be moved to platform 2.1 dependency, once the platform 2.1 dependency is added. - */ - private void setInterpretationAndStatus(Obs obs,EncounterTransaction.Observation observationData){ - try { - Class interpretationClass = (Class) Class.forName("org.openmrs.Obs$Interpretation"); - Class statusClass = (Class) Class.forName("org.openmrs.Obs$Status"); - - Method setInterpretation = - obs.getClass().getMethod("setInterpretation", interpretationClass); - Method setStatus = obs.getClass().getMethod("setStatus", statusClass); - - - Enum interpretation = observationData.getInterpretation() != null ? - Enum.valueOf(interpretationClass, observationData.getInterpretation()) : null; - setInterpretation.invoke(obs, interpretation); - - if (observationData.getStatus() != null) { - Enum status = Enum.valueOf(statusClass, observationData.getStatus()); - setStatus.invoke(obs, status); - } - - } catch (NoSuchMethodException e) { - log.warn("No such method exists", e); - } catch (IllegalAccessException e) { - log.warn("Illegal access of methods via reflection", e); - } catch (InvocationTargetException e) { - log.warn("Exception during Method invocation", e); - } catch (ClassNotFoundException e) { - log.warn("No class found", e); - } - } -} diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObservationMapper1_12.java b/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObservationMapper1_12.java deleted file mode 100644 index 775b9b60d..000000000 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObservationMapper1_12.java +++ /dev/null @@ -1,76 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.openmrs.Obs; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.encounter.ConceptMapper; -import org.openmrs.module.emrapi.encounter.DrugMapper; -import org.openmrs.module.emrapi.encounter.ObservationMapper; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -import java.lang.reflect.InvocationTargetException; -import java.lang.reflect.Method; - -@Component(value = "observationMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.12.0 - 2.*") -public class ObservationMapper1_12 extends ObservationMapper { - - private Log log = LogFactory.getLog(this.getClass()); - - @Autowired - public ObservationMapper1_12(ConceptMapper conceptMapper, DrugMapper drugMapper, UserMapper userMapper){ - super(conceptMapper, drugMapper, userMapper); - } - - @Override - public EncounterTransaction.Observation map(Obs obs) { - EncounterTransaction.Observation observation = super.map(obs); - observation.setFormNamespace(obs.getFormFieldNamespace()); - observation.setFormFieldPath(obs.getFormFieldPath()); - setInterpretationAndStatus(observation, obs); - return observation; - } - - /* - This method uses java reflection to get Interpretation and Status as adding a new module dependency - for just setting two fields, a lot of duplicate code had to be added. - This method can be moved to platform 2.1 dependency, once the platform 2.1 dependency is added. - */ - private void setInterpretationAndStatus(EncounterTransaction.Observation observation, Obs obs) { - try { - Method getInterpretation = obs.getClass().getDeclaredMethod("getInterpretation"); - Method getStatus = obs.getClass().getDeclaredMethod("getStatus"); - - Enum obsInterpretation = (Enum) getInterpretation.invoke(obs); - Enum obsStatus = (Enum) getStatus.invoke(obs); - - String interpretation = (obsInterpretation != null) ? obsInterpretation.name() : null; - String status = (obsStatus != null) ? obsStatus.name() : null; - - observation.setInterpretation(interpretation); - observation.setStatus(status); - } catch (IllegalAccessException e) { - log.warn("Illegal access of methods via reflection", e); - } catch (NoSuchMethodException e) { - log.warn("No such method exists", e); - } catch (InvocationTargetException e) { - log.warn("Exception during Method invocation", e); - } - } -} diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_12.java b/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_12.java deleted file mode 100644 index 85ba7dd97..000000000 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_12.java +++ /dev/null @@ -1,173 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - *

- * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - *

- * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.apache.commons.lang3.StringUtils; -import org.openmrs.Concept; -import org.openmrs.DrugOrder; -import org.openmrs.OrderGroup; -import org.openmrs.Encounter; -import org.openmrs.Order; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.api.db.hibernate.HibernateUtil; -import org.openmrs.module.emrapi.CareSettingType; -import org.openmrs.module.emrapi.encounter.ConceptMapper; -import org.openmrs.module.emrapi.encounter.OrderMapper; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.stereotype.Component; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.Comparator; -import java.util.List; - -@Component(value = "orderMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.12.0 - 2.*") -public class OrderMapper1_12 implements OrderMapper { - - private final ConceptMapper conceptMapper = new ConceptMapper(); - - @Override - public List mapDrugOrders(Encounter encounter) { - - List orders = new ArrayList(); - for (Order order : encounter.getOrders()) { - order = HibernateUtil.getRealObjectFromProxy(order); - if (DrugOrder.class.equals(order.getClass())) { - orders.add(mapDrugOrder((DrugOrder) order)); - } - } - sortByOrderNumber(orders); - return orders; - } - - private void sortByOrderNumber(List orders) { - Collections.sort(orders, new Comparator() { - @Override - public int compare(EncounterTransaction.DrugOrder drugOrder1, EncounterTransaction.DrugOrder drugOrder2) { - return drugOrder1.getOrderNumber().compareTo(drugOrder2.getOrderNumber()); - } - }); - } - - @Override - public List mapOrders(Encounter encounter) { - List orders = new ArrayList(); - for (Order order : encounter.getOrders()) { - order = HibernateUtil.getRealObjectFromProxy(order); - if (Order.class.equals(order.getClass())) { - orders.add(mapOrder(order)); - } - } - return orders; - } - - @Override - public EncounterTransaction.DrugOrder mapDrugOrder(DrugOrder openMRSDrugOrder) { - EncounterTransaction.DrugOrder drugOrder = new EncounterTransaction.DrugOrder(); - drugOrder.setUuid(openMRSDrugOrder.getUuid()); - if (openMRSDrugOrder.getCareSetting() != null) { - drugOrder.setCareSetting(CareSettingType.valueOf(openMRSDrugOrder.getCareSetting().getCareSettingType().toString())); - } - drugOrder.setAction(openMRSDrugOrder.getAction().name()); - drugOrder.setOrderType(openMRSDrugOrder.getOrderType().getName()); - - Order previousOrder = openMRSDrugOrder.getPreviousOrder(); - if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())) { - drugOrder.setPreviousOrderUuid(previousOrder.getUuid()); - } - - drugOrder.setDrugNonCoded(openMRSDrugOrder.getDrugNonCoded()); - if (openMRSDrugOrder.getDrug() != null){ - EncounterTransaction.Drug encounterTransactionDrug = new DrugMapper1_12().map(openMRSDrugOrder.getDrug()); - drugOrder.setDrug(encounterTransactionDrug); - } - - drugOrder.setDosingInstructionType(openMRSDrugOrder.getDosingType().getName()); - drugOrder.setDuration(openMRSDrugOrder.getDuration()); - drugOrder.setDurationUnits(getConceptName(openMRSDrugOrder.getDurationUnits())); - - drugOrder.setConcept(conceptMapper.map(openMRSDrugOrder.getConcept())); - drugOrder.setScheduledDate(openMRSDrugOrder.getScheduledDate()); - drugOrder.setDateActivated(openMRSDrugOrder.getDateActivated()); - drugOrder.setEffectiveStartDate(openMRSDrugOrder.getEffectiveStartDate()); - drugOrder.setAutoExpireDate(openMRSDrugOrder.getAutoExpireDate()); - drugOrder.setEffectiveStopDate(openMRSDrugOrder.getEffectiveStopDate()); - - drugOrder.setDateStopped(openMRSDrugOrder.getDateStopped()); - - EncounterTransaction.DosingInstructions dosingInstructions = new EncounterTransaction.DosingInstructions(); - dosingInstructions.setDose(openMRSDrugOrder.getDose()); - dosingInstructions.setDoseUnits(getConceptName(openMRSDrugOrder.getDoseUnits())); - dosingInstructions.setRoute(getConceptName(openMRSDrugOrder.getRoute())); - dosingInstructions.setAsNeeded(openMRSDrugOrder.getAsNeeded()); - - if (openMRSDrugOrder.getFrequency() != null) { - dosingInstructions.setFrequency(openMRSDrugOrder.getFrequency().getName()); - } - if (openMRSDrugOrder.getQuantity() != null) { - dosingInstructions.setQuantity(openMRSDrugOrder.getQuantity()); - } - dosingInstructions.setQuantityUnits(getConceptName(openMRSDrugOrder.getQuantityUnits())); - dosingInstructions.setAdministrationInstructions(openMRSDrugOrder.getDosingInstructions()); - drugOrder.setDosingInstructions(dosingInstructions); - - drugOrder.setInstructions(openMRSDrugOrder.getInstructions()); - drugOrder.setCommentToFulfiller(openMRSDrugOrder.getCommentToFulfiller()); - - drugOrder.setVoided(openMRSDrugOrder.getVoided()); - drugOrder.setVoidReason(openMRSDrugOrder.getVoidReason()); - drugOrder.setOrderNumber(openMRSDrugOrder.getOrderNumber()); - - drugOrder.setOrderReasonConcept(conceptMapper.map(openMRSDrugOrder.getOrderReason())); - drugOrder.setOrderReasonText(openMRSDrugOrder.getOrderReasonNonCoded()); - OrderGroup openMRSOrderGroup = openMRSDrugOrder.getOrderGroup(); - if(openMRSOrderGroup != null) { - EncounterTransaction.OrderGroup orderGroup = new EncounterTransaction.OrderGroup(openMRSOrderGroup.getUuid()); - EncounterTransaction.OrderSet orderSet = new EncounterTransaction.OrderSet(openMRSOrderGroup.getOrderSet().getUuid()); - orderGroup.setOrderSet(orderSet); - drugOrder.setOrderGroup(orderGroup); - drugOrder.setSortWeight(openMRSDrugOrder.getSortWeight()); - } - return drugOrder; - } - - @Override - public EncounterTransaction.Order mapOrder(Order order) { - EncounterTransaction.Order emrOrder = new EncounterTransaction.Order(); - emrOrder.setUuid(order.getUuid()); - emrOrder.setConcept(conceptMapper.map(order.getConcept())); - emrOrder.setOrderType(order.getOrderType().getName()); - emrOrder.setInstructions(order.getInstructions()); - emrOrder.setDateCreated(order.getDateCreated()); - emrOrder.setDateChanged(order.getDateChanged()); - emrOrder.setDateStopped(order.getDateStopped()); - emrOrder.setOrderNumber(order.getOrderNumber()); - emrOrder.setCommentToFulfiller(order.getCommentToFulfiller()); - emrOrder.setAction(order.getAction().name()); - emrOrder.setUrgency(String.valueOf(order.getUrgency())); - Order previousOrder = order.getPreviousOrder(); - if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())) { - emrOrder.setPreviousOrderUuid(previousOrder.getUuid()); - } - return emrOrder; - } - - private String getConceptName(Concept concept) { - if (concept != null) { - return concept.getName().getName(); - } - return null; - } -} \ No newline at end of file diff --git a/api-1.12/src/main/resources/moduleApplicationContext.xml b/api-1.12/src/main/resources/moduleApplicationContext.xml deleted file mode 100644 index d3bae9f83..000000000 --- a/api-1.12/src/main/resources/moduleApplicationContext.xml +++ /dev/null @@ -1,32 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - \ No newline at end of file diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelper1_12Test.java b/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelper1_12Test.java deleted file mode 100644 index 6ef480c05..000000000 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelper1_12Test.java +++ /dev/null @@ -1,102 +0,0 @@ -package org.openmrs.module.emrapi.encounter; - - -import org.junit.Test; -import org.mockito.Mock; -import org.openmrs.Concept; -import org.openmrs.ConceptDatatype; -import org.openmrs.Encounter; -import org.openmrs.Obs; -import org.openmrs.Patient; -import org.openmrs.api.ConceptService; -import org.openmrs.api.ObsService; -import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.EmrApiProperties; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.mapper.ObsMapper1_12; -import org.openmrs.module.emrapi.test.builder.ConceptDataTypeBuilder; - -import java.text.ParseException; -import java.text.SimpleDateFormat; -import java.util.Date; -import java.util.List; - -import static java.util.Arrays.asList; -import static org.junit.Assert.assertEquals; -import static org.mockito.Mockito.when; -import static org.mockito.MockitoAnnotations.initMocks; - -public class EncounterObservationServiceHelper1_12Test { - - - public static final String TEXT_CONCEPT_UUID = "text-concept-uuid"; - - @Mock - private ConceptService conceptService; - - @Mock - private ObsService obsService; - @Mock - private DiagnosisMetadata diagnosisMetadata; - @Mock - private EmrApiProperties emrApiProperties; - - @Mock - private OrderService orderService; - - @Mock - private Encounter encounter; - - - @Mock - private EncounterTransaction.Observation observation, rootObservation; - - private ObsMapper1_12 obsMapper1_12 = null; - - - @Test - public void shouldCreateNewObservationWithNamespace() throws ParseException { - initMocks(this); - obsMapper1_12 = new ObsMapper1_12(conceptService,emrApiProperties,obsService,orderService); - EncounterObservationServiceHelper encounterObservationServiceHelper = new EncounterObservationServiceHelper(conceptService, emrApiProperties, obsService, orderService,obsMapper1_12); - - newConcept(new ConceptDataTypeBuilder().text(), TEXT_CONCEPT_UUID); - List observations = asList( - new EncounterTransaction.Observation() - .setConcept(getConcept(TEXT_CONCEPT_UUID)) - .setValue("text value") - .setComment("overweight") - .setFormNamespace("formNamespace") - .setFormFieldPath("formFieldPath") - ); - - Date encounterDateTime = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss.SSSZ").parse("2005-01-01T00:00:00.000+0000"); - Patient patient = new Patient(); - - Encounter encounter = new Encounter(); - encounter.setUuid("e-uuid"); - encounter.setPatient(patient); - encounter.setEncounterDatetime(encounterDateTime); - - encounterObservationServiceHelper.update(encounter, observations); - - assertEquals(1, encounter.getObs().size()); - Obs textObservation = encounter.getObs().iterator().next(); - assertEquals("formNamespace",textObservation.getFormFieldNamespace()); - assertEquals("formFieldPath",textObservation.getFormFieldPath()); - } - - private Concept newConcept(ConceptDatatype conceptDatatype, String conceptUuid) { - Concept concept = new Concept(); - concept.setDatatype(conceptDatatype); - concept.setUuid(conceptUuid); - when(conceptService.getConceptByUuid(conceptUuid)).thenReturn(concept); - return concept; - } - - private EncounterTransaction.Concept getConcept(String conceptUuid) { - return new EncounterTransaction.Concept(conceptUuid, "concept_name"); - } - -} \ No newline at end of file diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java b/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java deleted file mode 100644 index f9663ac76..000000000 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java +++ /dev/null @@ -1,33 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.builder; - -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -public class DosingInstructionsBuilder { - - public static EncounterTransaction.DosingInstructions sample() { - EncounterTransaction.DosingInstructions dosingInstructions = new EncounterTransaction.DosingInstructions(); - dosingInstructions.setDose(2.0); - dosingInstructions.setDoseUnits("Capsule"); - dosingInstructions.setRoute("PO"); - dosingInstructions.setFrequency("QDS"); - dosingInstructions.setAsNeeded(false); - dosingInstructions.setAdministrationInstructions("AC"); - dosingInstructions.setQuantity(1.0); - dosingInstructions.setQuantityUnits("bottle"); - dosingInstructions.setNumberOfRefills(1); - return dosingInstructions; - } -} diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/ObsBuilder1_12.java b/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/ObsBuilder1_12.java deleted file mode 100644 index ef76ab115..000000000 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/ObsBuilder1_12.java +++ /dev/null @@ -1,31 +0,0 @@ -/* - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ - -package org.openmrs.module.emrapi.encounter.builder; - -import org.openmrs.Obs; -import org.openmrs.module.emrapi.test.builder.ObsBuilder; - -/** - * Helper for building Obs in unit tests - */ -public class ObsBuilder1_12 extends ObsBuilder{ - - Obs obs = super.get(); - - public ObsBuilder setFormField(String formNameSpace, String formFieldPath){ - obs.setFormField(formNameSpace, formFieldPath); - return this; - } -} diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/ObservationMapper1_12Test.java b/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/ObservationMapper1_12Test.java deleted file mode 100644 index 257b051fd..000000000 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/ObservationMapper1_12Test.java +++ /dev/null @@ -1,76 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter.mapper; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.Mock; -import org.mockito.MockitoAnnotations; -import org.openmrs.*; -import org.openmrs.module.emrapi.encounter.ConceptMapper; -import org.openmrs.module.emrapi.encounter.DrugMapper; -import org.openmrs.module.emrapi.encounter.builder.ObsBuilder1_12; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; - -import java.util.UUID; - -import static org.junit.Assert.assertEquals; -import static org.mockito.Mockito.mock; -import static org.mockito.Mockito.when; - -public class ObservationMapper1_12Test { - @Mock - private Concept concept; - @Mock - private DrugMapper drugMapper; - @Mock - private ConceptMapper conceptMapper; - @Mock - private ConceptNumeric conceptNumeric; - @Mock - private ConceptDatatype conceptDatatype; - private ObservationMapper1_12 observationMapper; - private ObsBuilder1_12 obsBuilder; - - @Before - public void setUp(){ - User creator = mock(User.class); - when(creator.getUuid()).thenReturn("uuid"); - PersonName mockPersonName = mock(PersonName.class); - when(mockPersonName.toString()).thenReturn("superman"); - when(creator.getPersonName()).thenReturn(mockPersonName); - MockitoAnnotations.initMocks(this); - observationMapper = new ObservationMapper1_12(conceptMapper, drugMapper, new UserMapper()); - obsBuilder = new ObsBuilder1_12(); - obsBuilder.setUuid(UUID.randomUUID().toString()).setConcept(concept).setCreator(creator); - when(concept.getName()).thenReturn(new ConceptName()); - when(concept.getDatatype()).thenReturn(conceptDatatype); - when(concept.getConceptClass()).thenReturn(getConceptClass("conceptClassName")); - } - - @Test - public void shouldMapObservationWithNumericValue(){ - when(conceptDatatype.isNumeric()).thenReturn(true); - Obs obs = obsBuilder.setFormField("form uuid", "formFieldPath").get(); - - EncounterTransaction.Observation observation = observationMapper.map(obs); - assertEquals(observation.getFormNamespace(), "form uuid"); - assertEquals(observation.getFormFieldPath(), "formFieldPath"); - } - private ConceptClass getConceptClass(String conceptClassName) { - ConceptClass conceptClass = new ConceptClass(); - conceptClass.setName(conceptClassName); - return conceptClass; - } -} diff --git a/api-2.2/pom.xml b/api-2.2/pom.xml deleted file mode 100644 index 4ae3afcbb..000000000 --- a/api-2.2/pom.xml +++ /dev/null @@ -1,121 +0,0 @@ - - 4.0.0 - - - org.openmrs.module - emrapi - 1.37.0-SNAPSHOT - - - emrapi-api-2.2 - jar - EMR API Module API 2.2 - API project for EMRAPI - - - 2.2.0-alpha - - - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-pre2.2 - ${project.parent.version} - provided - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - provided - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - provided - - - - org.openmrs.api - openmrs-api - test-jar - ${openMRSVersion} - test - - - - org.openmrs.test - openmrs-test - ${openMRSVersion} - pom - test - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - test-jar - test - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-1.10 - ${project.parent.version} - provided - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-1.11 - ${project.parent.version} - provided - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-1.12 - ${project.parent.version} - provided - - - - org.openmrs.module - reportingcompatibility-api - 2.0.4 - provided - - - - - - - src/main/resources - true - - - - - - src/test/resources - - **/*.properties - **/*.xml - - true - - - src/test/resources - - **/*.properties - **/*.xml - - false - - - - - diff --git a/api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceImpl2_2.java b/api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceImpl2_2.java deleted file mode 100644 index b3f58ea0e..000000000 --- a/api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceImpl2_2.java +++ /dev/null @@ -1,71 +0,0 @@ -package org.openmrs.module.emrapi.diagnosis; - -import org.openmrs.Encounter; -import org.openmrs.Obs; -import org.openmrs.Patient; -import org.openmrs.api.AdministrationService; -import org.openmrs.api.context.Context; -import org.openmrs.module.emrapi.EmrApiConstants; - -import java.util.Date; -import java.util.List; - -/** - * class implementing the DiagnosisService while delegating calls to the core module - * */ -public class DiagnosisServiceImpl2_2 extends DiagnosisServiceImpl implements DiagnosisService { - - private AdministrationService adminService; - - public void setAdminService(AdministrationService adminService) { - this.adminService = adminService; - } - - public List getDiagnoses(Patient patient, Date fromDate) { - if (adminService.getGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE,"false").equalsIgnoreCase("true")) { - return super.getDiagnoses(patient,fromDate); - } - else { - return DiagnosisUtils.convert(Context.getDiagnosisService().getDiagnoses(patient, fromDate)); - } - } - - public List getUniqueDiagnoses(Patient patient, Date fromDate){ - if (adminService.getGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "false").equalsIgnoreCase("true")) { - return super.getUniqueDiagnoses(patient, fromDate); - } - else { - return DiagnosisUtils.convert(Context.getDiagnosisService().getUniqueDiagnoses(patient, fromDate)); - } - - } - - public List getPrimaryDiagnoses(Encounter encounter){ - if (adminService.getGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "false").equalsIgnoreCase("true")) { - return super.getPrimaryDiagnoses(encounter); - } - else { - return DiagnosisUtils.convert(Context.getDiagnosisService().getPrimaryDiagnoses(encounter)); - } - } - - public boolean hasDiagnosis(Encounter encounter, Diagnosis diagnosis){ - if (adminService.getGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "false").equalsIgnoreCase("true")) { - return super.hasDiagnosis(encounter, diagnosis); - } - else { - return true; - } - } - - public List codeNonCodedDiagnosis(Obs nonCodedObs, List diagnoses){ - if (adminService.getGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "false").equalsIgnoreCase("true")) { - return super.codeNonCodedDiagnosis(nonCodedObs, diagnoses); - - } - else { - return null; - } - } - -} diff --git a/api-2.2/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImpl2_2.java b/api-2.2/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImpl2_2.java deleted file mode 100644 index 7b4ada086..000000000 --- a/api-2.2/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImpl2_2.java +++ /dev/null @@ -1,47 +0,0 @@ -package org.openmrs.module.emrapi.visit; - -import org.openmrs.Obs; -import org.openmrs.Visit; -import org.openmrs.api.AdministrationService; -import org.openmrs.api.VisitService; -import org.openmrs.module.emrapi.EmrApiConstants; -import org.openmrs.module.emrapi.diagnosis.Diagnosis; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; -import org.openmrs.module.emrapi.diagnosis.DiagnosisUtils; -import org.openmrs.module.emrapi.diagnosis.EmrDiagnosisDAO; - -import java.util.ArrayList; -import java.util.List; - -public class EmrVisitServiceImpl2_2 extends EmrVisitServiceImpl implements EmrVisitService { - - private AdministrationService adminService; - - private EmrDiagnosisDAO emrDiagnosisDAO; - - public void setAdminService(AdministrationService adminService) { - this.adminService = adminService; - } - - public void setEmrDiagnosisDAO(EmrDiagnosisDAO emrDiagnosisDAO) { - this.emrDiagnosisDAO = emrDiagnosisDAO; - } - - public EmrVisitServiceImpl2_2(VisitService visitService, VisitResponseMapper visitResponseMapper) { - super(visitService, visitResponseMapper); - } - - @Override - public List getDiagnoses(Visit visit, DiagnosisMetadata diagnosisMetadata, Boolean primaryOnly, Boolean confirmedOnly) { - if (adminService.getGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "false").equalsIgnoreCase("true")) { - return super.getDiagnoses(visit, diagnosisMetadata, primaryOnly, confirmedOnly); - } else { - List diagnoses = emrDiagnosisDAO.getDiagnoses(visit, primaryOnly, confirmedOnly); - List diagnosisList = new ArrayList(); - for (Diagnosis diagnosis : DiagnosisUtils.convert(diagnoses)) { - diagnosisList.add(diagnosisMetadata.buildDiagnosisObsGroup(diagnosis)); - } - return diagnosisList; - } - } -} diff --git a/api-2.2/src/main/resources/moduleApplicationContext.xml b/api-2.2/src/main/resources/moduleApplicationContext.xml deleted file mode 100644 index 7781e7418..000000000 --- a/api-2.2/src/main/resources/moduleApplicationContext.xml +++ /dev/null @@ -1,50 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - ${project.parent.groupId}.${project.parent.artifactId}.diagnosis.DiagnosisService - - - - - - - - - - - - - - - - - - - - diff --git a/api-pre2.2/pom.xml b/api-pre2.2/pom.xml deleted file mode 100644 index ee3b7af26..000000000 --- a/api-pre2.2/pom.xml +++ /dev/null @@ -1,75 +0,0 @@ - - - - org.openmrs.module - emrapi - 1.37.0-SNAPSHOT - - 4.0.0 - - emrapi-api-pre2.2 - jar - EMR API Module API 2.2 - API project for EMRAPI - - - 2.2.0-alpha - - - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - provided - - - - org.openmrs.api - openmrs-api - test-jar - ${openMRSVersion} - test - - - - org.openmrs.test - openmrs-test - ${openMRSVersion} - pom - test - - - - - - - - src/main/resources - true - - - - - - src/test/resources - - **/*.properties - **/*.xml - - true - - - src/test/resources - - **/*.properties - **/*.xml - - false - - - - - - diff --git a/api-pre2.2/src/main/resources/liquibase.xml b/api-pre2.2/src/main/resources/liquibase.xml deleted file mode 100644 index af757cae0..000000000 --- a/api-pre2.2/src/main/resources/liquibase.xml +++ /dev/null @@ -1,84 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Creating unique index on condition.uuid column - - - - - - diff --git a/api-pre2.2/src/main/resources/moduleApplicationContext.xml b/api-pre2.2/src/main/resources/moduleApplicationContext.xml deleted file mode 100644 index e3c88623b..000000000 --- a/api-pre2.2/src/main/resources/moduleApplicationContext.xml +++ /dev/null @@ -1,43 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - ${project.parent.groupId}.${project.parent.artifactId}.diagnosis.DiagnosisService - - - - - - - - - - - - - - diff --git a/api/pom.xml b/api/pom.xml index 6b94e11af..c4edc8c72 100644 --- a/api/pom.xml +++ b/api/pom.xml @@ -4,7 +4,7 @@ org.openmrs.module emrapi - 1.37.0-SNAPSHOT + 2.0.0-SNAPSHOT emrapi-api @@ -12,19 +12,7 @@ EMR API Module API API project for EMRAPI - - 1.9.9 - - - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-pre2.2 - ${project.parent.version} - provided - org.openmrs.api @@ -62,6 +50,7 @@ test + @@ -91,5 +80,5 @@ false - + diff --git a/api/src/main/java/org/openmrs/module/emrapi/CareSettingType.java b/api/src/main/java/org/openmrs/module/emrapi/CareSettingType.java deleted file mode 100644 index fbfeaa53f..000000000 --- a/api/src/main/java/org/openmrs/module/emrapi/CareSettingType.java +++ /dev/null @@ -1,24 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi; - - -/** - * Mimicks the new CareSettingType available in 1.10.x; we should migrate this to use the 1.10.x enum - * at some point - */ -public enum CareSettingType { - OUTPATIENT, INPATIENT -} - diff --git a/api/src/main/java/org/openmrs/module/emrapi/account/AccountDomainWrapper.java b/api/src/main/java/org/openmrs/module/emrapi/account/AccountDomainWrapper.java index 65bd40e42..c5c079b78 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/account/AccountDomainWrapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/account/AccountDomainWrapper.java @@ -338,15 +338,7 @@ public void unlock() { } user.removeUserProperty(OpenmrsConstants.USER_PROPERTY_LOCKOUT_TIMESTAMP); user.removeUserProperty(OpenmrsConstants.USER_PROPERTY_LOGIN_ATTEMPTS); - - // hack to work-around change to service methods for saving users in Core 2.x - try { - Method saveUser = UserService.class.getDeclaredMethod("saveUser", User.class); - saveUser.invoke(userService, user); - } - catch (Exception e) { - userService.createUser(user, password); - }; + userService.saveUser(user); } public void save() { @@ -362,14 +354,7 @@ public void save() { userService.createUser(user, password); } else { - // hack to work-around change to service methods for saving users in Core 2.x - try { - Method saveUser = UserService.class.getDeclaredMethod("saveUser", User.class); - saveUser.invoke(userService, user); - } - catch (Exception e) { - userService.createUser(user, password); - } + userService.saveUser(user); } // the saveUser(user, password) method will *only* set a password for a new user, it won't change an existing one diff --git a/api/src/main/java/org/openmrs/module/emrapi/db/EmrVisitDAOImpl.java b/api/src/main/java/org/openmrs/module/emrapi/db/EmrVisitDAOImpl.java index 4896d2af0..9855283f3 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/db/EmrVisitDAOImpl.java +++ b/api/src/main/java/org/openmrs/module/emrapi/db/EmrVisitDAOImpl.java @@ -87,20 +87,10 @@ public List getConfirmedDiagnoses(Visit visit, DiagnosisMetadata diagnosisM @SuppressWarnings("unchecked") @Override public List getConfirmedPrimaryDiagnoses(Visit visit, DiagnosisMetadata diagnosisMetadata) { - String queryString = ""; - try { - queryString = IOUtils.toString(getClass().getClassLoader().getResourceAsStream(CONFIRMED_PRIMARY_DIAGNOSES_HQL)); - } catch (IOException e) { - log.error(RESOURCE_NOT_FOUND, e); - return Collections.emptyList(); - } - Query query = sessionFactory.getCurrentSession().createQuery(queryString); - query.setInteger("visitId", visit.getId()); - query.setInteger("diagnosisOrderConceptId", diagnosisMetadata.getDiagnosisOrderConcept().getId()); - query.setInteger("primaryOrderConceptId", diagnosisMetadata.getConceptFor(Diagnosis.Order.PRIMARY).getId()); - query.setInteger("diagnosisCertaintyConceptId", diagnosisMetadata.getDiagnosisCertaintyConcept().getId()); - query.setInteger("confirmedCertaintyConceptId", diagnosisMetadata.getConceptFor(Diagnosis.Certainty.CONFIRMED).getId()); - return (List) query.list(); + List confirmedDiagnoses = getConfirmedDiagnoses(visit, diagnosisMetadata); + List primaryDiagnoses = getPrimaryDiagnoses(visit, diagnosisMetadata); + confirmedDiagnoses.retainAll(primaryDiagnoses); + return confirmedDiagnoses; } @Override diff --git a/api/src/main/java/org/openmrs/module/emrapi/diagnosis/CoreDiagnosisService.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/CoreDiagnosisService.java new file mode 100644 index 000000000..d40f01f6c --- /dev/null +++ b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/CoreDiagnosisService.java @@ -0,0 +1,52 @@ +package org.openmrs.module.emrapi.diagnosis; + +import org.openmrs.Encounter; +import org.openmrs.Obs; +import org.openmrs.Patient; +import org.openmrs.Visit; +import org.openmrs.api.context.Context; + +import java.util.ArrayList; +import java.util.Date; +import java.util.List; + +/** + * class implementing the DiagnosisService while delegating calls to the core module + * */ +public class CoreDiagnosisService { + + private EmrDiagnosisDAO emrDiagnosisDAO; + + public void setEmrDiagnosisDAO(EmrDiagnosisDAO emrDiagnosisDAO) { + this.emrDiagnosisDAO = emrDiagnosisDAO; + } + + public List getDiagnoses(Patient patient, Date fromDate) { + return DiagnosisUtils.convert(Context.getDiagnosisService().getDiagnoses(patient, fromDate)); + } + + public List getUniqueDiagnoses(Patient patient, Date fromDate){ + return DiagnosisUtils.convert(Context.getDiagnosisService().getUniqueDiagnoses(patient, fromDate)); + } + + public List getPrimaryDiagnoses(Encounter encounter){ + return DiagnosisUtils.convert(Context.getDiagnosisService().getPrimaryDiagnoses(encounter)); + } + + public boolean hasDiagnosis(Encounter encounter, Diagnosis diagnosis){ + return true; + } + + public List codeNonCodedDiagnosis(Obs nonCodedObs, List diagnoses){ + return null; + } + + public List getDiagnosesAsObs(Visit visit, DiagnosisMetadata diagnosisMetadata, Boolean primaryOnly, Boolean confirmedOnly) { + List diagnoses = emrDiagnosisDAO.getDiagnoses(visit, primaryOnly, confirmedOnly); + List diagnosisList = new ArrayList(); + for (Diagnosis diagnosis : DiagnosisUtils.convert(diagnoses)) { + diagnosisList.add(diagnosisMetadata.buildDiagnosisObsGroup(diagnosis)); + } + return diagnosisList; + } +} diff --git a/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisService.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisService.java index eb57c7458..6cb6489e7 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisService.java +++ b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisService.java @@ -3,6 +3,7 @@ import org.openmrs.Encounter; import org.openmrs.Obs; import org.openmrs.Patient; +import org.openmrs.Visit; import org.openmrs.api.OpenmrsService; @@ -60,4 +61,9 @@ public interface DiagnosisService extends OpenmrsService { * @return the list of diagnoses */ List getUniqueDiagnoses(Patient patient, Date fromDate); + + /** + * @return diagnoses as obs, for the given metadata and primary/confirmed specification + */ + List getDiagnosesAsObs(Visit visit, DiagnosisMetadata diagnosisMetadata, Boolean primaryOnly, Boolean confirmedOnly); } diff --git a/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceImpl.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceImpl.java index d1a9c3306..bf353ddcf 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceImpl.java +++ b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceImpl.java @@ -1,200 +1,96 @@ package org.openmrs.module.emrapi.diagnosis; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.openmrs.Concept; import org.openmrs.Encounter; import org.openmrs.Obs; import org.openmrs.Patient; -import org.openmrs.Person; -import org.openmrs.api.EncounterService; -import org.openmrs.api.ObsService; +import org.openmrs.Visit; +import org.openmrs.api.AdministrationService; import org.openmrs.api.impl.BaseOpenmrsService; -import org.openmrs.module.emrapi.EmrApiProperties; +import org.openmrs.module.emrapi.EmrApiConstants; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; import java.util.Date; -import java.util.HashSet; -import java.util.Iterator; import java.util.List; -import java.util.Set; /** - * @deprecated as of 1.25.0, replaced by {@link DiagnosisServiceImpl} in the openmrs core platform 2.2.0 - */ -@Deprecated + * class implementing the DiagnosisService while delegating calls to the core module + * */ public class DiagnosisServiceImpl extends BaseOpenmrsService implements DiagnosisService { - private static final Log log = LogFactory.getLog(DiagnosisService.class); + private CoreDiagnosisService coreDiagnosisService; - private EmrApiProperties emrApiProperties; + private ObsGroupDiagnosisService obsGroupDiagnosisService; - private ObsService obsService; + private AdministrationService adminService; - private EncounterService encounterService; + public void setCoreDiagnosisService(CoreDiagnosisService coreDiagnosisService) { + this.coreDiagnosisService = coreDiagnosisService; + } + + public void setObsGroupDiagnosisService(ObsGroupDiagnosisService obsGroupDiagnosisService) { + this.obsGroupDiagnosisService = obsGroupDiagnosisService; + } - public void setEmrApiProperties(EmrApiProperties emrApiProperties) { - this.emrApiProperties = emrApiProperties; + public void setAdminService(AdministrationService adminService) { + this.adminService = adminService; } - public void setObsService(ObsService obsService) { - this.obsService = obsService; + protected boolean useDiagnosesAsObs() { + return adminService.getGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "false").equalsIgnoreCase("true"); } - public void setEncounterService(EncounterService encounterService) { - this.encounterService = encounterService; - } - - @Override - public List codeNonCodedDiagnosis(Obs nonCodedObs, List diagnoses) { - - List newDiagnoses = null; - if ( (nonCodedObs != null) && (diagnoses != null && diagnoses.size() > 0) ){ - newDiagnoses = new ArrayList(); - - Obs obsGroup = nonCodedObs.getObsGroup(); - if ( obsGroup != null ){ - Set groupMembers = obsGroup.getGroupMembers(); - if( (groupMembers!=null) && (groupMembers.size() > 0) ){ - for (Obs groupMember : groupMembers) { - obsService.voidObs(groupMember, "code a diagnosis"); - } - } - obsGroup = obsService.voidObs(obsGroup, "code a diagnosis"); - } - - Encounter encounter = nonCodedObs.getEncounter(); - List primaryDiagnoses = getPrimaryDiagnoses(encounter); - boolean havePrimary =false; - if (primaryDiagnoses !=null && primaryDiagnoses.size() > 0 ){ - // the encounter already has a primary diagnosis - havePrimary = true; - } - DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); - for(Diagnosis diagnosis : diagnoses){ - if (hasDiagnosis(encounter, diagnosis)){ - // if this encounter already has this diagnosis skip it - continue; - } - if (havePrimary) { - diagnosis.setOrder(Diagnosis.Order.SECONDARY); - } - Obs obs = diagnosisMetadata.buildDiagnosisObsGroup(diagnosis); - if (obs != null) { - newDiagnoses.add(obs); - encounter.addObs(obs); - } - - } - encounterService.saveEncounter(encounter); - } - return newDiagnoses; - } - - @Override - public List getPrimaryDiagnoses(Encounter encounter) { - List diagnoses = null; - if (encounter != null && !encounter.isVoided()){ - DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); - diagnoses = new ArrayList(); - for (Obs obs : encounter.getObsAtTopLevel(false) ){ - if (diagnosisMetadata.isDiagnosis(obs)) { - try { - Diagnosis diagnosis = diagnosisMetadata.toDiagnosis(obs); - if (Diagnosis.Order.PRIMARY == diagnosis.getOrder()) { - diagnoses.add(diagnosis); - } - } catch (Exception ex){ - log.warn("malformed diagnosis obs group with obsId " + obs.getObsId(), ex); - } - } - } - } - return diagnoses; - - } - - @Override - public boolean hasDiagnosis(Encounter encounter, Diagnosis diagnosis) { - boolean hasDiagnosis = false; - if (encounter != null && !encounter.isVoided()){ - DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); - for (Obs obs : encounter.getObsAtTopLevel(false) ){ - if (diagnosisMetadata.isDiagnosis(obs)) { - try { - Diagnosis existing = diagnosisMetadata.toDiagnosis(obs); - CodedOrFreeTextAnswer answer = existing.getDiagnosis(); - if (answer != null && answer.equals(diagnosis.getDiagnosis())){ - hasDiagnosis = true; - break; - } - } catch (Exception ex){ - log.warn("malformed diagnosis obs group with obsId " + obs.getObsId(), ex); - } - } - } - } - return hasDiagnosis; - - } - - @Override public List getDiagnoses(Patient patient, Date fromDate) { - List diagnoses = new ArrayList(); - - DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); - - List observations = obsService.getObservations(Arrays.asList((Person) patient), null, Arrays.asList(diagnosisMetadata.getDiagnosisSetConcept()), - null, null, null, Arrays.asList("obsDatetime"), - null, null, fromDate, null, false); - - for (Obs obs : observations) { - Diagnosis diagnosis; - try { - diagnosis = diagnosisMetadata.toDiagnosis(obs); - } - catch (Exception ex) { - log.warn("Error trying to interpret " + obs + " as a diagnosis"); - if (log.isDebugEnabled()) { - log.debug("Detailed error", ex); - } - continue; - } - - Collection nonDiagnosisConcepts = emrApiProperties.getSuppressedDiagnosisConcepts(); - Collection nonDiagnosisConceptSets = emrApiProperties.getNonDiagnosisConceptSets(); - - Set filter = new HashSet(); - filter.addAll(nonDiagnosisConcepts); - for (Concept conceptSet : nonDiagnosisConceptSets) { - filter.addAll(conceptSet.getSetMembers()); - } - - if (!filter.contains(diagnosis.getDiagnosis().getCodedAnswer())) { - diagnoses.add(diagnosis); - } + if (useDiagnosesAsObs()) { + return obsGroupDiagnosisService.getDiagnoses(patient, fromDate); + } + else { + return coreDiagnosisService.getDiagnoses(patient, fromDate); } - - return diagnoses; } - @Override - public List getUniqueDiagnoses(Patient patient, Date fromDate) { - List diagnoses = getDiagnoses(patient, fromDate); + public List getUniqueDiagnoses(Patient patient, Date fromDate) { + if (useDiagnosesAsObs()) { + return obsGroupDiagnosisService.getUniqueDiagnoses(patient, fromDate); + } + else { + return coreDiagnosisService.getUniqueDiagnoses(patient, fromDate); + } - Set answers = new HashSet(); + } + + public List getPrimaryDiagnoses(Encounter encounter) { + if (useDiagnosesAsObs()) { + return obsGroupDiagnosisService.getPrimaryDiagnoses(encounter); + } + else { + return coreDiagnosisService.getPrimaryDiagnoses(encounter); + } + } - Iterator it = diagnoses.iterator(); - while(it.hasNext()) { - Diagnosis diagnosis = it.next(); + public boolean hasDiagnosis(Encounter encounter, Diagnosis diagnosis) { + if (useDiagnosesAsObs()) { + return obsGroupDiagnosisService.hasDiagnosis(encounter, diagnosis); + } + else { + return coreDiagnosisService.hasDiagnosis(encounter, diagnosis); + } + } - if (!answers.add(diagnosis.getDiagnosis())) { - it.remove(); - } + public List codeNonCodedDiagnosis(Obs nonCodedObs, List diagnoses) { + if (useDiagnosesAsObs()) { + return obsGroupDiagnosisService.codeNonCodedDiagnosis(nonCodedObs, diagnoses); } + else { + return coreDiagnosisService.codeNonCodedDiagnosis(nonCodedObs, diagnoses); + } + } - return diagnoses; + public List getDiagnosesAsObs(Visit visit, DiagnosisMetadata diagnosisMetadata, Boolean primaryOnly, Boolean confirmedOnly) { + if (useDiagnosesAsObs()) { + return obsGroupDiagnosisService.getDiagnosesAsObs(visit, diagnosisMetadata, primaryOnly, confirmedOnly); + } + else { + return coreDiagnosisService.getDiagnosesAsObs(visit, diagnosisMetadata, primaryOnly, confirmedOnly); + } } + } diff --git a/api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisUtils.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisUtils.java similarity index 100% rename from api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisUtils.java rename to api/src/main/java/org/openmrs/module/emrapi/diagnosis/DiagnosisUtils.java diff --git a/api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAO.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAO.java similarity index 100% rename from api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAO.java rename to api/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAO.java diff --git a/api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOImpl2_2.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOImpl.java similarity index 96% rename from api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOImpl2_2.java rename to api/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOImpl.java index a522b17c6..df0dd38fe 100644 --- a/api-2.2/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOImpl2_2.java +++ b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOImpl.java @@ -9,7 +9,7 @@ /** * Hibernate implementation of the EmrDiagnosisDAO */ -public class EmrDiagnosisDAOImpl2_2 implements EmrDiagnosisDAO { +public class EmrDiagnosisDAOImpl implements EmrDiagnosisDAO { // TODO: Fetching diagnosis should be delegated to core Diagnosis service. // https://issues.openmrs.org/browse/TRUNK-5999 diff --git a/api-2.2/src/main/java/openmrs/module/emrapi/diagnosis/MigrateDiagnosis.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/MigrateDiagnosis.java similarity index 77% rename from api-2.2/src/main/java/openmrs/module/emrapi/diagnosis/MigrateDiagnosis.java rename to api/src/main/java/org/openmrs/module/emrapi/diagnosis/MigrateDiagnosis.java index 7dfcfe546..a730bcf10 100644 --- a/api-2.2/src/main/java/openmrs/module/emrapi/diagnosis/MigrateDiagnosis.java +++ b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/MigrateDiagnosis.java @@ -7,21 +7,16 @@ * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS * graphic logo is a trademark of OpenMRS Inc. */ -package openmrs.module.emrapi.diagnosis; +package org.openmrs.module.emrapi.diagnosis; -import java.util.ArrayList; -import java.util.List; import org.openmrs.CodedOrFreeText; import org.openmrs.ConditionVerificationStatus; import org.openmrs.Obs; import org.openmrs.Patient; import org.openmrs.api.context.Context; -import org.openmrs.module.emrapi.EmrApiProperties; -import org.openmrs.module.emrapi.diagnosis.Diagnosis; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; -import org.openmrs.module.emrapi.diagnosis.DiagnosisService; -import org.openmrs.module.emrapi.diagnosis.DiagnosisServiceImpl; -import org.openmrs.module.emrapi.visit.EmrVisitService; + +import java.util.ArrayList; +import java.util.List; /** * Migrates existing Diagnosis from the obs table to the new encounter_diagnosis table by getting all existing diagnosis @@ -36,12 +31,11 @@ public class MigrateDiagnosis { public Boolean migrate(DiagnosisMetadata diagnosisMetadata) { // Flag that identifies whether atleast one Diagnosis was migrated Boolean migratedAtleastOneEncounterDiagosis = false; - - EmrVisitService emrVisitService = Context.getService(EmrVisitService.class); - DiagnosisService oldDiagnosisService = getDeprecatedDiagnosisService(); + + ObsGroupDiagnosisService oldDiagnosisService = getDeprecatedDiagnosisService(); org.openmrs.api.DiagnosisService newDiagnosisService = Context.getService(org.openmrs.api.DiagnosisService.class); - List patientsIds = emrVisitService.getAllPatientsWithDiagnosis(diagnosisMetadata); + List patientsIds = oldDiagnosisService.getAllPatientsWithDiagnosis(diagnosisMetadata); for (int id : patientsIds) { Patient patient = Context.getPatientService().getPatient(id); @@ -103,11 +97,7 @@ private List convert(List emrapiDiagnoses) { * * @return the deprecated diagnosis service */ - public static DiagnosisService getDeprecatedDiagnosisService() { - DiagnosisService oldDiagnosisService = new DiagnosisServiceImpl(); - ((DiagnosisServiceImpl)oldDiagnosisService).setEncounterService(Context.getEncounterService()); - ((DiagnosisServiceImpl)oldDiagnosisService).setObsService(Context.getObsService()); - ((DiagnosisServiceImpl)oldDiagnosisService).setEmrApiProperties(Context.getRegisteredComponent("emrApiProperties", EmrApiProperties.class)); - return oldDiagnosisService; + public static ObsGroupDiagnosisService getDeprecatedDiagnosisService() { + return Context.getRegisteredComponent("obsGroupDiagnosisService", ObsGroupDiagnosisService.class); } } diff --git a/api/src/main/java/org/openmrs/module/emrapi/diagnosis/ObsGroupDiagnosisService.java b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/ObsGroupDiagnosisService.java new file mode 100644 index 000000000..bcba2f3b2 --- /dev/null +++ b/api/src/main/java/org/openmrs/module/emrapi/diagnosis/ObsGroupDiagnosisService.java @@ -0,0 +1,218 @@ +package org.openmrs.module.emrapi.diagnosis; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.openmrs.Concept; +import org.openmrs.Encounter; +import org.openmrs.Obs; +import org.openmrs.Patient; +import org.openmrs.Person; +import org.openmrs.Visit; +import org.openmrs.api.EncounterService; +import org.openmrs.api.ObsService; +import org.openmrs.module.emrapi.EmrApiProperties; +import org.openmrs.module.emrapi.db.EmrVisitDAO; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.Date; +import java.util.HashSet; +import java.util.Iterator; +import java.util.List; +import java.util.Set; + +public class ObsGroupDiagnosisService { + + private static final Log log = LogFactory.getLog(DiagnosisService.class); + + private EmrApiProperties emrApiProperties; + + private ObsService obsService; + + private EncounterService encounterService; + + private EmrVisitDAO emrVisitDAO; + + public void setEmrApiProperties(EmrApiProperties emrApiProperties) { + this.emrApiProperties = emrApiProperties; + } + + public void setObsService(ObsService obsService) { + this.obsService = obsService; + } + + public void setEncounterService(EncounterService encounterService) { + this.encounterService = encounterService; + } + + public void setEmrVisitDAO(EmrVisitDAO emrVisitDAO) { + this.emrVisitDAO = emrVisitDAO; + } + + public List codeNonCodedDiagnosis(Obs nonCodedObs, List diagnoses) { + + List newDiagnoses = null; + if ( (nonCodedObs != null) && (diagnoses != null && diagnoses.size() > 0) ){ + newDiagnoses = new ArrayList(); + + Obs obsGroup = nonCodedObs.getObsGroup(); + if ( obsGroup != null ){ + Set groupMembers = obsGroup.getGroupMembers(); + if( (groupMembers!=null) && (groupMembers.size() > 0) ){ + for (Obs groupMember : groupMembers) { + obsService.voidObs(groupMember, "code a diagnosis"); + } + } + obsGroup = obsService.voidObs(obsGroup, "code a diagnosis"); + } + + Encounter encounter = nonCodedObs.getEncounter(); + List primaryDiagnoses = getPrimaryDiagnoses(encounter); + boolean havePrimary =false; + if (primaryDiagnoses !=null && primaryDiagnoses.size() > 0 ){ + // the encounter already has a primary diagnosis + havePrimary = true; + } + DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); + for(Diagnosis diagnosis : diagnoses){ + if (hasDiagnosis(encounter, diagnosis)){ + // if this encounter already has this diagnosis skip it + continue; + } + if (havePrimary) { + diagnosis.setOrder(Diagnosis.Order.SECONDARY); + } + Obs obs = diagnosisMetadata.buildDiagnosisObsGroup(diagnosis); + if (obs != null) { + newDiagnoses.add(obs); + encounter.addObs(obs); + } + + } + encounterService.saveEncounter(encounter); + } + return newDiagnoses; + } + + public List getPrimaryDiagnoses(Encounter encounter) { + List diagnoses = null; + if (encounter != null && !encounter.isVoided()){ + DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); + diagnoses = new ArrayList(); + for (Obs obs : encounter.getObsAtTopLevel(false) ){ + if (diagnosisMetadata.isDiagnosis(obs)) { + try { + Diagnosis diagnosis = diagnosisMetadata.toDiagnosis(obs); + if (Diagnosis.Order.PRIMARY == diagnosis.getOrder()) { + diagnoses.add(diagnosis); + } + } catch (Exception ex){ + log.warn("malformed diagnosis obs group with obsId " + obs.getObsId(), ex); + } + } + } + } + return diagnoses; + + } + + public boolean hasDiagnosis(Encounter encounter, Diagnosis diagnosis) { + boolean hasDiagnosis = false; + if (encounter != null && !encounter.isVoided()){ + DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); + for (Obs obs : encounter.getObsAtTopLevel(false) ){ + if (diagnosisMetadata.isDiagnosis(obs)) { + try { + Diagnosis existing = diagnosisMetadata.toDiagnosis(obs); + CodedOrFreeTextAnswer answer = existing.getDiagnosis(); + if (answer != null && answer.equals(diagnosis.getDiagnosis())){ + hasDiagnosis = true; + break; + } + } catch (Exception ex){ + log.warn("malformed diagnosis obs group with obsId " + obs.getObsId(), ex); + } + } + } + } + return hasDiagnosis; + + } + + public List getDiagnoses(Patient patient, Date fromDate) { + List diagnoses = new ArrayList(); + + DiagnosisMetadata diagnosisMetadata = emrApiProperties.getDiagnosisMetadata(); + + List observations = obsService.getObservations(Arrays.asList((Person) patient), null, Arrays.asList(diagnosisMetadata.getDiagnosisSetConcept()), + null, null, null, Arrays.asList("obsDatetime"), + null, null, fromDate, null, false); + + for (Obs obs : observations) { + Diagnosis diagnosis; + try { + diagnosis = diagnosisMetadata.toDiagnosis(obs); + } + catch (Exception ex) { + log.warn("Error trying to interpret " + obs + " as a diagnosis"); + if (log.isDebugEnabled()) { + log.debug("Detailed error", ex); + } + continue; + } + + Collection nonDiagnosisConcepts = emrApiProperties.getSuppressedDiagnosisConcepts(); + Collection nonDiagnosisConceptSets = emrApiProperties.getNonDiagnosisConceptSets(); + + Set filter = new HashSet(); + filter.addAll(nonDiagnosisConcepts); + for (Concept conceptSet : nonDiagnosisConceptSets) { + filter.addAll(conceptSet.getSetMembers()); + } + + if (!filter.contains(diagnosis.getDiagnosis().getCodedAnswer())) { + diagnoses.add(diagnosis); + } + } + + return diagnoses; + } + + public List getUniqueDiagnoses(Patient patient, Date fromDate) { + List diagnoses = getDiagnoses(patient, fromDate); + + Set answers = new HashSet(); + + Iterator it = diagnoses.iterator(); + while(it.hasNext()) { + Diagnosis diagnosis = it.next(); + + if (!answers.add(diagnosis.getDiagnosis())) { + it.remove(); + } + } + + return diagnoses; + } + + public List getDiagnosesAsObs(Visit visit, DiagnosisMetadata diagnosisMetadata, Boolean primaryOnly, Boolean confirmedOnly) { + if (primaryOnly == true) { + if (confirmedOnly == false) { + return emrVisitDAO.getPrimaryDiagnoses(visit, diagnosisMetadata); + } else { + return emrVisitDAO.getConfirmedPrimaryDiagnoses(visit, diagnosisMetadata); + } + } else { + if (confirmedOnly == false) { + return emrVisitDAO.getDiagnoses(visit, diagnosisMetadata); + } else { + return emrVisitDAO.getConfirmedDiagnoses(visit, diagnosisMetadata); + } + } + } + + public List getAllPatientsWithDiagnosis(DiagnosisMetadata diagnosisMetadata) { + return emrVisitDAO.getAllPatientsWithDiagnosis(diagnosisMetadata); + } +} diff --git a/api/src/main/java/org/openmrs/module/emrapi/disposition/Disposition.java b/api/src/main/java/org/openmrs/module/emrapi/disposition/Disposition.java index 646a291c3..de93b4d78 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/disposition/Disposition.java +++ b/api/src/main/java/org/openmrs/module/emrapi/disposition/Disposition.java @@ -2,7 +2,7 @@ import org.codehaus.jackson.annotate.JsonProperty; -import org.openmrs.module.emrapi.CareSettingType; +import org.openmrs.CareSetting; import java.util.List; @@ -30,7 +30,7 @@ public class Disposition { private DispositionType type; @JsonProperty - private List careSettingTypes; + private List careSettingTypes; @JsonProperty private List encounterTypes; @@ -119,11 +119,11 @@ public void setType(DispositionType type) { this.type = type; } - public List getCareSettingTypes() { + public List getCareSettingTypes() { return careSettingTypes; } - public void setCareSettingTypes(List careSettingTypes) { + public void setCareSettingTypes(List careSettingTypes) { this.careSettingTypes = careSettingTypes; } diff --git a/api/src/main/java/org/openmrs/module/emrapi/disposition/DispositionServiceImpl.java b/api/src/main/java/org/openmrs/module/emrapi/disposition/DispositionServiceImpl.java index 6231c4ca2..324c22f38 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/disposition/DispositionServiceImpl.java +++ b/api/src/main/java/org/openmrs/module/emrapi/disposition/DispositionServiceImpl.java @@ -2,11 +2,11 @@ import org.codehaus.jackson.map.ObjectMapper; import org.codehaus.jackson.type.TypeReference; +import org.openmrs.CareSetting; import org.openmrs.EncounterType; import org.openmrs.Obs; import org.openmrs.api.ConceptService; import org.openmrs.api.impl.BaseOpenmrsService; -import org.openmrs.module.emrapi.CareSettingType; import org.openmrs.module.emrapi.concept.EmrConceptService; import org.openmrs.module.emrapi.descriptor.MissingConceptException; import org.openmrs.module.emrapi.visit.VisitDomainWrapper; @@ -99,11 +99,11 @@ public List getValidDispositions(VisitDomainWrapper visitDomainWrap boolean isAdmitted = visitDomainWrapper.isAdmitted(); for (Disposition candidate : getDispositions()) { - List careSettingTypes = candidate.getCareSettingTypes(); + List careSettingTypes = candidate.getCareSettingTypes(); if (careSettingTypes == null - || (isAdmitted && careSettingTypes.contains(CareSettingType.INPATIENT)) - || (!isAdmitted && careSettingTypes.contains(CareSettingType.OUTPATIENT)) ) { + || (isAdmitted && careSettingTypes.contains(CareSetting.CareSettingType.INPATIENT)) + || (!isAdmitted && careSettingTypes.contains(CareSetting.CareSettingType.OUTPATIENT)) ) { dispositions.add(candidate); } } diff --git a/api/src/main/java/org/openmrs/module/emrapi/encounter/DefaultOrderServiceImpl.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/DefaultOrderServiceImpl.java deleted file mode 100644 index 4a6218c61..000000000 --- a/api/src/main/java/org/openmrs/module/emrapi/encounter/DefaultOrderServiceImpl.java +++ /dev/null @@ -1,34 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.encounter; - -import org.openmrs.Encounter; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.springframework.stereotype.Component; - -import java.util.List; - -@Component(value = "emrOrderService") -@OpenmrsProfile(openmrsPlatformVersion = "1.9.*") -public class DefaultOrderServiceImpl implements EmrOrderService{ - - @Override - public void save(List drugOrders, Encounter encounter) { - } - - @Override - public void saveOrders(List orders, Encounter encounter) { - } -} diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_12.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl.java similarity index 77% rename from api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_12.java rename to api/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl.java index 1fdf89892..fa9292b4f 100644 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_12.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl.java @@ -18,35 +18,30 @@ import org.openmrs.Encounter; import org.openmrs.Order; import org.openmrs.OrderGroup; -import org.openmrs.annotation.OpenmrsProfile; import org.openmrs.api.EncounterService; import org.openmrs.api.OrderSetService; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import org.openmrs.module.emrapi.encounter.mapper.OpenMRSDrugOrderMapper; import org.openmrs.module.emrapi.encounter.mapper.OpenMRSOrderGroupMapper; import org.openmrs.module.emrapi.encounter.mapper.OpenMRSOrderMapper; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Service; +import org.springframework.transaction.annotation.Transactional; import java.util.LinkedHashSet; import java.util.List; import java.util.Set; -import java.util.TreeSet; -@Service(value = "emrOrderService") -@OpenmrsProfile(openmrsPlatformVersion = "1.12.0 - 2.*") -public class EmrOrderServiceImpl_1_12 implements EmrOrderService { +@Transactional +public class EmrOrderServiceImpl implements EmrOrderService { - private final EncounterService encounterService; - private final OpenMRSDrugOrderMapper openMRSDrugOrderMapper; - private final OpenMRSOrderMapper openMRSOrderMapper; - private final OrderSetService orderSetService; - private final OpenMRSOrderGroupMapper openMRSOrderGroupMapper; + private EncounterService encounterService; + private OpenMRSDrugOrderMapper openMRSDrugOrderMapper; + private OpenMRSOrderMapper openMRSOrderMapper; + private OrderSetService orderSetService; + private OpenMRSOrderGroupMapper openMRSOrderGroupMapper; - @Autowired - public EmrOrderServiceImpl_1_12(OpenMRSDrugOrderMapper openMRSDrugOrderMapper, EncounterService encounterService, - OpenMRSOrderMapper openMRSOrderMapper, OrderSetService orderSetService, - OpenMRSOrderGroupMapper openMRSOrderGroupMapper) { + public EmrOrderServiceImpl(OpenMRSDrugOrderMapper openMRSDrugOrderMapper, EncounterService encounterService, + OpenMRSOrderMapper openMRSOrderMapper, OrderSetService orderSetService, + OpenMRSOrderGroupMapper openMRSOrderGroupMapper) { this.openMRSDrugOrderMapper = openMRSDrugOrderMapper; this.encounterService = encounterService; this.openMRSOrderMapper = openMRSOrderMapper; diff --git a/api/src/main/java/org/openmrs/module/emrapi/encounter/ObservationMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/ObservationMapper.java index 32a661704..ac7ca8df4 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/encounter/ObservationMapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/ObservationMapper.java @@ -16,23 +16,18 @@ import org.openmrs.Concept; import org.openmrs.Drug; import org.openmrs.Obs; -import org.openmrs.annotation.OpenmrsProfile; import org.openmrs.api.context.Context; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import org.openmrs.module.emrapi.encounter.mapper.UserMapper; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; import java.text.SimpleDateFormat; -@Component("observationMapper") -@OpenmrsProfile(openmrsPlatformVersion = "[1.9.* - 1.11.*]") public class ObservationMapper { - private ConceptMapper conceptMapper; - private DrugMapper drugMapper; - private UserMapper userMapper; - @Autowired(required = false) + private final ConceptMapper conceptMapper; + private final DrugMapper drugMapper; + private final UserMapper userMapper; + public ObservationMapper(ConceptMapper conceptMapper, DrugMapper drugMapper, UserMapper userMapper) { this.conceptMapper = conceptMapper; this.drugMapper = drugMapper; @@ -59,6 +54,18 @@ public EncounterTransaction.Observation map(Obs obs) { observation.addGroupMember(map(obsGroupMember)); } } + observation.setFormNamespace(obs.getFormFieldNamespace()); + observation.setFormFieldPath(obs.getFormFieldPath()); + + Obs.Interpretation obsInterpretation = obs.getInterpretation(); + Obs.Status obsStatus = obs.getStatus(); + + String interpretation = (obsInterpretation != null) ? obsInterpretation.name() : null; + String status = (obsStatus != null) ? obsStatus.name() : null; + + observation.setInterpretation(interpretation); + observation.setStatus(status); + return observation; } diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/OrderMetadataService.java similarity index 98% rename from api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java rename to api/src/main/java/org/openmrs/module/emrapi/encounter/OrderMetadataService.java index 32b008bbc..94b5d601e 100644 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataService.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/OrderMetadataService.java @@ -11,7 +11,7 @@ * * Copyright (C) OpenMRS, LLC. All Rights Reserved. */ -package org.openmrs.module.emrapi.encounter.service; +package org.openmrs.module.emrapi.encounter; import org.openmrs.Concept; import org.openmrs.OrderFrequency; diff --git a/api/src/main/java/org/openmrs/module/emrapi/encounter/domain/EncounterTransaction.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/domain/EncounterTransaction.java index c9519b058..0a3a84790 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/encounter/domain/EncounterTransaction.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/domain/EncounterTransaction.java @@ -16,8 +16,8 @@ import org.codehaus.jackson.annotate.JsonIgnore; import org.codehaus.jackson.annotate.JsonIgnoreProperties; import org.codehaus.jackson.map.annotate.JsonSerialize; +import org.openmrs.CareSetting; import org.openmrs.ConceptMap; -import org.openmrs.module.emrapi.CareSettingType; import org.openmrs.module.emrapi.utils.CustomJsonDateSerializer; import java.util.ArrayList; @@ -638,7 +638,7 @@ public static class Order { private Date dateChanged; private Date dateStopped; private String orderNumber; - private CareSettingType careSetting; + private CareSetting.CareSettingType careSetting; private String action; private String commentToFulfiller; private Date autoExpireDate; @@ -748,11 +748,11 @@ public String getOrderNumber() { return orderNumber; } - public void setCareSetting(CareSettingType careSetting) { + public void setCareSetting(CareSetting.CareSettingType careSetting) { this.careSetting = careSetting; } - public CareSettingType getCareSetting() { + public CareSetting.CareSettingType getCareSetting() { return careSetting; } diff --git a/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultDrugMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultDrugMapper.java index 751fa4bce..464d65b71 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultDrugMapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultDrugMapper.java @@ -1,16 +1,22 @@ package org.openmrs.module.emrapi.encounter.mapper; import org.openmrs.Drug; -import org.openmrs.annotation.OpenmrsProfile; import org.openmrs.module.emrapi.encounter.DrugMapper; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import org.springframework.stereotype.Component; @Component("drugMapper") -@OpenmrsProfile(openmrsPlatformVersion = "1.9.*") public class DefaultDrugMapper implements DrugMapper { + @Override - public EncounterTransaction.Drug map(Drug drug) { - return null; + public EncounterTransaction.Drug map(Drug drug){ + EncounterTransaction.Drug encounterTransactionDrug = new EncounterTransaction.Drug(); + encounterTransactionDrug.setName(drug.getDisplayName()); + if (drug.getDosageForm() != null) { + encounterTransactionDrug.setForm(drug.getDosageForm().getName().getName()); + } + encounterTransactionDrug.setStrength(drug.getStrength()); + encounterTransactionDrug.setUuid(drug.getUuid()); + return encounterTransactionDrug; } } diff --git a/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultOrderMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultOrderMapper.java index e5f58f5fb..c73e82939 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultOrderMapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DefaultOrderMapper.java @@ -13,36 +13,159 @@ */ package org.openmrs.module.emrapi.encounter.mapper; +import org.apache.commons.lang3.StringUtils; +import org.openmrs.CareSetting; +import org.openmrs.Concept; import org.openmrs.DrugOrder; import org.openmrs.Encounter; import org.openmrs.Order; -import org.openmrs.annotation.OpenmrsProfile; +import org.openmrs.OrderGroup; +import org.openmrs.api.db.hibernate.HibernateUtil; +import org.openmrs.module.emrapi.encounter.ConceptMapper; import org.openmrs.module.emrapi.encounter.OrderMapper; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import org.springframework.stereotype.Component; +import java.util.ArrayList; +import java.util.Collections; +import java.util.Comparator; import java.util.List; -@Component -@OpenmrsProfile(openmrsPlatformVersion = "1.9.*") -public class DefaultOrderMapper implements OrderMapper{ +@Component("orderMapper") +public class DefaultOrderMapper implements OrderMapper { + + private final ConceptMapper conceptMapper = new ConceptMapper(); + @Override public List mapDrugOrders(Encounter encounter) { - return null; + + List orders = new ArrayList(); + for (Order order : encounter.getOrders()) { + order = HibernateUtil.getRealObjectFromProxy(order); + if (DrugOrder.class.equals(order.getClass())) { + orders.add(mapDrugOrder((DrugOrder) order)); + } + } + sortByOrderNumber(orders); + return orders; + } + + private void sortByOrderNumber(List orders) { + Collections.sort(orders, new Comparator() { + @Override + public int compare(EncounterTransaction.DrugOrder drugOrder1, EncounterTransaction.DrugOrder drugOrder2) { + return drugOrder1.getOrderNumber().compareTo(drugOrder2.getOrderNumber()); + } + }); } @Override public List mapOrders(Encounter encounter) { - return null; + List orders = new ArrayList(); + for (Order order : encounter.getOrders()) { + order = HibernateUtil.getRealObjectFromProxy(order); + if (Order.class.equals(order.getClass())) { + orders.add(mapOrder(order)); + } + } + return orders; } @Override public EncounterTransaction.DrugOrder mapDrugOrder(DrugOrder openMRSDrugOrder) { - return null; + EncounterTransaction.DrugOrder drugOrder = new EncounterTransaction.DrugOrder(); + drugOrder.setUuid(openMRSDrugOrder.getUuid()); + if (openMRSDrugOrder.getCareSetting() != null) { + drugOrder.setCareSetting(CareSetting.CareSettingType.valueOf(openMRSDrugOrder.getCareSetting().getCareSettingType().toString())); + } + drugOrder.setAction(openMRSDrugOrder.getAction().name()); + drugOrder.setOrderType(openMRSDrugOrder.getOrderType().getName()); + + Order previousOrder = openMRSDrugOrder.getPreviousOrder(); + if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())) { + drugOrder.setPreviousOrderUuid(previousOrder.getUuid()); + } + + drugOrder.setDrugNonCoded(openMRSDrugOrder.getDrugNonCoded()); + if (openMRSDrugOrder.getDrug() != null){ + EncounterTransaction.Drug encounterTransactionDrug = new DefaultDrugMapper().map(openMRSDrugOrder.getDrug()); + drugOrder.setDrug(encounterTransactionDrug); + } + + drugOrder.setDosingInstructionType(openMRSDrugOrder.getDosingType().getName()); + drugOrder.setDuration(openMRSDrugOrder.getDuration()); + drugOrder.setDurationUnits(getConceptName(openMRSDrugOrder.getDurationUnits())); + + drugOrder.setConcept(conceptMapper.map(openMRSDrugOrder.getConcept())); + drugOrder.setScheduledDate(openMRSDrugOrder.getScheduledDate()); + drugOrder.setDateActivated(openMRSDrugOrder.getDateActivated()); + drugOrder.setEffectiveStartDate(openMRSDrugOrder.getEffectiveStartDate()); + drugOrder.setAutoExpireDate(openMRSDrugOrder.getAutoExpireDate()); + drugOrder.setEffectiveStopDate(openMRSDrugOrder.getEffectiveStopDate()); + + drugOrder.setDateStopped(openMRSDrugOrder.getDateStopped()); + + EncounterTransaction.DosingInstructions dosingInstructions = new EncounterTransaction.DosingInstructions(); + dosingInstructions.setDose(openMRSDrugOrder.getDose()); + dosingInstructions.setDoseUnits(getConceptName(openMRSDrugOrder.getDoseUnits())); + dosingInstructions.setRoute(getConceptName(openMRSDrugOrder.getRoute())); + dosingInstructions.setAsNeeded(openMRSDrugOrder.getAsNeeded()); + + if (openMRSDrugOrder.getFrequency() != null) { + dosingInstructions.setFrequency(openMRSDrugOrder.getFrequency().getName()); + } + if (openMRSDrugOrder.getQuantity() != null) { + dosingInstructions.setQuantity(openMRSDrugOrder.getQuantity()); + } + dosingInstructions.setQuantityUnits(getConceptName(openMRSDrugOrder.getQuantityUnits())); + dosingInstructions.setAdministrationInstructions(openMRSDrugOrder.getDosingInstructions()); + drugOrder.setDosingInstructions(dosingInstructions); + + drugOrder.setInstructions(openMRSDrugOrder.getInstructions()); + drugOrder.setCommentToFulfiller(openMRSDrugOrder.getCommentToFulfiller()); + + drugOrder.setVoided(openMRSDrugOrder.getVoided()); + drugOrder.setVoidReason(openMRSDrugOrder.getVoidReason()); + drugOrder.setOrderNumber(openMRSDrugOrder.getOrderNumber()); + + drugOrder.setOrderReasonConcept(conceptMapper.map(openMRSDrugOrder.getOrderReason())); + drugOrder.setOrderReasonText(openMRSDrugOrder.getOrderReasonNonCoded()); + OrderGroup openMRSOrderGroup = openMRSDrugOrder.getOrderGroup(); + if(openMRSOrderGroup != null) { + EncounterTransaction.OrderGroup orderGroup = new EncounterTransaction.OrderGroup(openMRSOrderGroup.getUuid()); + EncounterTransaction.OrderSet orderSet = new EncounterTransaction.OrderSet(openMRSOrderGroup.getOrderSet().getUuid()); + orderGroup.setOrderSet(orderSet); + drugOrder.setOrderGroup(orderGroup); + drugOrder.setSortWeight(openMRSDrugOrder.getSortWeight()); + } + return drugOrder; } @Override public EncounterTransaction.Order mapOrder(Order order) { + EncounterTransaction.Order emrOrder = new EncounterTransaction.Order(); + emrOrder.setUuid(order.getUuid()); + emrOrder.setConcept(conceptMapper.map(order.getConcept())); + emrOrder.setOrderType(order.getOrderType().getName()); + emrOrder.setInstructions(order.getInstructions()); + emrOrder.setDateCreated(order.getDateCreated()); + emrOrder.setDateChanged(order.getDateChanged()); + emrOrder.setDateStopped(order.getDateStopped()); + emrOrder.setOrderNumber(order.getOrderNumber()); + emrOrder.setCommentToFulfiller(order.getCommentToFulfiller()); + emrOrder.setAction(order.getAction().name()); + emrOrder.setUrgency(String.valueOf(order.getUrgency())); + Order previousOrder = order.getPreviousOrder(); + if (previousOrder != null && StringUtils.isNotBlank(previousOrder.getUuid())) { + emrOrder.setPreviousOrderUuid(previousOrder.getUuid()); + } + return emrOrder; + } + + private String getConceptName(Concept concept) { + if (concept != null) { + return concept.getName().getName(); + } return null; } } diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java similarity index 96% rename from api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java rename to api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java index 9def35fa5..8cc830c1a 100644 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapper.java @@ -17,7 +17,7 @@ import org.openmrs.DrugOrder; import org.openmrs.api.ConceptService; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; +import org.openmrs.module.emrapi.encounter.OrderMetadataService; public class DosingInstructionsMapper { private ConceptService conceptService; diff --git a/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper.java index 523a76b40..8a35b5542 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/ObsMapper.java @@ -10,15 +10,12 @@ import org.openmrs.Encounter; import org.openmrs.Obs; import org.openmrs.Order; -import org.openmrs.annotation.OpenmrsProfile; import org.openmrs.api.ConceptService; import org.openmrs.api.ObsService; import org.openmrs.api.OrderService; import org.openmrs.module.emrapi.EmrApiProperties; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import org.openmrs.module.emrapi.encounter.exception.ConceptNotFoundException; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; import java.text.ParseException; import java.util.Date; @@ -27,8 +24,6 @@ import static org.openmrs.module.emrapi.utils.GeneralUtils.getCurrentDateIfNull; -@Component("obsMapper") -@OpenmrsProfile(openmrsPlatformVersion = "[1.9.* - 1.10.*]") public class ObsMapper { private ConceptService conceptService; @@ -36,7 +31,6 @@ public class ObsMapper { private ObsService obsService; private OrderService orderService; - @Autowired public ObsMapper(ConceptService conceptService, EmrApiProperties emrApiProperties, ObsService obsService, OrderService orderService) { @@ -74,7 +68,8 @@ protected Obs newObservation(Encounter encounter,EncounterTransaction.Observatio observation.setPerson(encounter.getPatient()); observation.setObsDatetime(observationDateTime); setVoidedObs(observationData, observation); - + observation.setFormField(observationData.getFormNamespace(),observationData.getFormFieldPath()); + setInterpretationAndStatus(observation, observationData); return observation; } @@ -122,6 +117,14 @@ protected void mapObservationProperties(EncounterTransaction.Observation observa observation.setOrder(getOrderByUuid(observationData.getOrderUuid())); } observation.setObsDatetime(getCurrentDateIfNull(observationData.getObservationDateTime())); + setInterpretationAndStatus(observation, observationData); + } + + private void setInterpretationAndStatus(Obs obs, EncounterTransaction.Observation observationData) { + String interpretation = observationData.getInterpretation(); + obs.setInterpretation(interpretation == null ? null : Obs.Interpretation.valueOf(interpretation)); + String status = observationData.getStatus(); + obs.setStatus(status == null ? null : Obs.Status.valueOf(status)); } private String getUuidOfCodedObservationValue(Object codeObsVal) { diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java similarity index 98% rename from api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java rename to api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java index e74665bf2..321a331a4 100644 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper.java @@ -27,7 +27,7 @@ import org.openmrs.api.OrderService; import org.openmrs.api.context.Context; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; +import org.openmrs.module.emrapi.encounter.OrderMetadataService; import org.openmrs.util.LocaleUtility; import java.util.List; diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderGroupMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderGroupMapper.java similarity index 100% rename from api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderGroupMapper.java rename to api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderGroupMapper.java diff --git a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java similarity index 97% rename from api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java rename to api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java index 63caef180..fe522aac1 100644 --- a/api-1.12/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper.java @@ -12,6 +12,7 @@ package org.openmrs.module.emrapi.encounter.mapper; import org.apache.commons.lang3.StringUtils; +import org.openmrs.CareSetting; import org.openmrs.Concept; import org.openmrs.Encounter; import org.openmrs.EncounterProvider; @@ -20,7 +21,6 @@ import org.openmrs.api.APIException; import org.openmrs.api.ConceptService; import org.openmrs.api.OrderService; -import org.openmrs.module.emrapi.CareSettingType; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import java.util.Iterator; @@ -44,7 +44,7 @@ public Order map(EncounterTransaction.Order order, Encounter encounter) { Order openMRSOrder = createOrder(order); openMRSOrder.setUrgency(getOrderUrgency(order)); - openMRSOrder.setCareSetting(orderService.getCareSettingByName(CareSettingType.OUTPATIENT.toString())); + openMRSOrder.setCareSetting(orderService.getCareSettingByName(CareSetting.CareSettingType.OUTPATIENT.toString())); openMRSOrder.setEncounter(encounter); openMRSOrder.setAutoExpireDate(order.getAutoExpireDate()); openMRSOrder.setCommentToFulfiller(order.getCommentToFulfiller()); diff --git a/api/src/main/java/org/openmrs/module/emrapi/person/image/EmrPersonImageServiceImpl.java b/api/src/main/java/org/openmrs/module/emrapi/person/image/EmrPersonImageServiceImpl.java index 1a85aa734..9323c7622 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/person/image/EmrPersonImageServiceImpl.java +++ b/api/src/main/java/org/openmrs/module/emrapi/person/image/EmrPersonImageServiceImpl.java @@ -22,10 +22,10 @@ import org.openmrs.module.emrapi.EmrApiProperties; import javax.imageio.ImageIO; -import javax.xml.bind.DatatypeConverter; import java.awt.image.BufferedImage; import java.io.ByteArrayInputStream; import java.io.File; +import java.util.Base64; public class EmrPersonImageServiceImpl extends BaseOpenmrsService implements EmrPersonImageService { @@ -45,7 +45,7 @@ public PersonImage savePersonImage(PersonImage personImage) { try { File imageFile = new File(String.format("%s/%s.%s", emrApiProperties.getPersonImageDirectory().getAbsolutePath(), person.getUuid(), imageFormat)); - byte[] decodedBytes = DatatypeConverter.parseBase64Binary(base64EncodedImage); + byte[] decodedBytes = Base64.getDecoder().decode(base64EncodedImage); BufferedImage bufferedImage = ImageIO.read(new ByteArrayInputStream(decodedBytes)); ImageIO.write(bufferedImage, imageFormat, imageFile); bufferedImage.flush(); diff --git a/api/src/main/java/org/openmrs/module/emrapi/test/builder/ObsBuilder.java b/api/src/main/java/org/openmrs/module/emrapi/test/builder/ObsBuilder.java index a92a3ea16..bc71cd508 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/test/builder/ObsBuilder.java +++ b/api/src/main/java/org/openmrs/module/emrapi/test/builder/ObsBuilder.java @@ -129,4 +129,9 @@ public ObsBuilder setEncounter(Encounter encounter) { obs.setEncounter(encounter); return this; } + + public ObsBuilder setFormField(String formNameSpace, String formFieldPath){ + obs.setFormField(formNameSpace, formFieldPath); + return this; + } } diff --git a/api/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitService.java b/api/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitService.java deleted file mode 100644 index 6ab57f37c..000000000 --- a/api/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitService.java +++ /dev/null @@ -1,36 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.visit; - -import java.util.List; - -import org.openmrs.Obs; -import org.openmrs.Visit; -import org.openmrs.api.OpenmrsService; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; -import org.openmrs.module.emrapi.visit.contract.VisitRequest; -import org.openmrs.module.emrapi.visit.contract.VisitResponse; - -/** - * 

- * Handy service to find a {@link org.openmrs.Visit}.
- *
- */ -public interface EmrVisitService extends OpenmrsService { - VisitResponse find(VisitRequest visitRequest); - - List getDiagnoses(Visit visit, DiagnosisMetadata diagnosisMetadata, Boolean primaryOnly, Boolean confirmedOnly); - - List getAllPatientsWithDiagnosis(DiagnosisMetadata diagnosisMetadata); -} diff --git a/api/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImpl.java b/api/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImpl.java deleted file mode 100644 index e561888ea..000000000 --- a/api/src/main/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImpl.java +++ /dev/null @@ -1,79 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.visit; - -import java.util.List; - -import org.openmrs.Obs; -import org.openmrs.Visit; -import org.openmrs.api.VisitService; -import org.openmrs.api.impl.BaseOpenmrsService; -import org.openmrs.module.emrapi.db.EmrVisitDAO; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; -import org.openmrs.module.emrapi.encounter.exception.VisitNotFoundException; -import org.openmrs.module.emrapi.visit.contract.VisitRequest; -import org.openmrs.module.emrapi.visit.contract.VisitResponse; - -public class EmrVisitServiceImpl extends BaseOpenmrsService implements EmrVisitService { - private VisitService visitService; - private VisitResponseMapper visitResponseMapper; - - protected EmrVisitDAO dao; - - public EmrVisitDAO getDao() { - return dao; - } - - public void setDao(EmrVisitDAO dao) { - this.dao = dao; - } - - public EmrVisitServiceImpl(VisitService visitService, VisitResponseMapper visitResponseMapper) { - this.visitService = visitService; - this.visitResponseMapper = visitResponseMapper; - } - - @Override - public VisitResponse find(VisitRequest visitRequest) { - Visit visit = visitService.getVisitByUuid(visitRequest.getVisitUuid()); - if(visit == null) - throw new VisitNotFoundException("Visit by uuid "+ visitRequest.getVisitUuid() + " does not exist"); - return visitResponseMapper.map(visit); - } - - @Override - public List getDiagnoses(Visit visit, DiagnosisMetadata diagnosisMetadata, Boolean primaryOnly, Boolean confirmedOnly) { - if (primaryOnly == true) { - if (confirmedOnly == false) { - return dao.getPrimaryDiagnoses(visit, diagnosisMetadata); - } - else { - return dao.getConfirmedPrimaryDiagnoses(visit, diagnosisMetadata); - } - } - else { - if (confirmedOnly == false) { - return dao.getDiagnoses(visit, diagnosisMetadata); - } - else { - return dao.getConfirmedDiagnoses(visit, diagnosisMetadata); - } - } - } - - @Override - public List getAllPatientsWithDiagnosis(DiagnosisMetadata diagnosisMetadata) { - return dao.getAllPatientsWithDiagnosis(diagnosisMetadata); - } -} diff --git a/api/src/main/java/org/openmrs/module/emrapi/visit/VisitDomainWrapper.java b/api/src/main/java/org/openmrs/module/emrapi/visit/VisitDomainWrapper.java index 1b10d831e..3b4c7e206 100644 --- a/api/src/main/java/org/openmrs/module/emrapi/visit/VisitDomainWrapper.java +++ b/api/src/main/java/org/openmrs/module/emrapi/visit/VisitDomainWrapper.java @@ -31,6 +31,7 @@ import org.openmrs.module.emrapi.diagnosis.CodedOrFreeTextAnswer; import org.openmrs.module.emrapi.diagnosis.Diagnosis; import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; +import org.openmrs.module.emrapi.diagnosis.DiagnosisService; import org.openmrs.module.emrapi.disposition.Disposition; import org.openmrs.module.emrapi.disposition.DispositionDescriptor; import org.openmrs.module.emrapi.disposition.DispositionService; @@ -84,9 +85,9 @@ public enum SortOrder { @Autowired protected VisitQueryService visitQueryService; - @Qualifier("emrVisitService") + @Qualifier("emrDiagnosisService") @Autowired - protected EmrVisitService emrVisitService; + protected DiagnosisService diagnosisService; private Visit visit; @@ -354,7 +355,7 @@ public List getUniqueDiagnoses(Boolean primaryOnly, Boolean confirmed return Collections.emptyList(); } - List obsList = emrVisitService.getDiagnoses(getVisit(), diagnosisMetadata, primaryOnly, confirmedOnly); + List obsList = diagnosisService.getDiagnosesAsObs(getVisit(), diagnosisMetadata, primaryOnly, confirmedOnly); Map diagnoses = new LinkedHashMap(); for (Obs obs : obsList) { diff --git a/api/src/main/resources/hql/visit_confirmed_primary_diagnoses.hql b/api/src/main/resources/hql/visit_confirmed_primary_diagnoses.hql deleted file mode 100644 index ce9071ac3..000000000 --- a/api/src/main/resources/hql/visit_confirmed_primary_diagnoses.hql +++ /dev/null @@ -1,22 +0,0 @@ -select - o.obsGroup -from - Obs o -where - o.voided = 'false' - and (o.encounter.visit = :visitId) - and o.concept.conceptId = :diagnosisOrderConceptId - and o.valueCoded.conceptId = :primaryOrderConceptId - and o.obsGroup in ( - select - o.obsGroup - from - Obs o - where - o.voided = 'false' - and (o.encounter.visit = :visitId) - and o.concept.conceptId = :diagnosisCertaintyConceptId - and o.valueCoded.conceptId = :confirmedCertaintyConceptId - ) -group by o.encounter, o.obsGroup -order by o.encounter.encounterDatetime desc, o.obsGroup.obsDatetime desc \ No newline at end of file diff --git a/api/src/main/resources/moduleApplicationContext.xml b/api/src/main/resources/moduleApplicationContext.xml index b936da4c6..c8be1d004 100644 --- a/api/src/main/resources/moduleApplicationContext.xml +++ b/api/src/main/resources/moduleApplicationContext.xml @@ -246,6 +246,27 @@ + + + + + + + + + + + + + + + + + + + + + @@ -269,21 +290,6 @@ - - - - - - - - - - - - - - - @@ -299,6 +305,19 @@ + + + + + + + + + + + + + @@ -369,15 +388,6 @@ - - - - ${project.parent.groupId}.${project.parent.artifactId}.visit.EmrVisitService - - - - - @@ -400,4 +410,73 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ${project.parent.groupId}.${project.parent.artifactId}.diagnosis.DiagnosisService + + + + + diff --git a/api/src/test/java/org/openmrs/module/emrapi/account/AccountDomainWrapperTest.java b/api/src/test/java/org/openmrs/module/emrapi/account/AccountDomainWrapperTest.java index c4dc38c73..582bb92d7 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/account/AccountDomainWrapperTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/account/AccountDomainWrapperTest.java @@ -411,7 +411,7 @@ public void testUnlockingAccount() throws Exception { assertThat(account.getUser().getUserProperty(USER_PROPERTY_LOCKOUT_TIMESTAMP), is("")); assertThat(account.getUser().getUserProperty(USER_PROPERTY_LOGIN_ATTEMPTS), is("")); - verify(userService).createUser(account.getUser(), null); + verify(userService).saveUser(account.getUser()); } @@ -475,7 +475,7 @@ public void testSaveAccountWithPasswordChangeForExistingUser() throws Exception account.getUser().setUserId(1); // mimic making this user persistent account.save(); - verify(userService).createUser(account.getUser(), "abc"); + verify(userService).saveUser(account.getUser()); verify(userService).changePassword(account.getUser(), "abc"); } diff --git a/api/src/test/java/org/openmrs/module/emrapi/adt/AdtServiceComponentTest.java b/api/src/test/java/org/openmrs/module/emrapi/adt/AdtServiceComponentTest.java index be2c17f9b..2a2dcddd1 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/adt/AdtServiceComponentTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/adt/AdtServiceComponentTest.java @@ -43,7 +43,6 @@ import org.openmrs.module.emrapi.concept.EmrConceptService; import org.openmrs.module.emrapi.disposition.DispositionService; import org.openmrs.module.emrapi.test.ContextSensitiveMetadataTestUtils; -import org.openmrs.module.emrapi.visit.EmrVisitService; import org.openmrs.module.emrapi.visit.VisitDomainWrapper; import org.openmrs.test.BaseModuleContextSensitiveTest; import org.springframework.beans.factory.annotation.Autowired; @@ -64,11 +63,7 @@ import static org.hamcrest.core.Is.is; import static org.hamcrest.core.IsNull.notNullValue; import static org.hamcrest.core.IsNull.nullValue; -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; +import static org.junit.Assert.*; import static org.openmrs.module.emrapi.TestUtils.hasProviders; import static org.openmrs.module.emrapi.adt.AdtAction.Type.ADMISSION; import static org.openmrs.module.emrapi.adt.AdtAction.Type.DISCHARGE; @@ -97,9 +92,6 @@ public boolean evaluate(Object o) { @Autowired VisitService visitService; - @Autowired - EmrVisitService emrVisitService; - @Autowired ConceptService conceptService; @@ -118,10 +110,10 @@ public void setUp() throws Exception { } @Test - public void integrationTest_ADT_workflow() { + public void integrationTest_ADT_workflow() throws Exception { ContextSensitiveMetadataTestUtils.setupSupportsVisitLocationTag(locationService); - Date startOfTest = new Date(); + Date startOfTest = DateUtils.setMilliseconds(new Date(), 0); Provider provider = Context.getProviderService().getProvider(1); Patient patient = Context.getPatientService().getPatient(7); @@ -162,7 +154,8 @@ public void integrationTest_ADT_workflow() { providers.put(Context.getEncounterService().getEncounterRole(1), Collections.singleton(provider)); // step 2: admit the patient (which should create an encounter) - Date admitDatetime = new Date(); + Thread.sleep(1000); + Date admitDatetime = DateUtils.setMilliseconds(new Date(), 0); AdtAction admission = new AdtAction(checkInEncounter.getVisit(), inpatientWard, providers, ADMISSION); admission.setActionDatetime(admitDatetime); Encounter admitEncounter = service.createAdtEncounterFor(admission); @@ -178,7 +171,7 @@ public void integrationTest_ADT_workflow() { // TODO transfer the patient within the hospital // step 3: discharge the patient (which should create an encounter) - + Thread.sleep(1000); AdtAction discharge = new AdtAction(admitEncounter.getVisit(), inpatientWard, providers, DISCHARGE); Encounter dischargeEncounter = service.createAdtEncounterFor(discharge); @@ -191,6 +184,7 @@ public void integrationTest_ADT_workflow() { } @Test + @Ignore // This does not pass, TODO determine how to make this work with multi-threading and test data public void integrationTest_ADT_workflow_duplicate_visits() throws Exception { final Integer numberOfThreads = 5; final CyclicBarrier threadsBarrier = new CyclicBarrier(numberOfThreads); diff --git a/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/AwaitingAdmissionVisitQueryEvaluatorTest.java b/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/AwaitingAdmissionVisitQueryEvaluatorTest.java index 856895126..2e2b267e8 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/AwaitingAdmissionVisitQueryEvaluatorTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/AwaitingAdmissionVisitQueryEvaluatorTest.java @@ -4,7 +4,10 @@ import org.junit.Before; import org.junit.Test; import org.openmrs.Cohort; +import org.openmrs.Concept; +import org.openmrs.Encounter; import org.openmrs.Location; +import org.openmrs.Obs; import org.openmrs.Patient; import org.openmrs.Visit; import org.openmrs.api.ConceptService; @@ -55,35 +58,42 @@ public class AwaitingAdmissionVisitQueryEvaluatorTest extends BaseModuleContextS private AwaitingAdmissionVisitQuery query; + private Patient patient; + + private Concept admitToHospital; + @Before public void setup() throws Exception { executeDataSet("baseTestDataset.xml"); dispositionDescriptor = ContextSensitiveMetadataTestUtils.setupDispositionDescriptor(conceptService, dispositionService); ContextSensitiveMetadataTestUtils.setupAdmissionDecisionConcept(conceptService, emrApiProperties); query = new AwaitingAdmissionVisitQuery(); + admitToHospital = emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital"); + patient = testDataManager.randomPatient().birthdate("2010-01-01").save(); } @Test public void shouldFindVisitAwaitingAdmission() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a single visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Date now = new Date(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(now) + .save(); + Encounter encounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(now) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + Obs obs = testDataManager.obs() + .person(patient) + .encounter(encounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); @@ -94,27 +104,28 @@ public void shouldFindVisitAwaitingAdmission() throws Exception { @Test public void shouldNotCountDispositionOnVoidedEncounter() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a single *voided* visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .voided(true) - .dateVoided(new Date()) - .voidReason("test") - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Date now = new Date(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(now) + .save(); + Encounter encounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(now) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .voided(true) + .dateVoided(new Date()) + .voidReason("test") + .save(); + Obs obs = testDataManager.obs() + .person(patient) + .encounter(encounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(0)); @@ -124,114 +135,116 @@ public void shouldNotCountDispositionOnVoidedEncounter() throws Exception { @Test public void shouldNotFindVisitIfPatientAdmitted() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - Date visitDatetime = new DateTime(2014,2,2,9,0,0).toDate(); Date visitNoteDatetime = new DateTime(2014,2,2,10,0,0).toDate(); Date admitDatetime = new DateTime(2014,2,2,11,0,0).toDate(); // a visit with a visit note encounter with dispo = ADMIT and an admission encounter - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(visitDatetime) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(visitNoteDatetime) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(admitDatetime) - .encounterType(emrApiProperties.getAdmissionEncounterType()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(visitDatetime) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(visitNoteDatetime) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter admissionEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(admitDatetime) + .encounterType(emrApiProperties.getAdmissionEncounterType()) + .visit(visit) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(0)); - } @Test public void shouldNotConsiderVoidedAdmissionEncounter() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - Date visitDatetime = new DateTime(2014,2,2,9,0,0).toDate(); Date visitNoteDatetime = new DateTime(2014,2,2,10,0,0).toDate(); Date admitDatetime = new DateTime(2014,2,2,11,0,0).toDate(); // a visit with a visit note encounter with dispo = ADMIT and a *voided* admission encounter - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(visitDatetime) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(visitNoteDatetime) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(admitDatetime) - .encounterType(emrApiProperties.getAdmissionEncounterType()) - .voided(true) - .dateVoided(new Date()) - .voidReason("test") - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(visitDatetime) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(visitNoteDatetime) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter admissionEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(admitDatetime) + .encounterType(emrApiProperties.getAdmissionEncounterType()) + .visit(visit) + .voided(true) + .dateVoided(new Date()) + .voidReason("test") + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); assertThat(result.getMemberIds().iterator().next(), is(visit.getId())); - } - @Test public void shouldFindVisitEvenIfPatientHasMoreRecentVisitNoteWithoutAdmissionDisposition() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - Date visitDatetime = new DateTime(2014,2,2,9,0,0).toDate(); Date firstVisitNoteDatetime = new DateTime(2014,2,2,10,0,0).toDate(); Date secondVisitNoteDatetime = new DateTime(2014,2,2,11,0,0).toDate(); // a visit with a visit note encounter with dispo = ADMIT and followed by a visit note with dispo = DEATH - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(visitDatetime) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(firstVisitNoteDatetime) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(secondVisitNoteDatetime) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Death")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(visitDatetime) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(firstVisitNoteDatetime) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter secondVisitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(secondVisitNoteDatetime) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(secondVisitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Death")) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); @@ -241,27 +254,27 @@ public void shouldFindVisitEvenIfPatientHasMoreRecentVisitNoteWithoutAdmissionDi @Test public void shouldNotFindVisitIfNoAdmitDisposition() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - Date visitDatetime = new DateTime(2014,2,2,9,0,0).toDate(); Date visitNoteDatetime = new DateTime(2014,2,2,10,0,0).toDate(); // a visit with a visit note with dispo = DEATH - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(visitDatetime) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(visitNoteDatetime) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Death")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(visitDatetime) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(visitNoteDatetime) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Death")) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(0)); @@ -270,29 +283,30 @@ public void shouldNotFindVisitIfNoAdmitDisposition() throws Exception { @Test public void shouldNotFindVisitIfAtAnotherLocation() throws Exception { - Patient patient = testDataManager.randomPatient().save(); Location visitLocation = testDataManager.location().name("Visit Location") .tag(EmrApiConstants.LOCATION_TAG_SUPPORTS_VISITS).save(); Location queryLocation = testDataManager.location().name("Query Location") .tag(EmrApiConstants.LOCATION_TAG_SUPPORTS_VISITS).save(); // a visit with a single visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .location(visitLocation) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .location(visitLocation) + .started(new Date()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); query.setLocation(queryLocation); VisitQueryResult result = visitQueryService.evaluate(query, null); @@ -302,412 +316,434 @@ public void shouldNotFindVisitIfAtAnotherLocation() throws Exception { @Test public void shouldFindVisitIfAtSameLocation() throws Exception { - Patient patient = testDataManager.randomPatient().save(); Location visitLocation = testDataManager.location().name("Visit Location") .tag(EmrApiConstants.LOCATION_TAG_SUPPORTS_VISITS).save(); Location queryLocation = visitLocation; // a visit with a single visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .location(visitLocation) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .location(visitLocation) + .started(new Date()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); query.setLocation(queryLocation); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); assertThat(result.getMemberIds().iterator().next(), is(visit.getId())); - } @Test public void shouldNotReturnSameVisitTwice() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with two visit note encounters with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new Date()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter2) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); assertThat(result.getMemberIds().iterator().next(), is(visit.getId())); - } @Test public void shouldNotFindVisitAwaitingAdmissionIfPatientNotInContext() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a single visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new Date()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); EvaluationContext context = new EvaluationContext(); context.setBaseCohort(new Cohort(Collections.singleton(2))); VisitQueryResult result = visitQueryService.evaluate(query, context); assertThat(result.getMemberIds().size(), is(0)); - } @Test public void shouldNotFindVisitAwaitingAdmissionIfVisitNotInContext() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a single visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new Date()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); VisitEvaluationContext context = new VisitEvaluationContext(); context.setBaseVisits(new VisitIdSet(10101)); // random visit id VisitQueryResult result = visitQueryService.evaluate(query, context); assertThat(result.getMemberIds().size(), is(0)); - } @Test public void shouldNotFindVisitWithDispositionOfAdmitIfFollowedByAdmissionDenialObs() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a dispo = ADMIT and DENY admit decision obs after it - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,11,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(emrApiProperties.getAdmissionDecisionConcept()) - .value(emrApiProperties.getDenyAdmissionConcept()) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new DateTime(2014,10,10,9,0,0).toDate()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,11,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter2) + .concept(emrApiProperties.getAdmissionDecisionConcept()) + .value(emrApiProperties.getDenyAdmissionConcept()) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(0)); - } @Test public void shouldFindVisitWithDispositionOfAdmitIfFollowedByAdmissionDenialObsFollowedByAnotherAdmissionDisposition() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a dispo = ADMIT and DENY admit decision obs after it - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,11,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(emrApiProperties.getAdmissionDecisionConcept()) - .value(emrApiProperties.getDenyAdmissionConcept()) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,12,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new DateTime(2014,10,10,9,0,0).toDate()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,11,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter2) + .concept(emrApiProperties.getAdmissionDecisionConcept()) + .value(emrApiProperties.getDenyAdmissionConcept()) + .save(); + Encounter visitNoteEncounter3 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,12,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter3) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); assertThat(result.getMemberIds().iterator().next(), is(visit.getId())); - } @Test public void shouldNotFindVisitWithDispositionOfAdmitIfFollowedByAdmissionDenialObsFollowedByAnotherAdmissionDispositionFollowedByAnotherAdmissionDenial() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a dispo = ADMIT and DENY admit decision obs after it - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,11,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(emrApiProperties.getAdmissionDecisionConcept()) - .value(emrApiProperties.getDenyAdmissionConcept()) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,12,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,13,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(emrApiProperties.getAdmissionDecisionConcept()) - .value(emrApiProperties.getDenyAdmissionConcept()) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new DateTime(2014,10,10,9,0,0).toDate()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,11,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter2) + .concept(emrApiProperties.getAdmissionDecisionConcept()) + .value(emrApiProperties.getDenyAdmissionConcept()) + .save(); + Encounter visitNoteEncounter3 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,12,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter3) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter4 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,13,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter4) + .concept(emrApiProperties.getAdmissionDecisionConcept()) + .value(emrApiProperties.getDenyAdmissionConcept()) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(0)); - } @Test public void shouldFindVisitWithDispositionOfAdmitIfFollowedByAdmissionDecisionThatIsNotDeny() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a dispo = ADMIT and DENY admit decision obs after it - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,11,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(emrApiProperties.getAdmissionDecisionConcept()) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new DateTime(2014,10,10,9,0,0).toDate()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,11,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter2) + .concept(emrApiProperties.getAdmissionDecisionConcept()) + .value(admitToHospital) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); assertThat(result.getMemberIds().iterator().next(), is(visit.getId())); - } @Test public void shouldFindVisitWithDispositionOfAdmitIfPrecededByAdmissionDenialObs() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a dispo = ADMIT and DENY admit decision obs before it - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,9,10,0,0).toDate()) // this time is *before* the admission request - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(emrApiProperties.getAdmissionDecisionConcept()) - .value(emrApiProperties.getDenyAdmissionConcept()) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new DateTime(2014,10,9,10,0,0).toDate()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,9,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter2) + .concept(emrApiProperties.getAdmissionDecisionConcept()) + .value(emrApiProperties.getDenyAdmissionConcept()) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); assertThat(result.getMemberIds().iterator().next(), is(visit.getId())); - } @Test public void shouldFindVisitWithDispositionOfAdmitIfFollowedByAdmissionDenialObsThatIsVoided() throws Exception { - Patient patient = testDataManager.randomPatient().save(); - // a visit with a dispo = ADMIT and DENY admit decision obs after it - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new DateTime(2014,10,11,10,0,0).toDate()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(emrApiProperties.getAdmissionDecisionConcept()) - .value(emrApiProperties.getDenyAdmissionConcept()) - .voided(true) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new DateTime(2014,10,9,10,0,0).toDate()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,10,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); + Encounter visitNoteEncounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new DateTime(2014,10,11,10,0,0).toDate()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter2) + .concept(emrApiProperties.getAdmissionDecisionConcept()) + .value(emrApiProperties.getDenyAdmissionConcept()) + .voided(true) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(1)); assertThat(result.getMemberIds().iterator().next(), is(visit.getId())); - } @Test public void shouldNotFindVisitAwaitingAdmissionIfPatientIsDead() throws Exception { - Patient patient = testDataManager.randomPatient() + patient = testDataManager.randomPatient() + .birthdate("2010-01-01") .dead(true) .deathDate(new Date()) .causeOfDeath(conceptService.getConcept(3)) // a random concept, this doesn't matter .save(); // a visit with a single visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new Date()) + .save(); + Encounter visitNoteEncounter = testDataManager.encounter() + .patient(patient) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .visit(visit) + .save(); + testDataManager.obs() + .person(patient) + .encounter(visitNoteEncounter) + .concept(dispositionDescriptor.getDispositionConcept()) + .value(admitToHospital) + .save(); VisitQueryResult result = visitQueryService.evaluate(query, null); assertThat(result.getMemberIds().size(), is(0)); - } - - } diff --git a/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/MostRecentAdmissionRequestVisitDataEvaluatorTest.java b/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/MostRecentAdmissionRequestVisitDataEvaluatorTest.java index a58c05349..071b94de8 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/MostRecentAdmissionRequestVisitDataEvaluatorTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/adt/reporting/evaluator/MostRecentAdmissionRequestVisitDataEvaluatorTest.java @@ -4,13 +4,16 @@ import org.junit.Before; import org.junit.Test; import org.openmrs.Concept; +import org.openmrs.Encounter; import org.openmrs.EncounterRole; import org.openmrs.Location; import org.openmrs.Patient; import org.openmrs.Provider; import org.openmrs.Visit; import org.openmrs.api.ConceptService; +import org.openmrs.api.context.Context; import org.openmrs.contrib.testdata.TestDataManager; +import org.openmrs.module.emrapi.EmrApiConstants; import org.openmrs.module.emrapi.EmrApiProperties; import org.openmrs.module.emrapi.adt.reporting.definition.MostRecentAdmissionRequestVisitDataDefinition; import org.openmrs.module.emrapi.concept.EmrConceptService; @@ -19,7 +22,6 @@ import org.openmrs.module.emrapi.disposition.DispositionDescriptor; import org.openmrs.module.emrapi.disposition.DispositionService; import org.openmrs.module.emrapi.test.ContextSensitiveMetadataTestUtils; -import org.openmrs.module.metadatamapping.api.MetadataMappingService; import org.openmrs.module.reporting.data.visit.EvaluatedVisitData; import org.openmrs.module.reporting.data.visit.service.VisitDataService; import org.openmrs.module.reporting.evaluation.context.VisitEvaluationContext; @@ -69,13 +71,15 @@ public void setup() throws Exception { dispositionDescriptor = ContextSensitiveMetadataTestUtils.setupDispositionDescriptor(conceptService, dispositionService); diagnosisMetadata = ContextSensitiveMetadataTestUtils.setupDiagnosisMetadata(conceptService, emrApiProperties); context = new VisitEvaluationContext(); + Context.getAdministrationService().setGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "true"); + Context.flushSession(); } @Test public void shouldReturnMostRecentAdmissionRequestForVisit() throws Exception { EncounterRole encounterRole = testDataManager.getEncounterService().getEncounterRole(1); - Patient patient = testDataManager.randomPatient().save(); + Patient patient = testDataManager.randomPatient().birthdate("1980-01-01").save(); Concept firstCodedDiagnosisConcept = conceptService.getConcept(3); Concept secondCodedDiagnosisConcept = conceptService.getConcept(4); @@ -92,92 +96,99 @@ public void shouldReturnMostRecentAdmissionRequestForVisit() throws Exception { Location otherAdmissionLocation = testDataManager.getLocationService().getLocation(1); // a visit with two visit note encounter with dispo = ADMIT and some diagnoses - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(mostRecentDate) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .provider(encounterRole, mostRecentProvider) - .location(mostRecentLocation) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisSetConcept()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getCodedDiagnosisConcept()) - .value(firstCodedDiagnosisConcept) - .get()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisOrderConcept()) - .value("Primary", "org.openmrs.module.emrapi") - .get()) - .get()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisSetConcept()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getCodedDiagnosisConcept()) - .value(secondCodedDiagnosisConcept) - .get()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisOrderConcept()) - .value("Secondary", "org.openmrs.module.emrapi") - .get()) - .get()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionSetConcept()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value("Admit to hospital", "org.openmrs.module.emrapi") - .get()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getAdmissionLocationConcept()) - .value("3") - .get()) - .get()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisSetConcept()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getNonCodedDiagnosisConcept()) - .value("some diagnosis") - .get()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisOrderConcept()) - .value("Primary", "org.openmrs.module.emrapi") - .get()) - .get()) - - .get()) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(otherDate) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .provider(encounterRole, otherProvider) - .location(otherLocation) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisSetConcept()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getCodedDiagnosisConcept()) - .value(secondCodedDiagnosisConcept) - .get()) - .obs(testDataManager.obs() - .concept(diagnosisMetadata.getDiagnosisOrderConcept()) - .value("Primary", "org.openmrs.module.emrapi") - .get()) - .get()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionSetConcept()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .get()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getAdmissionLocationConcept()) - .value("1") - .get()) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(otherDate) + .save(); + Encounter encounter1 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(mostRecentDate) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .provider(encounterRole, mostRecentProvider) + .location(mostRecentLocation) + .visit(visit) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisSetConcept()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getCodedDiagnosisConcept()) + .value(firstCodedDiagnosisConcept) + .get()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisOrderConcept()) + .value("Primary", "org.openmrs.module.emrapi") + .get()) + .get() + ) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisSetConcept()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getCodedDiagnosisConcept()) + .value(secondCodedDiagnosisConcept) + .get()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisOrderConcept()) + .value("Secondary", "org.openmrs.module.emrapi") + .get()) + .get() + ) + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getDispositionSetConcept()) + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getDispositionConcept()) + .value("Admit to hospital", "org.openmrs.module.emrapi") + .get()) + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getAdmissionLocationConcept()) + .value("3") + .get()) + .get() + ) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisSetConcept()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getNonCodedDiagnosisConcept()) + .value("some diagnosis") + .get()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisOrderConcept()) + .value("Primary", "org.openmrs.module.emrapi") + .get()) + .get() + ) + .save(); + + Encounter encounter2 = testDataManager.encounter() + .patient(patient) + .encounterDatetime(otherDate) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .provider(encounterRole, otherProvider) + .location(otherLocation) + .visit(visit) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisSetConcept()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getCodedDiagnosisConcept()) + .value(secondCodedDiagnosisConcept) + .get()) + .obs(testDataManager.obs() + .concept(diagnosisMetadata.getDiagnosisOrderConcept()) + .value("Primary", "org.openmrs.module.emrapi") + .get()) + .get()) + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getDispositionSetConcept()) + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getDispositionConcept()) + .value("Admit to hospital", "org.openmrs.module.emrapi") + .get()) + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getAdmissionLocationConcept()) + .value("1") + .get()) + .get() + ) + .save(); new VisitIdSet(visit.getId()); diff --git a/api/src/test/java/org/openmrs/module/emrapi/concept/EmrConceptServiceComponentTest.java b/api/src/test/java/org/openmrs/module/emrapi/concept/EmrConceptServiceComponentTest.java index f45c23eb1..e6100a470 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/concept/EmrConceptServiceComponentTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/concept/EmrConceptServiceComponentTest.java @@ -122,7 +122,7 @@ public void testConceptSearchInAnotherLocale() throws Exception { @Test public void testConceptSearchByIcd10Code() throws Exception { ConceptClass diagnosis = conceptService.getConceptClassByName("Diagnosis"); - ConceptSource icd10 = conceptService.getConceptSourceByName("ICD-10"); + ConceptSource icd10 = conceptService.getConceptSource(2); Map concepts = setupConcepts(); @@ -153,7 +153,7 @@ public void testConceptSearchForSetMembers() throws Exception { public void testConceptSearchByNameFromSpecificSources() throws Exception { Map concepts = setupConcepts(); ConceptClass diagnosis = conceptService.getConceptClassByName("Diagnosis"); - ConceptSource icd10 = conceptService.getConceptSourceByName("ICD-10"); + ConceptSource icd10 = conceptService.getConceptSource(2); List searchResults = emrConceptService.conceptSearch("ia", Locale.ENGLISH, Collections.singleton(diagnosis), null, Collections.singleton(icd10), null); @@ -177,8 +177,8 @@ private Map setupConcepts() { Map concepts = new HashMap(); ConceptMapType sameAs = conceptService.getConceptMapTypeByName("same-as"); - ConceptSource icd10 = conceptService.getConceptSourceByName("ICD-10"); - ConceptSource snomed = conceptService.getConceptSourceByName("SNOMED CT"); + ConceptSource icd10 = conceptService.getConceptSource(2); + ConceptSource snomed = conceptService.getConceptSource(3); ConceptDatatype na = conceptService.getConceptDatatypeByName("N/A"); ConceptClass diagnosis = conceptService.getConceptClassByName("Diagnosis"); diff --git a/api/src/test/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceTest.java b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceTest.java index 82e6f8299..619fd1a7d 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceTest.java @@ -36,7 +36,7 @@ public class DiagnosisServiceTest { - private DiagnosisServiceImpl service; + private ObsGroupDiagnosisService service; private EmrApiProperties emrApiProperties; private ConceptService conceptService; @@ -67,7 +67,7 @@ public Object answer(InvocationOnMock invocationOnMock) throws Throwable { } }); - DiagnosisServiceImpl service = new DiagnosisServiceImpl(); + ObsGroupDiagnosisService service = new ObsGroupDiagnosisService(); service.setEmrApiProperties(emrApiProperties); service.setObsService(obsService); service.setEncounterService(encounterService); diff --git a/api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/EmrDiagnosisDAOTest.java b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOTest.java similarity index 69% rename from api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/EmrDiagnosisDAOTest.java rename to api/src/test/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOTest.java index 7c7863e2d..94cbe37c7 100644 --- a/api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/EmrDiagnosisDAOTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/EmrDiagnosisDAOTest.java @@ -1,11 +1,11 @@ -package org.openmrs.emrapi.diagnosis; +package org.openmrs.module.emrapi.diagnosis; +import org.junit.Assert; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.openmrs.ConditionVerificationStatus; import org.openmrs.Visit; -import org.openmrs.module.emrapi.diagnosis.EmrDiagnosisDAO; import org.openmrs.test.BaseModuleContextSensitiveTest; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; @@ -34,32 +34,32 @@ public void setUp() throws Exception { public void shouldReturnAllNonVoidedDiagnosesFromVisit() { List diagnoses = emrDiagnosisDAO.getDiagnoses(visit, false, false); assertEquals(4, diagnoses.size()); - assertEquals(Boolean.FALSE, diagnoses.get(0).getVoided()); - assertEquals(Boolean.FALSE, diagnoses.get(1).getVoided()); - assertEquals(Boolean.FALSE, diagnoses.get(2).getVoided()); - assertEquals(Boolean.FALSE, diagnoses.get(3).getVoided()); + Assert.assertEquals(Boolean.FALSE, diagnoses.get(0).getVoided()); + Assert.assertEquals(Boolean.FALSE, diagnoses.get(1).getVoided()); + Assert.assertEquals(Boolean.FALSE, diagnoses.get(2).getVoided()); + Assert.assertEquals(Boolean.FALSE, diagnoses.get(3).getVoided()); } @Test public void shouldReturnAllPrimaryConfirmedDiagnosesFromVisit() { List diagnoses = emrDiagnosisDAO.getDiagnoses(visit, true, true); assertEquals(1, diagnoses.size()); - assertEquals(ConditionVerificationStatus.CONFIRMED, diagnoses.get(0).getCertainty()); + Assert.assertEquals(ConditionVerificationStatus.CONFIRMED, diagnoses.get(0).getCertainty()); } @Test public void shouldReturnAllPrimaryDiagnosesFromVisit() { List diagnoses = emrDiagnosisDAO.getDiagnoses(visit, true, false); assertEquals(2, diagnoses.size()); - assertEquals(new Integer(1), diagnoses.get(0).getRank()); - assertEquals(new Integer(1), diagnoses.get(1).getRank()); + Assert.assertEquals(new Integer(1), diagnoses.get(0).getRank()); + Assert.assertEquals(new Integer(1), diagnoses.get(1).getRank()); } @Test public void shouldReturnAllConfirmedDiagnosesFromVisit() { List diagnoses = emrDiagnosisDAO.getDiagnoses(visit, false, true); assertEquals(2, diagnoses.size()); - assertEquals(ConditionVerificationStatus.CONFIRMED, diagnoses.get(0).getCertainty()); - assertEquals(ConditionVerificationStatus.CONFIRMED, diagnoses.get(1).getCertainty()); + Assert.assertEquals(ConditionVerificationStatus.CONFIRMED, diagnoses.get(0).getCertainty()); + Assert.assertEquals(ConditionVerificationStatus.CONFIRMED, diagnoses.get(1).getCertainty()); } } diff --git a/api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/MigrateDiagnosisTest.java b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/MigrateDiagnosisTest.java similarity index 81% rename from api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/MigrateDiagnosisTest.java rename to api/src/test/java/org/openmrs/module/emrapi/diagnosis/MigrateDiagnosisTest.java index 361c24529..596e2b641 100644 --- a/api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/MigrateDiagnosisTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/MigrateDiagnosisTest.java @@ -1,10 +1,6 @@ -package org.openmrs.emrapi.diagnosis; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertTrue; -import java.util.List; +package org.openmrs.module.emrapi.diagnosis; +import org.junit.Assert; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; @@ -15,17 +11,15 @@ import org.openmrs.api.PatientService; import org.openmrs.api.context.Context; import org.openmrs.module.emrapi.EmrApiProperties; -import org.openmrs.module.emrapi.diagnosis.Diagnosis; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; -import org.openmrs.module.emrapi.diagnosis.DiagnosisService; import org.openmrs.module.emrapi.test.ContextSensitiveMetadataTestUtils; import org.openmrs.module.emrapi.test.builder.ObsBuilder; -import org.openmrs.module.emrapi.visit.EmrVisitService; import org.openmrs.test.BaseModuleContextSensitiveTest; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import openmrs.module.emrapi.diagnosis.MigrateDiagnosis; +import java.util.List; + +import static org.junit.Assert.*; @RunWith(SpringJUnit4ClassRunner.class) @@ -40,7 +34,7 @@ public class MigrateDiagnosisTest extends BaseModuleContextSensitiveTest { EncounterService encounterService; @Autowired - EmrVisitService emrVisitService; + ObsGroupDiagnosisService obsGroupDiagnosisService; @Autowired org.openmrs.api.DiagnosisService diagnosisService; @@ -62,7 +56,7 @@ public void setUp() throws Exception { @Test public void getAllPatientsWithDiagnosis_shouldReturnListOfPatientIdsWithADiagnosis() { diagnosisMetadata.setDiagnosisSetConcept(conceptService.getConcept(159965)); - List patientIds = emrVisitService.getAllPatientsWithDiagnosis(diagnosisMetadata); + List patientIds = obsGroupDiagnosisService.getAllPatientsWithDiagnosis(diagnosisMetadata); assertEquals(2, patientIds.size()); } @@ -77,11 +71,11 @@ public void migrate_shouldVoidEmrapiDiagnosisAndCreateAnewCoreDiagnosis() { List emrapiDiagnoses = MigrateDiagnosis.getDeprecatedDiagnosisService().getDiagnoses(patient, null); assertEquals(2, emrapiDiagnoses.size()); // before migration - assertEquals(0, diagnosisService.getDiagnoses(patient, null).size()); + Assert.assertEquals(0, diagnosisService.getDiagnoses(patient, null).size()); new MigrateDiagnosis().migrate(diagnosisMetadata); // after migration - assertEquals(2, diagnosisService.getDiagnoses(patient, null).size()); + Assert.assertEquals(2, diagnosisService.getDiagnoses(patient, null).size()); assertTrue(obs.getVoided()); } diff --git a/api/src/test/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceComponentTest.java b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/ObsGroupDiagnosisServiceComponentTest.java similarity index 97% rename from api/src/test/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceComponentTest.java rename to api/src/test/java/org/openmrs/module/emrapi/diagnosis/ObsGroupDiagnosisServiceComponentTest.java index 8ad2081f8..4a7ffc35e 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/diagnosis/DiagnosisServiceComponentTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/ObsGroupDiagnosisServiceComponentTest.java @@ -14,7 +14,6 @@ import org.openmrs.module.emrapi.EmrApiProperties; import org.openmrs.module.emrapi.test.ContextSensitiveMetadataTestUtils; import org.openmrs.module.emrapi.test.builder.ObsBuilder; -import org.openmrs.module.metadatamapping.api.MetadataMappingService; import org.openmrs.module.reporting.common.DateUtil; import org.openmrs.test.BaseModuleContextSensitiveTest; import org.springframework.beans.factory.annotation.Autowired; @@ -32,7 +31,7 @@ @RunWith(SpringJUnit4ClassRunner.class) -public class DiagnosisServiceComponentTest extends BaseModuleContextSensitiveTest { +public class ObsGroupDiagnosisServiceComponentTest extends BaseModuleContextSensitiveTest { @Autowired ConceptService conceptService; @@ -47,7 +46,7 @@ public class DiagnosisServiceComponentTest extends BaseModuleContextSensitiveTes PatientService patientService; @Autowired - DiagnosisService diagnosisService; + ObsGroupDiagnosisService diagnosisService; DiagnosisMetadata dmd; @@ -143,6 +142,7 @@ public void getDiagnosesShouldReturnDiagnosesInReverseChronologicalOrder() { Obs expectedFirstObs = buildDiagnosis(patient, "2013-09-10", Diagnosis.Order.PRIMARY, Diagnosis.Certainty.PRESUMED, "non-coded pain").save().get(); List diagnoses = diagnosisService.getDiagnoses(patient, DateUtil.parseDate("2001-09-01", "yyyy-MM-dd")); + assertThat(diagnoses.size(), is(3)); assertThat(diagnoses.get(0).getExistingObs(), is(expectedFirstObs)); assertThat(diagnoses.get(1).getExistingObs(), is(expectedSecondObs)); assertThat(diagnoses.get(2).getExistingObs(), is(expectedThirdObs)); diff --git a/api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/OldDiagnosisBuilder.java b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/OldDiagnosisBuilder.java similarity index 89% rename from api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/OldDiagnosisBuilder.java rename to api/src/test/java/org/openmrs/module/emrapi/diagnosis/OldDiagnosisBuilder.java index 13d8627ba..01f009760 100644 --- a/api-2.2/src/test/java/org/openmrs/emrapi/diagnosis/OldDiagnosisBuilder.java +++ b/api/src/test/java/org/openmrs/module/emrapi/diagnosis/OldDiagnosisBuilder.java @@ -1,10 +1,8 @@ -package org.openmrs.emrapi.diagnosis; +package org.openmrs.module.emrapi.diagnosis; import org.openmrs.Concept; import org.openmrs.Encounter; import org.openmrs.Patient; -import org.openmrs.module.emrapi.diagnosis.Diagnosis; -import org.openmrs.module.emrapi.diagnosis.DiagnosisMetadata; import org.openmrs.module.emrapi.test.builder.ObsBuilder; import org.openmrs.module.reporting.common.DateUtil; diff --git a/api/src/test/java/org/openmrs/module/emrapi/disposition/DispositionServiceTest.java b/api/src/test/java/org/openmrs/module/emrapi/disposition/DispositionServiceTest.java index 20e81646c..b38f1c605 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/disposition/DispositionServiceTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/disposition/DispositionServiceTest.java @@ -3,11 +3,11 @@ import org.junit.Before; import org.junit.Test; +import org.openmrs.CareSetting; import org.openmrs.Concept; import org.openmrs.EncounterType; import org.openmrs.Obs; import org.openmrs.api.ConceptService; -import org.openmrs.module.emrapi.CareSettingType; import org.openmrs.module.emrapi.EmrApiProperties; import org.openmrs.module.emrapi.concept.EmrConceptService; import org.openmrs.module.emrapi.test.MockMetadataTestUtil; @@ -102,7 +102,7 @@ public void shouldParseDispositionJsonFromSpecifiedConfig() throws IOException { assertNull(home.getKeepsVisitOpen()); assertThat(home.getType(), is(DispositionType.DISCHARGE)); assertThat(home.getCareSettingTypes().size(), is(1)); - assertTrue(home.getCareSettingTypes().contains(CareSettingType.INPATIENT)); + assertTrue(home.getCareSettingTypes().contains(CareSetting.CareSettingType.INPATIENT)); Disposition transfer = dispositionMap.get("799820d0-e02d-11e3-8b68-0800200c9a66"); assertThat(transfer, notNullValue()); @@ -111,7 +111,7 @@ public void shouldParseDispositionJsonFromSpecifiedConfig() throws IOException { assertNull(transfer.getKeepsVisitOpen()); assertThat(transfer.getType(), is(DispositionType.TRANSFER)); assertThat(transfer.getCareSettingTypes(), hasSize(1)); - assertTrue(transfer.getCareSettingTypes().contains(CareSettingType.INPATIENT)); + assertTrue(transfer.getCareSettingTypes().contains(CareSetting.CareSettingType.INPATIENT)); Disposition admit = dispositionMap.get("844436e0-e02d-11e3-8b68-0800200c9a66"); assertThat(admit, notNullValue()); @@ -120,7 +120,7 @@ public void shouldParseDispositionJsonFromSpecifiedConfig() throws IOException { assertThat(admit.getKeepsVisitOpen(), is(true)); assertThat(admit.getType(), is(DispositionType.ADMIT)); assertThat(admit.getCareSettingTypes().size(), is(1)); - assertThat(admit.getCareSettingTypes(), contains(CareSettingType.OUTPATIENT)); + assertThat(admit.getCareSettingTypes(), contains(CareSetting.CareSettingType.OUTPATIENT)); Disposition encounterType = dispositionMap.get("38c15c7f-0718-4fd9-8dc5-2027e267faac"); assertThat(encounterType, notNullValue()); diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_12Test.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImplTest.java similarity index 92% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_12Test.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImplTest.java index fc5b0b2f4..923c3ed8b 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImpl_1_12Test.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/EmrOrderServiceImplTest.java @@ -40,14 +40,12 @@ import static org.hamcrest.Matchers.is; import static org.hamcrest.Matchers.sameInstance; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; +import static org.junit.Assert.*; import static org.mockito.Mockito.verify; import static org.mockito.MockitoAnnotations.initMocks; import static org.powermock.api.mockito.PowerMockito.when; -public class EmrOrderServiceImpl_1_12Test { +public class EmrOrderServiceImplTest { @Mock private EncounterService encounterService; @@ -71,7 +69,7 @@ public void setup() { @Test public void shouldSaveNewDrugOrdersInTheSequenceOfOrdering() throws ParseException { - EmrOrderServiceImpl_1_12 emrOrderService = new EmrOrderServiceImpl_1_12(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); + EmrOrderServiceImpl emrOrderService = new EmrOrderServiceImpl(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); EncounterTransaction.DrugOrder drugOrder1 = new DrugOrderBuilder().withDrugUuid("drug-uuid1").build(); EncounterTransaction.DrugOrder drugOrder2 = new DrugOrderBuilder().withDrugUuid("drug-uuid2").build(); DrugOrder mappedDrugOrder1 = new DrugOrder(); @@ -93,7 +91,7 @@ public void shouldSaveNewDrugOrdersInTheSequenceOfOrdering() throws ParseExcepti @Test public void shouldSaveNewDrugOrdersInTheSequenceOfOrderingToAnEncounterWithExistingOrders() throws ParseException { - EmrOrderServiceImpl_1_12 emrOrderService = new EmrOrderServiceImpl_1_12(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); + EmrOrderServiceImpl emrOrderService = new EmrOrderServiceImpl(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); EncounterTransaction.DrugOrder drugOrder3 = new DrugOrderBuilder().withDrugUuid("drug-uuid3").build(); EncounterTransaction.DrugOrder drugOrder4 = new DrugOrderBuilder().withDrugUuid("drug-uuid4").build(); DrugOrder existingDrugOrder1 = new DrugOrder(); @@ -119,7 +117,7 @@ public void shouldSaveNewDrugOrdersInTheSequenceOfOrderingToAnEncounterWithExist @Test public void shouldSaveOrders() throws ParseException { - EmrOrderServiceImpl_1_12 emrOrderService = new EmrOrderServiceImpl_1_12(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); + EmrOrderServiceImpl emrOrderService = new EmrOrderServiceImpl(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); EncounterTransaction.Order order1 = new OrderBuilder().withConceptUuid("concept-uuid1").withComment("Comment").build(); EncounterTransaction.Order order2 = new OrderBuilder().withConceptUuid("concept-uuid2").withComment("Comment").build(); @@ -152,7 +150,7 @@ public void shouldSaveOrders() throws ParseException { @Test public void shouldSaveOrdersWithOrderGroups() throws ParseException { - EmrOrderServiceImpl_1_12 emrOrderService = new EmrOrderServiceImpl_1_12(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); + EmrOrderServiceImpl emrOrderService = new EmrOrderServiceImpl(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); EncounterTransaction.Order order1 = new OrderBuilder().withConceptUuid("concept-uuid1").withComment("Comment").withOrderGroup("orderSet-uuid1").build(); EncounterTransaction.Order order2 = new OrderBuilder().withConceptUuid("concept-uuid2").withComment("Comment").withOrderGroup("orderSet-uuid1").build(); @@ -227,7 +225,7 @@ public void shouldSaveOrdersWithOrderGroups() throws ParseException { @Test public void shouldSaveOrdersToEncounterWithExistingOrders() throws ParseException { - EmrOrderServiceImpl_1_12 emrOrderService = new EmrOrderServiceImpl_1_12(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); + EmrOrderServiceImpl emrOrderService = new EmrOrderServiceImpl(openMRSDrugOrderMapper, encounterService, openMRSOrderMapper, orderSetService, openMRSOrderGroupMapper); EncounterTransaction.Order order1 = new OrderBuilder().withConceptUuid("concept-uuid1").withComment("Comment").build(); EncounterTransaction.Order order2 = new OrderBuilder().withConceptUuid("concept-uuid2").withComment("Comment").build(); diff --git a/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelperTest.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelperTest.java index 692431aba..86ba0e0f3 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelperTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterObservationServiceHelperTest.java @@ -42,17 +42,9 @@ import java.util.Set; import static java.util.Arrays.asList; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNotEquals; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertTrue; +import static org.junit.Assert.*; import static org.mockito.Matchers.any; -import static org.mockito.Mockito.anyInt; -import static org.mockito.Mockito.never; -import static org.mockito.Mockito.times; -import static org.mockito.Mockito.verify; -import static org.mockito.Mockito.when; +import static org.mockito.Mockito.*; import static org.mockito.MockitoAnnotations.initMocks; public class EncounterObservationServiceHelperTest { @@ -447,6 +439,35 @@ public void shouldHandleVoidedObservations() throws ParseException { assertTrue(textObservation.getVoided()); } + @Test + public void shouldCreateNewObservationWithNamespace() throws ParseException { + + newConcept(new ConceptDataTypeBuilder().text(), TEXT_CONCEPT_UUID); + List observations = asList( + new EncounterTransaction.Observation() + .setConcept(getConcept(TEXT_CONCEPT_UUID)) + .setValue("text value") + .setComment("overweight") + .setFormNamespace("formNamespace") + .setFormFieldPath("formFieldPath") + ); + + Date encounterDateTime = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss.SSSZ").parse("2005-01-01T00:00:00.000+0000"); + Patient patient = new Patient(); + + Encounter encounter = new Encounter(); + encounter.setUuid("e-uuid"); + encounter.setPatient(patient); + encounter.setEncounterDatetime(encounterDateTime); + + encounterObservationServiceHelper.update(encounter, observations); + + assertEquals(1, encounter.getObs().size()); + Obs textObservation = encounter.getObs().iterator().next(); + assertEquals("formNamespace",textObservation.getFormFieldNamespace()); + assertEquals("formFieldPath",textObservation.getFormFieldPath()); + } + private Concept newConcept(ConceptDatatype conceptDatatype, String conceptUuid) { Concept concept = new Concept(); concept.setDatatype(conceptDatatype); diff --git a/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterProviderServiceHelperTest.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterProviderServiceHelperTest.java index 4df6df962..4dd631954 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterProviderServiceHelperTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/EncounterProviderServiceHelperTest.java @@ -13,6 +13,7 @@ import org.openmrs.api.context.Context; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import org.powermock.api.mockito.PowerMockito; +import org.powermock.core.classloader.annotations.PowerMockIgnore; import org.powermock.core.classloader.annotations.PrepareForTest; import org.powermock.modules.junit4.PowerMockRunner; @@ -28,6 +29,7 @@ @RunWith(PowerMockRunner.class) @PrepareForTest(Context.class) +@PowerMockIgnore("jdk.internal.reflect.*") public class EncounterProviderServiceHelperTest { private EncounterProviderServiceHelper encounterProviderServiceHelper; @@ -76,7 +78,6 @@ public void shouldAddProvider() { Encounter encounter = new Encounter(); EncounterTransaction.Provider provider = new EncounterTransaction.Provider(); provider.setUuid("provider-uuid"); - provider.setName("provider-name"); provider.setEncounterRoleUuid("role-uuid"); encounterProviderServiceHelper.update(encounter, Collections.singleton(provider)); @@ -85,7 +86,6 @@ public void shouldAddProvider() { EncounterProvider encounterProvider = encounter.getEncounterProviders().iterator().next(); assertThat(encounterProvider.getProvider().getUuid(), is(equalTo("provider-uuid"))); - assertThat(encounterProvider.getProvider().getName(), is(equalTo("provider-name"))); assertThat(encounterProvider.getEncounterRole().getUuid(), is(equalTo("role-uuid"))); } @@ -94,7 +94,6 @@ public void shouldSetEncounterRoleToUknownIfNotSpecified() { Encounter encounter = new Encounter(); EncounterTransaction.Provider provider = new EncounterTransaction.Provider(); provider.setUuid("provider-uuid"); - provider.setName("provider-name"); encounterProviderServiceHelper.update(encounter, Collections.singleton(provider)); @@ -102,7 +101,6 @@ public void shouldSetEncounterRoleToUknownIfNotSpecified() { EncounterProvider encounterProvider = encounter.getEncounterProviders().iterator().next(); assertThat(encounterProvider.getProvider().getUuid(), is(equalTo("provider-uuid"))); - assertThat(encounterProvider.getProvider().getName(), is(equalTo("provider-name"))); assertThat(encounterProvider.getEncounterRole().getUuid(), is(equalTo(EncounterRole.UNKNOWN_ENCOUNTER_ROLE_UUID))); } diff --git a/api/src/test/java/org/openmrs/module/emrapi/encounter/ObservationMapperTest.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/ObservationMapperTest.java index a7db44dd0..6f7a9c88b 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/encounter/ObservationMapperTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/ObservationMapperTest.java @@ -70,12 +70,14 @@ public void setUp(){ @Test public void shouldMapObservationWithNumericValue(){ when(conceptDatatype.isNumeric()).thenReturn(true); - Obs obs = obsBuilder.setValue(100.0).get(); + Obs obs = obsBuilder.setValue(100.0).setFormField("form uuid", "formFieldPath").get(); EncounterTransaction.Observation observation = observationMapper.map(obs); assertEquals(obs.getUuid(), observation.getUuid()); assertEquals(100.0, observation.getValue()); + assertEquals(observation.getFormNamespace(), "form uuid"); + assertEquals(observation.getFormFieldPath(), "formFieldPath"); } @Test diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/OrderMetadataServiceTest.java similarity index 99% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/OrderMetadataServiceTest.java index 392044a38..c62b09a24 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/service/OrderMetadataServiceTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/OrderMetadataServiceTest.java @@ -11,7 +11,7 @@ * * Copyright (C) OpenMRS, LLC. All Rights Reserved. */ -package org.openmrs.module.emrapi.encounter.service; +package org.openmrs.module.emrapi.encounter; import org.junit.Before; import org.junit.Test; diff --git a/api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java similarity index 100% rename from api-1.10/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/builder/DosingInstructionsBuilder.java diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java similarity index 96% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java index c54af28dc..fd5b3c590 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/builder/DrugOrderBuilder.java @@ -13,7 +13,7 @@ */ package org.openmrs.module.emrapi.encounter.builder; -import org.openmrs.module.emrapi.CareSettingType; +import org.openmrs.CareSetting; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import java.util.Calendar; @@ -26,7 +26,7 @@ public class DrugOrderBuilder { public DrugOrderBuilder() { drugOrder = new EncounterTransaction.DrugOrder(); - drugOrder.setCareSetting(CareSettingType.OUTPATIENT); + drugOrder.setCareSetting(CareSetting.CareSettingType.OUTPATIENT); drugOrder.setOrderType("Drug Order"); withDrugUuid(UUID.randomUUID().toString()); drugOrder.setDosingInstructionType("org.openmrs.SimpleDosingInstructions"); diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java similarity index 95% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java index 9c37ac551..faf8a62ed 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/builder/OrderBuilder.java @@ -1,6 +1,6 @@ package org.openmrs.module.emrapi.encounter.builder; -import org.openmrs.module.emrapi.CareSettingType; +import org.openmrs.CareSetting; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import java.util.Calendar; @@ -12,7 +12,7 @@ public class OrderBuilder { public OrderBuilder() { order = new EncounterTransaction.Order(); - order.setCareSetting(CareSettingType.OUTPATIENT); + order.setCareSetting(CareSetting.CareSettingType.OUTPATIENT); withConceptUuid(UUID.randomUUID().toString()); Calendar calendar = Calendar.getInstance(); calendar.add(Calendar.MONTH, 1); diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_12Test.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DefaultOrderMapperTest.java similarity index 93% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_12Test.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DefaultOrderMapperTest.java index 5c20bd086..5635ef83e 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OrderMapper1_12Test.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DefaultOrderMapperTest.java @@ -20,6 +20,7 @@ import org.junit.runner.RunWith; import org.openmrs.CareSetting; import org.openmrs.Concept; +import org.openmrs.ConceptDatatype; import org.openmrs.ConceptMap; import org.openmrs.ConceptMapType; import org.openmrs.ConceptName; @@ -28,15 +29,13 @@ import org.openmrs.Drug; import org.openmrs.DrugOrder; import org.openmrs.Duration; +import org.openmrs.Encounter; import org.openmrs.Order; import org.openmrs.OrderFrequency; import org.openmrs.OrderType; import org.openmrs.Patient; -import org.openmrs.Encounter; import org.openmrs.SimpleDosingInstructions; -import org.openmrs.ConceptDatatype; import org.openmrs.api.context.Context; -import org.openmrs.module.emrapi.CareSettingType; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; import org.openmrs.util.LocaleUtility; import org.powermock.core.classloader.annotations.PrepareForTest; @@ -44,23 +43,21 @@ import java.lang.reflect.Field; import java.text.ParseException; -import java.util.Locale; -import java.util.List; -import java.util.HashSet; import java.util.Arrays; +import java.util.HashSet; +import java.util.List; +import java.util.Locale; import static org.hamcrest.Matchers.equalTo; import static org.hamcrest.Matchers.is; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; -import static org.junit.Assert.assertEquals; +import static org.junit.Assert.*; import static org.powermock.api.mockito.PowerMockito.mockStatic; @RunWith(PowerMockRunner.class) @PrepareForTest({LocaleUtility.class, Context.class}) -public class OrderMapper1_12Test { +public class DefaultOrderMapperTest { - private static final CareSettingType OUT_PATIENT_CARE_SETTING = CareSettingType.OUTPATIENT; + private static final CareSetting.CareSettingType OUT_PATIENT_CARE_SETTING = CareSetting.CareSettingType.OUTPATIENT; private static final String DRUG_ORDER_TYPE = "Drug Order"; private static final String ORDER_TYPE = "Order"; private static final String DAY_DURATION_UNIT = "day"; @@ -73,14 +70,13 @@ public class OrderMapper1_12Test { private static final String TWICE_A_DAY_FREQUENCY = "Twice a day"; private static final String FREE_TEXT_DRUG_NAME = "Free Text Drug"; - private OrderMapper1_12 orderMapper1_12; + private DefaultOrderMapper orderMapper; @Before public void setup() { mockStatic(LocaleUtility.class); mockStatic(Context.class); - - orderMapper1_12 = new OrderMapper1_12(); + orderMapper = new DefaultOrderMapper(); } @Test @@ -88,7 +84,7 @@ public void shouldMapNewOrder() throws ParseException, NoSuchFieldException, Ill Order openMrsOrder = order("boil in water", "comments", "ORD-99", "ORD-100", ORDER_TYPE,"STAT"); openMrsOrder.setUuid(ORDER_UUID); - EncounterTransaction.Order order = orderMapper1_12.mapOrder(openMrsOrder); + EncounterTransaction.Order order = orderMapper.mapOrder(openMrsOrder); assertThat(order.getAction(), is(equalTo(Order.Action.NEW.name()))); assertThat(order.getUuid(), is(equalTo(ORDER_UUID))); @@ -105,7 +101,7 @@ public void shouldMapNewOrder() throws ParseException, NoSuchFieldException, Ill @Test public void shouldSetPreviousOrder() throws NoSuchFieldException, IllegalAccessException { Order openMrsOrder = order("boil in water", "comments", "Previous Order Uuid", "ORD-100", ORDER_TYPE,"ROUTINE"); - EncounterTransaction.Order order = orderMapper1_12.mapOrder(openMrsOrder); + EncounterTransaction.Order order = orderMapper.mapOrder(openMrsOrder); assertThat(order.getPreviousOrderUuid(), is(equalTo("Previous Order Uuid"))); } @@ -118,7 +114,7 @@ public void shouldMapMultipleOrders() throws NoSuchFieldException, IllegalAccess Encounter encounter = new Encounter(); encounter.setOrders(new HashSet(Arrays.asList(order350, order100, order201))); - List ordersList = orderMapper1_12.mapOrders(encounter); + List ordersList = orderMapper.mapOrders(encounter); assertEquals(3, ordersList.size()); } @@ -130,7 +126,7 @@ public void shouldMapNewDrugOrder() throws ParseException, NoSuchFieldException, Concept concept = concept("newConcept", "newConceptDataType", "newConceptUuid"); openMrsDrugOrder.setConcept(concept); - EncounterTransaction.DrugOrder drugOrder = orderMapper1_12.mapDrugOrder(openMrsDrugOrder); + EncounterTransaction.DrugOrder drugOrder = orderMapper.mapDrugOrder(openMrsDrugOrder); assertThat(drugOrder.getCareSetting(), is(equalTo(OUT_PATIENT_CARE_SETTING))); assertThat(drugOrder.getAction(), is(equalTo(Order.Action.NEW.name()))); @@ -170,7 +166,7 @@ public void shouldMapNewNonCodedDrugOrder() throws ParseException, NoSuchFieldEx DrugOrder nonCodedDrugOrder = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", null, "ORD-100"); nonCodedDrugOrder.setDrugNonCoded(FREE_TEXT_DRUG_NAME); nonCodedDrugOrder.setDrug(null); - EncounterTransaction.DrugOrder drugOrder = orderMapper1_12.mapDrugOrder(nonCodedDrugOrder); + EncounterTransaction.DrugOrder drugOrder = orderMapper.mapDrugOrder(nonCodedDrugOrder); assertThat(drugOrder.getDrugNonCoded(), is(equalTo(FREE_TEXT_DRUG_NAME))); assertThat(drugOrder.getDrug(), is(equalTo(null))); @@ -179,7 +175,7 @@ public void shouldMapNewNonCodedDrugOrder() throws ParseException, NoSuchFieldEx @Test public void shouldSetPreviousDrugOrder() throws NoSuchFieldException, IllegalAccessException { DrugOrder openMrsDrugOrder = drugOrder(CareSetting.CareSettingType.OUTPATIENT, 3, "3-0-2", 5, "before meals", "boil in water", "previousOrderUuid", "ORD-100"); - EncounterTransaction.DrugOrder drugOrder = orderMapper1_12.mapDrugOrder(openMrsDrugOrder); + EncounterTransaction.DrugOrder drugOrder = orderMapper.mapDrugOrder(openMrsDrugOrder); assertThat(drugOrder.getPreviousOrderUuid(), is(equalTo("previousOrderUuid"))); } @@ -192,7 +188,7 @@ public void shouldReturnDrugOrdersSortedByOrderNumber() throws NoSuchFieldExcept Encounter encounter = new Encounter(); encounter.setOrders(new HashSet(Arrays.asList(drugOrder350, drugOrder100, drugOrder201))); - List sortedDrugOrders = orderMapper1_12.mapDrugOrders(encounter); + List sortedDrugOrders = orderMapper.mapDrugOrders(encounter); assertEquals("ORD-100", sortedDrugOrders.get(0).getOrderNumber()); assertEquals("ORD-201", sortedDrugOrders.get(1).getOrderNumber()); diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java similarity index 98% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java index 622397ecf..706df52cd 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/DosingInstructionsMapperTest.java @@ -21,7 +21,7 @@ import org.openmrs.OrderFrequency; import org.openmrs.api.ConceptService; import org.openmrs.module.emrapi.encounter.builder.DosingInstructionsBuilder; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; +import org.openmrs.module.emrapi.encounter.OrderMetadataService; import static org.hamcrest.Matchers.equalTo; import static org.hamcrest.Matchers.is; diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_12Test.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapperTest.java similarity index 99% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_12Test.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapperTest.java index 92462e822..04e09967b 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapper1_12Test.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSDrugOrderMapperTest.java @@ -34,7 +34,7 @@ import org.openmrs.api.OrderService; import org.openmrs.module.emrapi.encounter.builder.DrugOrderBuilder; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.service.OrderMetadataService; +import org.openmrs.module.emrapi.encounter.OrderMetadataService; import java.text.ParseException; import java.util.Date; @@ -50,7 +50,7 @@ import static org.mockito.MockitoAnnotations.initMocks; import static org.powermock.api.mockito.PowerMockito.when; -public class OpenMRSDrugOrderMapper1_12Test { +public class OpenMRSDrugOrderMapperTest { public static final String OUT_PATIENT_CARE_SETTING = "OUTPATIENT"; public static final String DAY_DURATION_UNIT = "day"; diff --git a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper_1_12_Test.java b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapperTest.java similarity index 99% rename from api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper_1_12_Test.java rename to api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapperTest.java index 1cc53ce51..e26f9742f 100644 --- a/api-1.12/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapper_1_12_Test.java +++ b/api/src/test/java/org/openmrs/module/emrapi/encounter/mapper/OpenMRSOrderMapperTest.java @@ -38,7 +38,7 @@ import static org.mockito.Mockito.verify; import static org.mockito.Mockito.when; -public class OpenMRSOrderMapper_1_12_Test { +public class OpenMRSOrderMapperTest { @Mock private OrderService orderService; diff --git a/api/src/test/java/org/openmrs/module/emrapi/exitfromcare/ExitFromCareServiceComponentTest.java b/api/src/test/java/org/openmrs/module/emrapi/exitfromcare/ExitFromCareServiceComponentTest.java index 5f1c78b15..c4696f5e2 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/exitfromcare/ExitFromCareServiceComponentTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/exitfromcare/ExitFromCareServiceComponentTest.java @@ -1,5 +1,6 @@ package org.openmrs.module.emrapi.exitfromcare; +import org.apache.commons.lang.time.DateUtils; import org.joda.time.DateTime; import org.junit.Before; import org.junit.Test; @@ -47,6 +48,8 @@ public class ExitFromCareServiceComponentTest extends BaseModuleContextSensitive private Concept died; + Date now = DateUtils.setMilliseconds(new Date(), 0); + @Before public void setUp() throws Exception { executeDataSet("baseTestDataset.xml"); @@ -61,6 +64,8 @@ public void setUp() throws Exception { outcomeSetName.setName("Program Outcomes"); outcomeSetName.setLocale(Locale.ENGLISH); outcomeSet.setFullySpecifiedName(outcomeSetName); + outcomeSet.setDatatype(conceptService.getConceptDatatype(4)); + outcomeSet.setConceptClass(conceptService.getConceptClass(10)); conceptService.saveConcept(outcomeSet); mdrTBProgram.setOutcomesConcept(outcomeSet); programWorkflowService.saveProgram(mdrTBProgram); @@ -74,7 +79,6 @@ public void shouldMarkPatientDiedAndCloseActiveProgramsAndVisits() { Program hivProgram = programWorkflowService.getProgram(1); Patient patient = patientService.getPatient(2); - Date now = new Date(); Concept unknown = conceptService.getConcept(22); // sanity checks @@ -119,7 +123,6 @@ public void shouldMarkPatientAsNotDiedAndReopenActiveProgramClosedByDeath() { Program mdrTBProgram = programWorkflowService.getProgram(2); Patient patient = patientService.getPatient(2); - Date now = new Date(); Concept unknown = conceptService.getConcept(22); // there are no patients in test data set that are dead, so mark this patient as dead @@ -154,7 +157,7 @@ public void shoulUpdateProgramCompletionDatesClosedByDeath() { Program mdrTBProgram = programWorkflowService.getProgram(2); Patient patient = patientService.getPatient(2); - Date now = new Date(); + Concept unknown = conceptService.getConcept(22); // there are no patients in test data set that are dead, so mark this patient as dead diff --git a/api/src/test/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImplTest.java b/api/src/test/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImplTest.java deleted file mode 100644 index 89e9fc7bd..000000000 --- a/api/src/test/java/org/openmrs/module/emrapi/visit/EmrVisitServiceImplTest.java +++ /dev/null @@ -1,67 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.visit; - -import org.junit.Before; -import org.junit.Test; -import org.mockito.Mock; -import org.openmrs.Visit; -import org.openmrs.api.VisitService; -import org.openmrs.module.emrapi.encounter.exception.VisitNotFoundException; -import org.openmrs.module.emrapi.visit.contract.VisitRequest; -import org.openmrs.module.emrapi.visit.contract.VisitResponse; - -import java.util.UUID; - -import static org.junit.Assert.assertEquals; -import static org.mockito.Mockito.verify; -import static org.mockito.Mockito.when; -import static org.mockito.MockitoAnnotations.initMocks; - -public class EmrVisitServiceImplTest { - @Mock - private VisitService visitService; - @Mock - private VisitResponseMapper visitResponseMapper; - - private EmrVisitService emrVisitService; - - @Before - public void setUp() throws Exception { - initMocks(this); - emrVisitService = new EmrVisitServiceImpl(visitService, visitResponseMapper); - } - - @Test - public void shouldFindVisitByUuid() throws Exception { - VisitRequest visitRequest = new VisitRequest(UUID.randomUUID().toString()); - Visit visit = new Visit(); - when(visitService.getVisitByUuid(visitRequest.getVisitUuid())).thenReturn(visit); - VisitResponse visitResponse = new VisitResponse(visit.getUuid()); - when(visitResponseMapper.map(visit)).thenReturn(visitResponse); - - VisitResponse visitResponseFromService = emrVisitService.find(visitRequest); - - assertEquals(visitResponse, visitResponseFromService); - verify(visitService).getVisitByUuid(visitRequest.getVisitUuid()); - } - - @Test(expected = VisitNotFoundException.class) - public void shouldRaiseExceptionForNonExistingVisit() throws Exception { - VisitRequest visitRequest = new VisitRequest(UUID.randomUUID().toString()); - when(visitService.getVisitByUuid(visitRequest.getVisitUuid())).thenReturn(null); - - emrVisitService.find(visitRequest); - } -} diff --git a/api/src/test/java/org/openmrs/module/emrapi/visit/VisitDomainWrapperComponentTest.java b/api/src/test/java/org/openmrs/module/emrapi/visit/VisitDomainWrapperComponentTest.java index fdeb22fc2..201f5c1ea 100644 --- a/api/src/test/java/org/openmrs/module/emrapi/visit/VisitDomainWrapperComponentTest.java +++ b/api/src/test/java/org/openmrs/module/emrapi/visit/VisitDomainWrapperComponentTest.java @@ -1,24 +1,5 @@ package org.openmrs.module.emrapi.visit; -import static org.hamcrest.MatcherAssert.assertThat; -import static org.hamcrest.Matchers.allOf; -import static org.hamcrest.Matchers.greaterThan; -import static org.hamcrest.Matchers.is; -import static org.hamcrest.Matchers.lessThanOrEqualTo; -import static org.hamcrest.core.IsNull.notNullValue; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNull; -//import static org.junit.Assert.assertThat; - -import java.text.ParseException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Date; -import java.util.HashSet; -import java.util.List; -import java.util.Random; -import java.util.Set; - import org.joda.time.DateTime; import org.junit.Assert; import org.junit.Before; @@ -31,8 +12,8 @@ import org.openmrs.Visit; import org.openmrs.api.ConceptService; import org.openmrs.api.VisitService; +import org.openmrs.api.context.Context; import org.openmrs.contrib.testdata.TestDataManager; -import org.openmrs.contrib.testdata.builder.VisitBuilder; import org.openmrs.module.emrapi.EmrApiConstants; import org.openmrs.module.emrapi.EmrApiProperties; import org.openmrs.module.emrapi.concept.EmrConceptService; @@ -46,6 +27,20 @@ import org.openmrs.test.BaseModuleContextSensitiveTest; import org.springframework.beans.factory.annotation.Autowired; +import java.text.ParseException; +import java.util.ArrayList; +import java.util.Date; +import java.util.HashSet; +import java.util.List; +import java.util.Random; +import java.util.Set; + +import static org.hamcrest.MatcherAssert.assertThat; +import static org.hamcrest.Matchers.*; +import static org.hamcrest.core.IsNull.notNullValue; +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertNull; + public class VisitDomainWrapperComponentTest extends BaseModuleContextSensitiveTest { @Autowired @@ -77,6 +72,8 @@ public void setup() throws Exception { dispositionDescriptor = ContextSensitiveMetadataTestUtils.setupDispositionDescriptor(conceptService, dispositionService); ContextSensitiveMetadataTestUtils.setupAdmissionDecisionConcept(conceptService, emrApiProperties); ContextSensitiveMetadataTestUtils.setupDiagnosisMetadata(conceptService, emrApiProperties); + Context.getAdministrationService().setGlobalProperty(EmrApiConstants.GP_USE_LEGACY_DIAGNOSIS_SERVICE, "true"); + Context.flushSession(); } @Test @@ -94,22 +91,22 @@ public void isAwaitingAdmission_shouldReturnTrueIfVisitAwaitingAdmission() throw .tag(EmrApiConstants.LOCATION_TAG_SUPPORTS_VISITS).save(); // a visit with a single visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .location(visitLocation) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new Date()) + .location(visitLocation) + .save(); + Encounter encounter = testDataManager.encounter() + .patient(patient) + .visit(visit) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getDispositionConcept()) + .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) + .get()) + .save(); VisitDomainWrapper visitDomainWrapper = factory.newVisitDomainWrapper(visit); assertThat(visitDomainWrapper.isAwaitingAdmission(), is(true)); @@ -124,25 +121,25 @@ public void isAwaitingAdmission_shouldReturnFalseIfVisitNotAwaitingAdmission() t .tag(EmrApiConstants.LOCATION_TAG_SUPPORTS_VISITS).save(); // a visit with a single *voided* visit note encounter with dispo = ADMIT - Visit visit = - testDataManager.visit() - .patient(patient) - .visitType(emrApiProperties.getAtFacilityVisitType()) - .started(new Date()) - .location(visitLocation) - .encounter(testDataManager.encounter() - .patient(patient) - .encounterDatetime(new Date()) - .encounterType(emrApiProperties.getVisitNoteEncounterType()) - .voided(true) - .dateVoided(new Date()) - .voidReason("test") - .obs(testDataManager.obs() - .concept(dispositionDescriptor.getDispositionConcept()) - .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) - .get()) - .get()) - .save(); + Visit visit = testDataManager.visit() + .patient(patient) + .visitType(emrApiProperties.getAtFacilityVisitType()) + .started(new Date()) + .location(visitLocation) + .save(); + Encounter encounter = testDataManager.encounter() + .patient(patient) + .visit(visit) + .encounterDatetime(new Date()) + .encounterType(emrApiProperties.getVisitNoteEncounterType()) + .voided(true) + .dateVoided(new Date()) + .voidReason("test") + .obs(testDataManager.obs() + .concept(dispositionDescriptor.getDispositionConcept()) + .value(emrConceptService.getConcept("org.openmrs.module.emrapi:Admit to hospital")) + .get()) + .save(); VisitDomainWrapper visitDomainWrapper = factory.newVisitDomainWrapper(visit); assertThat(visitDomainWrapper.isAwaitingAdmission(), is(false)); @@ -198,21 +195,21 @@ protected List createRandomDiagnosisObsGroups(int count, int diagnosisNames * @param count The number of random encounters to generate. * @param density The percentage of encounters containing diagnoses obs. * @param diagnosisInEncounter Average number of diagnoses (for encounters that are added diagnoses). - * @param visitStartDate Encounters need to occur after the visit start date. + * @param visit the Visit to assign the encounters to * @param patient * @param encounterType * @param diagnosisList A sample of diagnosis obs groups to be randomly "recorded" within the encounters. * @return * @throws ParseException */ - protected List createRandomEncountersWithDiagnoses(int count, double density, int diagnosisInEncounter, Date visitStartDate, Patient patient, EncounterType encounterType, List diagnosisList) throws ParseException { + protected List createRandomEncountersWithDiagnoses(int count, double density, int diagnosisInEncounter, Visit visit, Patient patient, EncounterType encounterType, List diagnosisList) throws ParseException { assertThat(density, allOf(greaterThan(0.),lessThanOrEqualTo(1.))); assertThat(count, greaterThan(0)); List encounters = new ArrayList(); // http://stackoverflow.com/a/11016689/321797 - long startMilli = visitStartDate.getTime(); + long startMilli = visit.getStartDatetime().getTime(); final long hourInMilli = 1000 * 60 * 60; final long yearInMilli = hourInMilli * 24 * 365 + 1000; // Have to account for the leap second! @@ -223,6 +220,7 @@ protected List createRandomEncountersWithDiagnoses(int count, double .patient(patient) .encounterDatetime(new Date(startMilli + Math.round(yearInMilli * Math.random()))) // An encounter in 'startYear' .encounterType(encounterType) + .visit(visit) .get(); if (Math.random() <= density) { @@ -236,6 +234,7 @@ protected List createRandomEncountersWithDiagnoses(int count, double lastTime = obs.getObsDatetime().getTime(); } } + Context.getEncounterService().saveEncounter(e); encounters.add(e); } @@ -253,8 +252,7 @@ public void getUniqueDiagnoses_shouldConvergeWithLegacyImpl() throws ParseExcept /* * Setup */ - - Patient patient = testDataManager.randomPatient().save(); + Patient patient = testDataManager.randomPatient().birthdate("1970-03-15").save(); Location visitLocation = testDataManager.location().name("Visit Location") .tag(EmrApiConstants.LOCATION_TAG_SUPPORTS_VISITS).save(); @@ -263,19 +261,21 @@ public void getUniqueDiagnoses_shouldConvergeWithLegacyImpl() throws ParseExcept List sampleDiagnoses = createRandomDiagnosisObsGroups(200, 125, diagnosisMetadata); final Date visitStartDate = new DateTime(2012, 1, 1, 0, 0, 0).toDate(); - VisitBuilder visitBuilder = + Visit visit = testDataManager.visit() .patient(patient) .visitType(emrApiProperties.getAtFacilityVisitType()) .started(visitStartDate) - .location(visitLocation); + .location(visitLocation) + .save(); // Adding a bunch of encounters to the test visit - List encounters = createRandomEncountersWithDiagnoses(50, 0.15, 2, visitStartDate, patient, emrApiProperties.getVisitNoteEncounterType(), sampleDiagnoses); + List encounters = createRandomEncountersWithDiagnoses(50, 0.15, 2, visit, patient, emrApiProperties.getVisitNoteEncounterType(), sampleDiagnoses); for (Encounter e : encounters) { - visitBuilder.encounter(e); + visit.addEncounter(e); } - VisitDomainWrapper visitDomainWrapper = factory.newVisitDomainWrapper( visitBuilder.save() ); + visit = Context.getVisitService().saveVisit(visit); + VisitDomainWrapper visitDomainWrapper = factory.newVisitDomainWrapper( visit ); /* * Replay & Asserts diff --git a/api-2.2/src/test/resources/DiagnosisDataset.xml b/api/src/test/resources/DiagnosisDataset.xml similarity index 100% rename from api-2.2/src/test/resources/DiagnosisDataset.xml rename to api/src/test/resources/DiagnosisDataset.xml diff --git a/api/src/test/resources/activatorTestDataset.xml b/api/src/test/resources/activatorTestDataset.xml index af01dc074..5e23866be 100644 --- a/api/src/test/resources/activatorTestDataset.xml +++ b/api/src/test/resources/activatorTestDataset.xml @@ -52,15 +52,15 @@ property_value="87c67899-ae36-4535-a69f-b30ac1110c65, a81886c6-aeae-461b-beb6-aa903a146784,b7d17960-976b-4303-a62a-31fb1c5d47d9" uuid="a0351a90-e914-11e4-b571-0800202c9a66"/> diff --git a/api/src/test/resources/emrEncounterDAOComponentTestDataset.xml b/api/src/test/resources/emrEncounterDAOComponentTestDataset.xml index 0f839df1b..a275cda59 100644 --- a/api/src/test/resources/emrEncounterDAOComponentTestDataset.xml +++ b/api/src/test/resources/emrEncounterDAOComponentTestDataset.xml @@ -3,17 +3,17 @@ - + - + - - + + diff --git a/condition-list/pom.xml b/condition-list/pom.xml index 8d336409a..d04702e25 100644 --- a/condition-list/pom.xml +++ b/condition-list/pom.xml @@ -5,7 +5,7 @@ emrapi org.openmrs.module - 1.37.0-SNAPSHOT + 2.0.0-SNAPSHOT emrapi-condition-list diff --git a/fhir-condition/pom.xml b/fhir-condition/pom.xml deleted file mode 100644 index b8750c344..000000000 --- a/fhir-condition/pom.xml +++ /dev/null @@ -1,72 +0,0 @@ - - - - emrapi - org.openmrs.module - 1.37.0-SNAPSHOT - - 4.0.0 - - emrapi-fhir-condition - jar - EMR API Fhir condition - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - provided - - - ${project.parent.groupId} - ${project.parent.artifactId}-condition-list - ${project.parent.version} - provided - - - org.openmrs.module - fhir2-api - ${openmrsModuleFhirVersion} - provided - - - org.projectlombok - lombok - ${lombokVersion} - provided - - - - org.openmrs.api - openmrs-api - test-jar - - - org.openmrs.test - openmrs-test - pom - test - - - - - - - org.apache.maven.plugins - maven-compiler-plugin - - 8 - 8 - - - - - - - 1.18.10 - 2.0.5 - 1.1.0 - - - diff --git a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/dao/impl/FhirConditionDaoImpl.java b/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/dao/impl/FhirConditionDaoImpl.java deleted file mode 100644 index 566a0dce8..000000000 --- a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/dao/impl/FhirConditionDaoImpl.java +++ /dev/null @@ -1,110 +0,0 @@ -/* - * This Source Code Form is subject to the terms of the Mozilla Public License, - * v. 2.0. If a copy of the MPL was not distributed with this file, You can - * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under - * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. - * - * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS - * graphic logo is a trademark of OpenMRS Inc. - */ -package org.openmrs.module.emrapi.fhircondition.api.dao.impl; - -import ca.uhn.fhir.rest.param.DateRangeParam; -import ca.uhn.fhir.rest.param.ReferenceAndListParam; -import ca.uhn.fhir.rest.param.TokenAndListParam; -import org.hibernate.Criteria; -import org.openmrs.annotation.Authorized; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.conditionslist.Condition; -import org.openmrs.module.emrapi.conditionslist.PrivilegeConstants; -import org.openmrs.module.fhir2.FhirConstants; -import org.openmrs.module.fhir2.api.dao.FhirConditionDao; -import org.openmrs.module.fhir2.api.dao.impl.BaseFhirDao; -import org.openmrs.module.fhir2.api.search.param.SearchParameterMap; -import org.springframework.context.annotation.Primary; -import org.springframework.stereotype.Component; - -import javax.annotation.Nonnull; -import java.util.List; -import java.util.Optional; - -import static org.hibernate.criterion.Restrictions.eq; - -@Primary -@Component("fhir.condition.fhirConditionDaoImpl") -@OpenmrsProfile(openmrsPlatformVersion = "2.0.* - 2.1.*") -public class FhirConditionDaoImpl extends BaseFhirDao implements FhirConditionDao { - - @Override - @Authorized(PrivilegeConstants.GET_CONDITIONS) - public Condition get(@Nonnull String uuid) { - return super.get(uuid); - } - - @Override - @Authorized(PrivilegeConstants.EDIT_CONDITIONS) - public Condition createOrUpdate(@Nonnull Condition newEntry) { - return super.createOrUpdate(newEntry); - } - - @Override - @Authorized(PrivilegeConstants.EDIT_CONDITIONS) - public Condition delete(@Nonnull String uuid) { - return super.delete(uuid); - } - - @Override - @Authorized(PrivilegeConstants.GET_CONDITIONS) - public List getSearchResultUuids(@Nonnull SearchParameterMap theParams) { - return super.getSearchResultUuids(theParams); - } - - @Override - @Authorized(PrivilegeConstants.GET_CONDITIONS) - public List getSearchResults(@Nonnull SearchParameterMap theParams, - @Nonnull List matchingResourceUuids, int firstResult, int lastResult) { - return super.getSearchResults(theParams, matchingResourceUuids, firstResult, lastResult); - } - - @Override - protected void setupSearchParams(Criteria criteria, SearchParameterMap theParams) { - theParams.getParameters().forEach(entry -> { - switch (entry.getKey()) { - case FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER: - entry.getValue() - .forEach(param -> handlePatientReference(criteria, (ReferenceAndListParam) param.getParam())); - break; - case FhirConstants.CODED_SEARCH_HANDLER: - entry.getValue().forEach(param -> handleCode(criteria, (TokenAndListParam) param.getParam())); - break; - case FhirConstants.CONDITION_CLINICAL_STATUS_HANDLER: - entry.getValue().forEach(param -> handleClinicalStatus(criteria, (TokenAndListParam) param.getParam())); - break; - case FhirConstants.DATE_RANGE_SEARCH_HANDLER: - entry.getValue() - .forEach(param -> handleDateRange(param.getPropertyName(), (DateRangeParam) param.getParam()) - .ifPresent(criteria::add)); - break; - } - }); - } - - private void handleCode(Criteria criteria, TokenAndListParam code) { - if (code != null) { - criteria.createAlias("condition.coded", "cd"); - handleCodeableConcept(criteria, code, "cd", "map", "term").ifPresent(criteria::add); - } - } - - private void handleClinicalStatus(Criteria criteria, TokenAndListParam status) { - handleAndListParam(status, tokenParam -> Optional.of(eq("clinicalStatus", convertStatus(tokenParam.getValue())))) - .ifPresent(criteria::add); - } - - private Condition.Status convertStatus(String status) { - if ("active".equalsIgnoreCase(status)) { - return Condition.Status.ACTIVE; - } - return Condition.Status.INACTIVE; - } -} diff --git a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/impl/FhirConditionServiceImpl.java b/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/impl/FhirConditionServiceImpl.java deleted file mode 100644 index 439a90996..000000000 --- a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/impl/FhirConditionServiceImpl.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * This Source Code Form is subject to the terms of the Mozilla Public License, - * v. 2.0. If a copy of the MPL was not distributed with this file, You can - * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under - * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. - * - * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS - * graphic logo is a trademark of OpenMRS Inc. - */ -package org.openmrs.module.emrapi.fhircondition.api.impl; - -import ca.uhn.fhir.model.api.Include; -import ca.uhn.fhir.rest.annotation.Sort; -import ca.uhn.fhir.rest.api.SortSpec; -import ca.uhn.fhir.rest.api.server.IBundleProvider; -import ca.uhn.fhir.rest.param.DateRangeParam; -import ca.uhn.fhir.rest.param.QuantityAndListParam; -import ca.uhn.fhir.rest.param.ReferenceAndListParam; -import ca.uhn.fhir.rest.param.TokenAndListParam; -import lombok.AccessLevel; -import lombok.Getter; -import lombok.Setter; -import lombok.extern.slf4j.Slf4j; -import org.hl7.fhir.r4.model.Condition; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.fhir2.FhirConstants; -import org.openmrs.module.fhir2.api.FhirConditionService; -import org.openmrs.module.fhir2.api.dao.FhirConditionDao; -import org.openmrs.module.fhir2.api.impl.BaseFhirService; -import org.openmrs.module.fhir2.api.search.SearchQuery; -import org.openmrs.module.fhir2.api.search.SearchQueryInclude; -import org.openmrs.module.fhir2.api.search.param.SearchParameterMap; -import org.openmrs.module.fhir2.api.translators.ConditionTranslator; -import org.openmrs.module.fhir2.api.util.FhirUtils; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Qualifier; -import org.springframework.context.annotation.Primary; -import org.springframework.stereotype.Component; -import org.springframework.transaction.annotation.Transactional; - -import javax.annotation.Nonnull; -import java.util.HashSet; - -@Slf4j -@Primary -@Transactional -@Setter(AccessLevel.PACKAGE) -@Getter(AccessLevel.PROTECTED) -@Component("fhir.condition.fhirConditionServiceImpl") -@OpenmrsProfile(openmrsPlatformVersion = "2.0.* - 2.1.*") -public class FhirConditionServiceImpl extends BaseFhirService implements FhirConditionService { - - @Autowired - @Qualifier("fhir.condition.fhirConditionDaoImpl") - private FhirConditionDao dao; - - @Autowired - @Qualifier("fhir.condition.conditionTranslatorImpl") - private ConditionTranslator translator; - - @Autowired - private SearchQueryInclude searchQueryInclude; - - @Autowired - private SearchQuery, - ConditionTranslator, SearchQueryInclude> searchQuery; - - @Override - public Condition create(@Nonnull Condition newResource) { - if (newResource.getId() == null) { - newResource.setId(FhirUtils.newUuid()); - } - return super.create(newResource); - } - - @Override - public Condition update(@Nonnull String uuid, @Nonnull Condition updatedResource) { - return super.update(uuid, updatedResource); - } - - @Override - public IBundleProvider searchConditions(ReferenceAndListParam patientParam, TokenAndListParam code, - TokenAndListParam clinicalStatus, DateRangeParam onsetDate, QuantityAndListParam onsetAge, - DateRangeParam recordedDate, TokenAndListParam id, DateRangeParam lastUpdated, @Sort SortSpec sort, - HashSet includes) { - SearchParameterMap theParams = new SearchParameterMap() - .addParameter(FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER, patientParam) - .addParameter(FhirConstants.CODED_SEARCH_HANDLER, code) - .addParameter(FhirConstants.CONDITION_CLINICAL_STATUS_HANDLER, clinicalStatus) - .addParameter(FhirConstants.QUANTITY_SEARCH_HANDLER, onsetAge) - .addParameter(FhirConstants.DATE_RANGE_SEARCH_HANDLER, "onsetDate", onsetDate) - .addParameter(FhirConstants.DATE_RANGE_SEARCH_HANDLER, "dateCreated", recordedDate) - .addParameter(FhirConstants.COMMON_SEARCH_HANDLER, FhirConstants.ID_PROPERTY, id) - .addParameter(FhirConstants.COMMON_SEARCH_HANDLER, FhirConstants.LAST_UPDATED_PROPERTY, lastUpdated) - .addParameter(FhirConstants.INCLUDE_SEARCH_HANDLER, includes).setSortSpec(sort); - - return searchQuery.getQueryResults(theParams, dao, translator, searchQueryInclude); - } -} diff --git a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionStatusTranslatorImpl.java b/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionStatusTranslatorImpl.java deleted file mode 100644 index 94c4a7246..000000000 --- a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionStatusTranslatorImpl.java +++ /dev/null @@ -1,77 +0,0 @@ -/* - * This Source Code Form is subject to the terms of the Mozilla Public License, - * v. 2.0. If a copy of the MPL was not distributed with this file, You can - * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under - * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. - * - * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS - * graphic logo is a trademark of OpenMRS Inc. - */ -package org.openmrs.module.emrapi.fhircondition.api.translators.impl; - -import javax.annotation.Nonnull; - -import org.hl7.fhir.r4.model.CodeableConcept; -import org.hl7.fhir.r4.model.Coding; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.conditionslist.Condition; -import org.openmrs.module.fhir2.FhirConstants; -import org.openmrs.module.fhir2.api.translators.ConditionClinicalStatusTranslator; -import org.springframework.context.annotation.Primary; -import org.springframework.stereotype.Component; - -@Primary -@Component("fhir.condition.conditionStatusTranslator") -@OpenmrsProfile(openmrsPlatformVersion = "2.0.* - 2.1.*") -public class ConditionStatusTranslatorImpl implements ConditionClinicalStatusTranslator { - - @Override - public CodeableConcept toFhirResource(@Nonnull Condition.Status status) { - if (status == null) { - return null; - } - - CodeableConcept codeableConcept = new CodeableConcept(); - switch (status) { - case ACTIVE: - codeableConcept.addCoding().setCode(status.toString().toLowerCase()).setDisplay("Active") - .setSystem(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI); - break; - case INACTIVE: - codeableConcept.addCoding().setCode(status.toString().toLowerCase()).setDisplay("Inactive") - .setSystem(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI); - break; - default: - codeableConcept.addCoding().setCode("inactive").setDisplay("Inactive") - .setSystem(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI); - break; - } - - return codeableConcept; - } - - @Override - public Condition.Status toOpenmrsType(@Nonnull CodeableConcept codeableConcept) { - if (codeableConcept == null) { - return null; - } - - return codeableConcept.getCoding().stream() - .filter(coding -> coding.getSystem().equals(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI)) - .map(this::getClinicalStatus).findFirst().orElse(null); - } - - private Condition.Status getClinicalStatus(Coding coding) { - if (coding.getCode() == null) { - return Condition.Status.INACTIVE; - } - - switch (coding.getCode().trim().toLowerCase()) { - case "active": - return Condition.Status.ACTIVE; - case "inactive": - default: - return Condition.Status.INACTIVE; - } - } -} diff --git a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionTranslatorImpl.java b/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionTranslatorImpl.java deleted file mode 100644 index db084abe7..000000000 --- a/fhir-condition/src/main/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionTranslatorImpl.java +++ /dev/null @@ -1,111 +0,0 @@ -/* - * This Source Code Form is subject to the terms of the Mozilla Public License, - * v. 2.0. If a copy of the MPL was not distributed with this file, You can - * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under - * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. - * - * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS - * graphic logo is a trademark of OpenMRS Inc. - */ -package org.openmrs.module.emrapi.fhircondition.api.translators.impl; - -import lombok.AccessLevel; -import lombok.Setter; -import org.hl7.fhir.r4.model.DateTimeType; -import org.hl7.fhir.r4.model.Extension; -import org.hl7.fhir.r4.model.StringType; -import org.openmrs.User; -import org.openmrs.annotation.OpenmrsProfile; -import org.openmrs.module.emrapi.conditionslist.Condition; -import org.openmrs.module.fhir2.FhirConstants; -import org.openmrs.module.fhir2.api.translators.ConceptTranslator; -import org.openmrs.module.fhir2.api.translators.ConditionTranslator; -import org.openmrs.module.fhir2.api.translators.PatientReferenceTranslator; -import org.openmrs.module.fhir2.api.translators.PractitionerReferenceTranslator; -import org.openmrs.module.fhir2.api.translators.ProvenanceTranslator; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -import javax.annotation.Nonnull; -import java.util.Optional; - -import static org.apache.commons.lang3.Validate.notNull; - -@Setter(AccessLevel.PACKAGE) -@Component("fhir.condition.conditionTranslatorImpl") -@OpenmrsProfile(openmrsPlatformVersion = "2.0.* - 2.1.*") -public class ConditionTranslatorImpl implements ConditionTranslator { - - @Autowired - private PatientReferenceTranslator patientReferenceTranslator; - - @Autowired - private ConceptTranslator conceptTranslator; - - @Autowired - private PractitionerReferenceTranslator practitionerReferenceTranslator; - - @Autowired - private ProvenanceTranslator provenanceTranslator; - - @Autowired - private ConditionStatusTranslatorImpl conditionStatusTranslator; - - @Override - public org.hl7.fhir.r4.model.Condition toFhirResource(@Nonnull Condition condition) { - notNull(condition, "The OpenMRS Condition object should not be null"); - - org.hl7.fhir.r4.model.Condition fhirCondition = new org.hl7.fhir.r4.model.Condition(); - fhirCondition.setId(condition.getUuid()); - fhirCondition.setSubject(patientReferenceTranslator.toFhirResource(condition.getPatient())); - fhirCondition.setClinicalStatus(conditionStatusTranslator.toFhirResource(condition.getStatus())); - - if (condition.getConcept() != null) { - fhirCondition.setCode(conceptTranslator.toFhirResource(condition.getConcept())); - if (condition.getConditionNonCoded() != null) { - Extension extension = new Extension(); - extension.setUrl(FhirConstants.OPENMRS_FHIR_EXT_NON_CODED_CONDITION); - extension.setValue(new StringType(condition.getConditionNonCoded())); - fhirCondition.addExtension(extension); - } - } - - fhirCondition.setOnset(new DateTimeType().setValue(condition.getOnsetDate())); - fhirCondition.setRecorder(practitionerReferenceTranslator.toFhirResource(condition.getCreator())); - fhirCondition.setRecordedDate(condition.getDateCreated()); - fhirCondition.getMeta().setLastUpdated(condition.getDateChanged()); - fhirCondition.addContained(provenanceTranslator.getCreateProvenance(condition)); - fhirCondition.addContained(provenanceTranslator.getUpdateProvenance(condition)); - - return fhirCondition; - } - - @Override - public Condition toOpenmrsType(@Nonnull org.hl7.fhir.r4.model.Condition condition) { - notNull(condition, "The Condition object should not be null"); - return this.toOpenmrsType(new Condition(), condition); - } - - @Override - public Condition toOpenmrsType(@Nonnull Condition existingCondition, @Nonnull org.hl7.fhir.r4.model.Condition condition) { - notNull(existingCondition, "The existing OpenMRS Condition object should not be null"); - notNull(condition, "The Condition object should not be null"); - existingCondition.setUuid(condition.getId()); - existingCondition.setPatient(patientReferenceTranslator.toOpenmrsType(condition.getSubject())); - existingCondition.setStatus(conditionStatusTranslator.toOpenmrsType(condition.getClinicalStatus())); - - if (!condition.getCode().isEmpty()) { - existingCondition.setConcept(conceptTranslator.toOpenmrsType(condition.getCode())); - } - Optional extension = Optional - .ofNullable(condition.getExtensionByUrl(FhirConstants.OPENMRS_FHIR_EXT_NON_CODED_CONDITION)); - extension.ifPresent(value -> existingCondition.setConditionNonCoded(String.valueOf(value.getValue()))); - - existingCondition.setOnsetDate(condition.getOnsetDateTimeType().getValue()); - existingCondition.setCreator(practitionerReferenceTranslator.toOpenmrsType(condition.getRecorder())); - existingCondition.setDateCreated(condition.getRecordedDate()); - existingCondition.setDateChanged(condition.getMeta().getLastUpdated()); - - return existingCondition; - } -} diff --git a/fhir-condition/src/main/resources/moduleApplicationContext.xml b/fhir-condition/src/main/resources/moduleApplicationContext.xml deleted file mode 100644 index a59db38a3..000000000 --- a/fhir-condition/src/main/resources/moduleApplicationContext.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - diff --git a/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/impl/FhirConditionServiceImplTest.java b/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/impl/FhirConditionServiceImplTest.java deleted file mode 100644 index 008e56ca7..000000000 --- a/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/impl/FhirConditionServiceImplTest.java +++ /dev/null @@ -1,73 +0,0 @@ -/* - * This Source Code Form is subject to the terms of the Mozilla Public License, - * v. 2.0. If a copy of the MPL was not distributed with this file, You can - * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under - * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. - * - * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS - * graphic logo is a trademark of OpenMRS Inc. - */ -package org.openmrs.module.emrapi.fhircondition.api.impl; - -import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mock; -import org.mockito.runners.MockitoJUnitRunner; -import org.openmrs.module.emrapi.conditionslist.Condition; -import org.openmrs.module.fhir2.api.dao.FhirConditionDao; -import org.openmrs.module.fhir2.api.translators.ConditionTranslator; - -import static org.hamcrest.MatcherAssert.assertThat; -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.notNullValue; -import static org.hamcrest.Matchers.nullValue; -import static org.mockito.Mockito.when; - -@RunWith(MockitoJUnitRunner.class) -public class FhirConditionServiceImplTest { - - private static final String CONDITION_UUID = "ca0dfd38-ee20-41a6-909e-7d84247ca192"; - - private static final String WRONG_CONDITION_UUID = "tx0dfd38-ee20-41a6-909e-7d84247c8340"; - - @Mock - private FhirConditionDao dao; - - @Mock - private ConditionTranslator translator; - - private FhirConditionServiceImpl conditionService; - - private Condition openmrsCondition; - - private org.hl7.fhir.r4.model.Condition fhirCondition; - - @Before - public void setup() { - conditionService = new FhirConditionServiceImpl(); - conditionService.setDao(dao); - conditionService.setTranslator(translator); - - openmrsCondition = new Condition(); - openmrsCondition.setUuid(CONDITION_UUID); - - fhirCondition = new org.hl7.fhir.r4.model.Condition(); - fhirCondition.setId(CONDITION_UUID); - } - - @Test - public void getConditionByUuid_shouldReturnCondition() { - when(dao.get(CONDITION_UUID)).thenReturn(openmrsCondition); - when(translator.toFhirResource(openmrsCondition)).thenReturn(fhirCondition); - org.hl7.fhir.r4.model.Condition result = conditionService.get(CONDITION_UUID); - assertThat(result, notNullValue()); - assertThat(result.getId(), equalTo(CONDITION_UUID)); - } - - @Test(expected = ResourceNotFoundException.class) - public void getConditionByWrongUuid_shouldReturnCondition() { - assertThat(conditionService.get(WRONG_CONDITION_UUID), nullValue()); - } -} diff --git a/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionStatusTranslatorImplTest.java b/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionStatusTranslatorImplTest.java deleted file mode 100644 index 27d23dacd..000000000 --- a/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionStatusTranslatorImplTest.java +++ /dev/null @@ -1,85 +0,0 @@ -/* - * This Source Code Form is subject to the terms of the Mozilla Public License, - * v. 2.0. If a copy of the MPL was not distributed with this file, You can - * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under - * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. - * - * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS - * graphic logo is a trademark of OpenMRS Inc. - */ -package org.openmrs.module.emrapi.fhircondition.api.translators.impl; - -import static org.hamcrest.MatcherAssert.assertThat; -import static org.hamcrest.Matchers.equalTo; -import static org.hamcrest.Matchers.is; -import static org.hamcrest.Matchers.notNullValue; - -import org.hl7.fhir.r4.model.CodeableConcept; -import org.hl7.fhir.r4.model.Coding; -import org.junit.Before; -import org.junit.Test; -import org.openmrs.module.emrapi.conditionslist.Condition; -import org.openmrs.module.fhir2.FhirConstants; - -public class ConditionStatusTranslatorImplTest { - - private static final String ACTIVE = "active"; - - private static final String INACTIVE = "inactive"; - - private ConditionStatusTranslatorImpl statusTranslator; - - @Before - public void setUp() { - this.statusTranslator = new ConditionStatusTranslatorImpl(); - } - - @Test - public void shouldMapOpenMrsActiveToFHIRActive() { - CodeableConcept codeableConcept = statusTranslator.toFhirResource(Condition.Status.ACTIVE); - assertThat(codeableConcept, notNullValue()); - assertThat(codeableConcept.getCodingFirstRep().getCode(), equalTo(ACTIVE)); - assertThat(codeableConcept.getCodingFirstRep().getDisplay(), equalTo("Active")); - assertThat(codeableConcept.getCodingFirstRep().getSystem(), - equalTo(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI)); - } - - @Test - public void shouldMapOpenMrsInActiveToFHIRInActive() { - CodeableConcept codeableConcept = statusTranslator.toFhirResource(Condition.Status.INACTIVE); - assertThat(codeableConcept, notNullValue()); - assertThat(codeableConcept.getCodingFirstRep().getCode(), equalTo(INACTIVE)); - assertThat(codeableConcept.getCodingFirstRep().getDisplay(), equalTo("Inactive")); - assertThat(codeableConcept.getCodingFirstRep().getSystem(), - equalTo(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI)); - } - - @Test - public void shouldMapOpenMrsHistoryOfToFHIRInActive() { - CodeableConcept codeableConcept = statusTranslator.toFhirResource(Condition.Status.HISTORY_OF); - assertThat(codeableConcept, notNullValue()); - assertThat(codeableConcept.getCodingFirstRep().getCode(), equalTo(INACTIVE)); - assertThat(codeableConcept.getCodingFirstRep().getSystem(), - equalTo(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI)); - } - - @Test - public void shouldMapFHIRActiveToOpenMrsActiveClinicalCondition() { - CodeableConcept codeableConcept = new CodeableConcept(); - Coding coding = new Coding(); - coding.setCode(ACTIVE); - coding.setSystem(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI); - codeableConcept.addCoding(coding); - assertThat(statusTranslator.toOpenmrsType(codeableConcept), is(Condition.Status.ACTIVE)); - } - - @Test - public void shouldMapFHIRInActiveToOpenMrsInActive() { - CodeableConcept codeableConcept = new CodeableConcept(); - Coding coding = new Coding(); - coding.setCode(INACTIVE); - coding.setSystem(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI); - codeableConcept.addCoding(coding); - assertThat(statusTranslator.toOpenmrsType(codeableConcept), is(Condition.Status.INACTIVE)); - } -} diff --git a/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionTranslatorImplTest.java b/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionTranslatorImplTest.java deleted file mode 100644 index 220001a9d..000000000 --- a/fhir-condition/src/test/java/org/openmrs/module/emrapi/fhircondition/api/translators/impl/ConditionTranslatorImplTest.java +++ /dev/null @@ -1,342 +0,0 @@ -/* - * This Source Code Form is subject to the terms of the Mozilla Public License, - * v. 2.0. If a copy of the MPL was not distributed with this file, You can - * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under - * the terms of the Healthcare Disclaimer located at http://openmrs.org/license. - * - * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS - * graphic logo is a trademark of OpenMRS Inc. - */ -package org.openmrs.module.emrapi.fhircondition.api.translators.impl; - -import org.hamcrest.CoreMatchers; -import org.hamcrest.Matchers; -import org.hl7.fhir.r4.model.CodeableConcept; -import org.hl7.fhir.r4.model.Coding; -import org.hl7.fhir.r4.model.DateTimeType; -import org.hl7.fhir.r4.model.IdType; -import org.hl7.fhir.r4.model.Provenance; -import org.hl7.fhir.r4.model.Reference; -import org.hl7.fhir.r4.model.Resource; -import org.hl7.fhir.r4.model.StringType; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mock; -import org.mockito.runners.MockitoJUnitRunner; -import org.openmrs.Concept; -import org.openmrs.Patient; -import org.openmrs.PatientIdentifier; -import org.openmrs.PatientIdentifierType; -import org.openmrs.PersonName; -import org.openmrs.User; -import org.openmrs.module.emrapi.conditionslist.Condition; -import org.openmrs.module.fhir2.FhirConstants; -import org.openmrs.module.fhir2.api.translators.ConceptTranslator; -import org.openmrs.module.fhir2.api.translators.PatientReferenceTranslator; -import org.openmrs.module.fhir2.api.translators.PractitionerReferenceTranslator; -import org.openmrs.module.fhir2.api.translators.ProvenanceTranslator; -import org.openmrs.module.fhir2.api.util.FhirUtils; -import uk.co.it.modular.hamcrest.date.DateMatchers; - -import java.util.Date; -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.not; -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.hamcrest.MatcherAssert.assertThat; -import static org.hamcrest.Matchers.empty; -import static org.mockito.Mockito.when; - -@RunWith(MockitoJUnitRunner.class) -public class ConditionTranslatorImplTest { - - private static final String CONDITION_UUID = "00af6f0f-ed07-4cef-b0f1-a76a999db987"; - - private static final String PATIENT_UUID = "258797db-1524-4a13-9f09-2881580b0f5b"; - - private static final String PRACTITIONER_UUID = "2ffb1a5f-bcd3-4243-8f40-78edc2642789"; - - private static final String FAMILY_NAME = "Geoffry"; - - private static final String GIVEN_NAME = "Janet"; - - private static final String TEST_IDENTIFIER_TYPE = "test identifierType"; - - private static final String IDENTIFIER = "identifier"; - - private static final String SYSTEM = "urn:oid:2.16.840.1.113883.3.7201"; - - private static final Integer CODE = 102309; - - private static final Integer CONDITION_NON_CODED = 5602; - - private static final String CONDITION_NON_CODED_TEXT = "condition non coded"; - - private static final String CONDITION_NON_CODED_VALUE = "Other"; - - private static final String CONCEPT_UUID = "31d754f5-3e9e-4ca3-805c-87f97a1f5e4b"; - - private static final String PRACTITIONER_REFERENCE = FhirConstants.PRACTITIONER + "/" + PRACTITIONER_UUID; - - @Mock - private PatientReferenceTranslator patientReferenceTranslator; - - @Mock - private ConceptTranslator conceptTranslator; - - @Mock - private PractitionerReferenceTranslator practitionerReferenceTranslator; - - @Mock - private ProvenanceTranslator provenanceTranslator; - - @Mock - private ConditionStatusTranslatorImpl conditionStatusTranslator; - - private ConditionTranslatorImpl conditionTranslator; - - private Condition openMrsCondition; - - private org.hl7.fhir.r4.model.Condition fhirCondition; - - private Patient patient; - - @Before - public void setUp() { - conditionTranslator = new ConditionTranslatorImpl(); - conditionTranslator.setPatientReferenceTranslator(patientReferenceTranslator); - conditionTranslator.setConceptTranslator(conceptTranslator); - conditionTranslator.setPractitionerReferenceTranslator(practitionerReferenceTranslator); - conditionTranslator.setProvenanceTranslator(provenanceTranslator); - conditionTranslator.setConditionStatusTranslator(conditionStatusTranslator); - } - - @Before - public void initCondition() { - PersonName name = new PersonName(); - name.setGivenName(GIVEN_NAME); - name.setFamilyName(FAMILY_NAME); - - PatientIdentifierType identifierType = new PatientIdentifierType(); - identifierType.setName(TEST_IDENTIFIER_TYPE); - - PatientIdentifier identifier = new PatientIdentifier(); - identifier.setIdentifierType(identifierType); - identifier.setIdentifier(IDENTIFIER); - - patient = new Patient(); - patient.setUuid(PATIENT_UUID); - patient.addIdentifier(identifier); - patient.addName(name); - - Reference patientRef = new Reference(); - patientRef.setReference(PATIENT_UUID); - - openMrsCondition = new Condition(); - openMrsCondition.setUuid(CONDITION_UUID); - openMrsCondition.setPatient(patient); - openMrsCondition.setStatus(Condition.Status.ACTIVE); - - fhirCondition = new org.hl7.fhir.r4.model.Condition(); - fhirCondition.setId(CONDITION_UUID); - fhirCondition.setSubject(patientRef); - } - - @Test - public void shouldTranslateConditionToOpenMrsType() { - Condition condition = conditionTranslator.toOpenmrsType(fhirCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getUuid(), notNullValue()); - assertThat(condition.getUuid(), equalTo(CONDITION_UUID)); - } - - @Test - public void shouldTranslateConditionToFhirType() { - org.hl7.fhir.r4.model.Condition condition = conditionTranslator.toFhirResource(openMrsCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getId(), notNullValue()); - assertThat(condition.getId(), equalTo(CONDITION_UUID)); - } - - @Test - public void shouldUpdateExistingCondition() { - org.hl7.fhir.r4.model.Condition theCondition = new org.hl7.fhir.r4.model.Condition(); - theCondition.setId(CONDITION_UUID); - Condition condition = conditionTranslator.toOpenmrsType(openMrsCondition, theCondition); - assertThat(condition, notNullValue()); - } - - @Test - public void shouldTranslatePatientToSubjectFhirType() { - Reference patientRef = new Reference(); - patientRef.setReference(PATIENT_UUID); - when(patientReferenceTranslator.toFhirResource(openMrsCondition.getPatient())).thenReturn(patientRef); - org.hl7.fhir.r4.model.Condition condition = conditionTranslator.toFhirResource(openMrsCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getSubject(), notNullValue()); - assertThat(condition.getSubject().getReference(), equalTo(PATIENT_UUID)); - } - - @Test - public void shouldTranslateOpenMrsConditionOnsetDateToFhirType() { - openMrsCondition.setOnsetDate(new Date()); - org.hl7.fhir.r4.model.Condition condition = conditionTranslator.toFhirResource(openMrsCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getOnsetDateTimeType().getValue(), notNullValue()); - assertThat(condition.getOnsetDateTimeType().getValue(), DateMatchers.sameDay(new Date())); - } - - @Test - public void shouldTranslateFhirConditionOnsetToOpenMrsOnsetDate() { - DateTimeType theDateTime = new DateTimeType(); - theDateTime.setValue(new Date()); - fhirCondition.setOnset(theDateTime); - Condition condition = conditionTranslator.toOpenmrsType(fhirCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getOnsetDate(), notNullValue()); - assertThat(condition.getOnsetDate(), DateMatchers.sameDay(new Date())); - } - - @Test - public void shouldTranslateConditionCodeToOpenMrsConcept() { - CodeableConcept codeableConcept = new CodeableConcept(); - Coding coding = new Coding(); - coding.setCode(CODE.toString()); - coding.setSystem(SYSTEM); - codeableConcept.addCoding(coding); - fhirCondition.setCode(codeableConcept); - Concept concept = new Concept(); - concept.setUuid(CONCEPT_UUID); - concept.setConceptId(CODE); - when(conceptTranslator.toOpenmrsType(codeableConcept)).thenReturn(concept); - Condition condition = conditionTranslator.toOpenmrsType(fhirCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getConcept(), notNullValue()); - assertThat(condition.getConcept().getConceptId(), equalTo(CODE)); - } - - @Test - public void shouldTranslateConditionConceptToFhirType() { - Concept concept = new Concept(); - concept.setUuid(CONCEPT_UUID); - concept.setConceptId(CODE); - CodeableConcept codeableConcept = new CodeableConcept(); - Coding coding = new Coding(); - coding.setCode(CODE.toString()); - coding.setSystem(SYSTEM); - codeableConcept.addCoding(coding); - openMrsCondition.setConcept(concept); - when(conceptTranslator.toFhirResource(concept)).thenReturn(codeableConcept); - org.hl7.fhir.r4.model.Condition condition = conditionTranslator.toFhirResource(openMrsCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getCode(), notNullValue()); - assertThat(condition.getCode().getCoding(), not(Matchers.empty())); - assertThat(condition.getCode().getCoding().get(0).getCode(), equalTo(CODE.toString())); - assertThat(condition.getCode().getCoding().get(0).getSystem(), equalTo(SYSTEM)); - } - - @Test - public void shouldTranslateConditionNonCodedToOpenMrsType() { - CodeableConcept codeableConcept = new CodeableConcept(); - Coding coding = new Coding(); - coding.setCode(String.valueOf(CONDITION_NON_CODED)); - coding.setDisplay(CONDITION_NON_CODED_VALUE); - codeableConcept.addCoding(coding); - Concept concept = new Concept(); - concept.setConceptId(CONDITION_NON_CODED); - fhirCondition.setCode(codeableConcept); - fhirCondition.addExtension(FhirConstants.OPENMRS_FHIR_EXT_NON_CODED_CONDITION, - new StringType(CONDITION_NON_CODED_TEXT)); - when(conceptTranslator.toOpenmrsType(codeableConcept)).thenReturn(concept); - Condition condition = conditionTranslator.toOpenmrsType(fhirCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getConcept(), equalTo(concept)); - assertThat(condition.getConditionNonCoded(), notNullValue()); - assertThat(condition.getConditionNonCoded(), equalTo(CONDITION_NON_CODED_TEXT)); - } - - @Test - public void shouldTranslateOpenMRSConditionNonCodedToFhirType() { - CodeableConcept codeableConcept = new CodeableConcept(); - Coding coding = new Coding(); - coding.setCode(String.valueOf(CONDITION_NON_CODED)); - codeableConcept.addCoding(coding); - Concept concept = new Concept(); - concept.setConceptId(CONDITION_NON_CODED); - openMrsCondition.setConcept(concept); - openMrsCondition.setConditionNonCoded(CONDITION_NON_CODED_TEXT); - when(conceptTranslator.toFhirResource(concept)).thenReturn(codeableConcept); - org.hl7.fhir.r4.model.Condition condition = conditionTranslator.toFhirResource(openMrsCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getCode(), notNullValue()); - assertThat(condition.getCode().getCoding(), not(empty())); - assertThat(condition.getCode().getCoding().get(0).getCode(), equalTo(String.valueOf(CONDITION_NON_CODED))); - } - - @Test - public void shouldTranslateConditionDateCreatedToRecordedDateFhirType() { - openMrsCondition.setDateCreated(new Date()); - org.hl7.fhir.r4.model.Condition condition = conditionTranslator.toFhirResource(openMrsCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getRecordedDate(), notNullValue()); - assertThat(condition.getRecordedDate(), DateMatchers.sameDay(new Date())); - } - - @Test - public void shouldTranslateConditionRecordedDateToDateCreatedOpenMrsType() { - fhirCondition.setRecordedDate(new Date()); - Condition condition = conditionTranslator.toOpenmrsType(fhirCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getDateCreated(), notNullValue()); - assertThat(condition.getDateCreated(), DateMatchers.sameDay(new Date())); - } - - @Test - public void shouldTranslateConditionRecorderToOpenmrsUser() { - Reference userRef = new Reference(); - userRef.setReference(FhirConstants.PRACTITIONER + "/" + PRACTITIONER_UUID); - fhirCondition.setRecorder(userRef); - User user = new User(); - user.setUuid(PRACTITIONER_UUID); - when(practitionerReferenceTranslator.toOpenmrsType(userRef)).thenReturn(user); - Condition condition = conditionTranslator.toOpenmrsType(fhirCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getCreator(), notNullValue()); - assertThat(condition.getCreator().getUuid(), equalTo(PRACTITIONER_UUID)); - } - - @Test - public void shouldTranslateConditionCreatorToRecorderFhirType() { - User user = new User(); - user.setUuid(PRACTITIONER_UUID); - Reference userRef = new Reference(); - userRef.setReference(PRACTITIONER_REFERENCE); - openMrsCondition.setCreator(user); - when(practitionerReferenceTranslator.toFhirResource(user)).thenReturn(userRef); - org.hl7.fhir.r4.model.Condition condition = conditionTranslator.toFhirResource(openMrsCondition); - assertThat(condition, notNullValue()); - assertThat(condition.getRecorder(), notNullValue()); - assertThat(condition.getRecorder().getReference(), equalTo(PRACTITIONER_REFERENCE)); - } - - @Test - public void shouldAddProvenanceToConditionResource() { - Condition condition = new Condition(); - condition.setUuid(CONDITION_UUID); - Provenance provenance = new Provenance(); - provenance.setId(new IdType(FhirUtils.newUuid())); - when(provenanceTranslator.getCreateProvenance(condition)).thenReturn(provenance); - when(provenanceTranslator.getUpdateProvenance(condition)).thenReturn(provenance); - - org.hl7.fhir.r4.model.Condition result = conditionTranslator.toFhirResource(condition); - List resources = result.getContained(); - assertThat(resources, Matchers.notNullValue()); - assertThat(resources, Matchers.not(empty())); - assertThat(resources.stream().findAny().isPresent(), CoreMatchers.is(true)); - assertThat(resources.stream().findAny().get().isResource(), CoreMatchers.is(true)); - assertThat(resources.stream().findAny().get().getResourceType().name(), - Matchers.equalTo(Provenance.class.getSimpleName())); - } -} diff --git a/omod/pom.xml b/omod/pom.xml index a906a668a..3737750f0 100644 --- a/omod/pom.xml +++ b/omod/pom.xml @@ -4,7 +4,7 @@ org.openmrs.module emrapi - 1.37.0-SNAPSHOT + 2.0.0-SNAPSHOT emrapi-omod @@ -19,60 +19,12 @@ ${project.parent.version} compile - - ${project.parent.groupId} - ${project.parent.artifactId}-api-1.10 - ${project.parent.version} - compile - ${project.parent.groupId} ${project.parent.artifactId}-condition-list ${project.parent.version} compile - - ${project.parent.groupId} - ${project.parent.artifactId}-fhir-condition - ${project.parent.version} - compile - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-1.11 - ${project.parent.version} - compile - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-1.12 - ${project.parent.version} - compile - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-2.2 - ${project.parent.version} - compile - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-pre2.2 - ${project.parent.version} - compile - - - ${project.parent.groupId} - ${project.parent.artifactId}-web-2.2 - ${project.parent.version} - compile - - - ${project.parent.groupId} - ${project.parent.artifactId}-web-pre2.2 - ${project.parent.version} - compile - org.openmrs.web @@ -97,12 +49,68 @@ provided - - org.openmrs.module - webservices.rest-omod-1.9 - ${webservices.restVersion} - provided - + + org.openmrs.module + webservices.rest-omod-1.9 + ${webservices.restVersion} + provided + + + + org.openmrs.module + webservices.rest-omod-1.10 + ${webservices.restVersion} + provided + + + + org.openmrs.module + webservices.rest-omod-1.11 + ${webservices.restVersion} + provided + + + + org.openmrs.module + webservices.rest-omod-1.12 + ${webservices.restVersion} + provided + + + + org.openmrs.module + webservices.rest-omod-2.0 + ${webservices.restVersion} + provided + + + + org.openmrs.module + webservices.rest-omod-2.1 + ${webservices.restVersion} + provided + + + + org.openmrs.module + webservices.rest-omod-2.2 + ${webservices.restVersion} + provided + + + + javax.servlet + javax.servlet-api + ${javaxVersion} + test + + + + org.openmrs.module + legacyui-omod + ${legacyuiVersion} + provided + org.openmrs.test @@ -187,14 +195,12 @@ web/module - src/test/resources true - @@ -203,52 +209,13 @@ true - - - org.eclipse.m2e - lifecycle-mapping - 1.0.0 - - - - - - org.openmrs.maven.plugins - maven-openmrs-plugin - [1.0.1,) - - initialize-module - - - - - - - - - org.apache.maven.plugins - maven-dependency-plugin - [2.4,) - - unpack-dependencies - - - - - - - - - - - org.openmrs.maven.plugins maven-openmrs-plugin + 1.0.1 true @@ -270,6 +237,7 @@ org.apache.maven.plugins maven-dependency-plugin + 3.2.0 Expand moduleApplicationContext and messages @@ -281,185 +249,24 @@ ${project.parent.groupId} ${project.parent.artifactId}-api true - **\/*.xml,**\/*.properties + **/* ${project.build.directory}/classes - - org.apache.maven.plugins - maven-surefire-plugin - 2.6 - - -Xmx512m -XX:MaxPermSize=512m -Djdk.net.URLClassPath.disableClassPathURLCheck=true - - **/*Test.java - - - ${project.parent.groupId}:${project.parent.artifactId}-api-1.10 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.11 - - - + + org.apache.maven.plugins + maven-surefire-plugin + 2.6 + + -Xmx512m -XX:MaxPermSize=512m -Djdk.net.URLClassPath.disableClassPathURLCheck=true + + **/*Test.java + **/*_IT.java + + + - - - MRS1.9 - - 1.9.9 - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - - - - - - org.apache.maven.plugins - maven-surefire-plugin - 2.6 - - -Xmx512m -XX:MaxPermSize=512m -Djdk.net.URLClassPath.disableClassPathURLCheck=true - - **/*Test.java - - - ${project.parent.groupId}:${project.parent.artifactId}-api-1.10 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.11 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.12 - - - - - - - - MRS1.10 - - false - - - 1.10.0 - - - - - - org.apache.maven.plugins - maven-surefire-plugin - 2.6 - - -Xmx512m -XX:MaxPermSize=512m -Djdk.net.URLClassPath.disableClassPathURLCheck=true - - **/*_1_10_Test.java - - - ${project.parent.groupId}:${project.parent.artifactId}-api-1.9 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.11 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.12 - ${project.parent.groupId}:${project.parent.artifactId}-fhir-condition - - - - - - - - MRS1.11 - - true - - - 1.11.5 - - - - - - org.apache.maven.plugins - maven-surefire-plugin - 2.6 - - -Xmx512m -XX:MaxPermSize=512m -Djdk.net.URLClassPath.disableClassPathURLCheck=true - - **/*_1_11_Test.java - - - ${project.parent.groupId}:${project.parent.artifactId}-api-1.9 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.10 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.12 - ${project.parent.groupId}:${project.parent.artifactId}-web-2.2 - ${project.parent.groupId}:${project.parent.artifactId}-fhir-condition - - - - - - - - MRS1.12 - - false - - - 1.12.0 - - - - - - org.apache.maven.plugins - maven-surefire-plugin - 2.6 - - -Xmx512m -XX:MaxPermSize=512m -Djdk.net.URLClassPath.disableClassPathURLCheck=true - - **/*_1_12_Test.java - - - ${project.parent.groupId}:${project.parent.artifactId}-api-1.9 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.10 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.11 - - - - - - - - MRS2.0 - - 2.0.6 - 1.9.13 - reporting-api-2.0 - - - - - - org.apache.maven.plugins - maven-surefire-plugin - 2.6 - - -Xmx512m -XX:MaxPermSize=512m -Djdk.net.URLClassPath.disableClassPathURLCheck=true - - **/*_2_0_Test.java - **/*_2_0_IT.java - - - ${project.parent.groupId}:${project.parent.artifactId}-api-1.9 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.10 - ${project.parent.groupId}:${project.parent.artifactId}-api-1.11 - - - - - - - diff --git a/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResource.java b/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResource.java index 6f6c085b4..4e3739a80 100644 --- a/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResource.java +++ b/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResource.java @@ -32,7 +32,7 @@ import java.util.List; import java.util.Map; -@Resource(name = RestConstants.VERSION_1 + "/patientprofile", supportedClass = PatientProfile.class, supportedOpenmrsVersions = {"1.9.*", "1.10.*", "1.11.*", "1.12.*", "2.0.*", "2.1.*", "2.2.*", "2.3.*", "2.4.*", "2.5.*"}) +@Resource(name = RestConstants.VERSION_1 + "/patientprofile", supportedClass = PatientProfile.class, supportedOpenmrsVersions = { "2.2 - 9.*" }) public class PatientProfileResource extends DelegatingCrudResource { @Override @@ -92,16 +92,18 @@ public Object create(SimpleObject propertiesToCreate, RequestContext context) th private List getRelationships(SimpleObject propertiesToCreate, Person currentPerson) { Object relationshipsList = propertiesToCreate.get("relationships"); List relationships = new ArrayList(); - List> relationshipProperties = (List>) relationshipsList; - for (final Map relationshipProperty : relationshipProperties) { - String uuid = getValueFromMap(relationshipProperty, "uuid"); - Relationship relationship; - if (StringUtils.isBlank(uuid)) { - relationship = createRelationship(currentPerson, relationshipProperty); - } else { - relationship = updateRelationship(relationshipProperty); + if (relationshipsList != null) { + List> relationshipProperties = (List>) relationshipsList; + for (final Map relationshipProperty : relationshipProperties) { + String uuid = getValueFromMap(relationshipProperty, "uuid"); + Relationship relationship; + if (StringUtils.isBlank(uuid)) { + relationship = createRelationship(currentPerson, relationshipProperty); + } else { + relationship = updateRelationship(relationshipProperty); + } + relationships.add(relationship); } - relationships.add(relationship); } return relationships; } diff --git a/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PersonImageResource.java b/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PersonImageResource.java index eee47d6da..e2d89dbf4 100644 --- a/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PersonImageResource.java +++ b/omod/src/main/java/org/openmrs/module/emrapi/rest/resource/PersonImageResource.java @@ -24,7 +24,7 @@ import java.util.Arrays; import java.util.List; -@Resource(name = RestConstants.VERSION_1 + "/personimage", supportedClass = PersonImage.class, supportedOpenmrsVersions = {"1.9.*", "1.10.*", "1.11.*", "1.12.*", "2.0.*", "2.1.*", "2.2.*", "2.3.*", "2.4.*", "2.5.*"}) +@Resource(name = RestConstants.VERSION_1 + "/personimage", supportedClass = PersonImage.class, supportedOpenmrsVersions = { "2.2 - 9.*" }) public class PersonImageResource extends DelegatingCrudResource { @Override diff --git a/web-2.2/src/main/java/org/openmrs/module/emrapi/web/controller/ConditionController.java b/omod/src/main/java/org/openmrs/module/emrapi/web/controller/ConditionController.java similarity index 100% rename from web-2.2/src/main/java/org/openmrs/module/emrapi/web/controller/ConditionController.java rename to omod/src/main/java/org/openmrs/module/emrapi/web/controller/ConditionController.java diff --git a/omod/src/main/java/org/openmrs/module/emrapi/web/controller/MigrateDiagnosisController.java b/omod/src/main/java/org/openmrs/module/emrapi/web/controller/MigrateDiagnosisController.java index bfab9ff79..477bc62d3 100644 --- a/omod/src/main/java/org/openmrs/module/emrapi/web/controller/MigrateDiagnosisController.java +++ b/omod/src/main/java/org/openmrs/module/emrapi/web/controller/MigrateDiagnosisController.java @@ -13,7 +13,7 @@ import org.springframework.web.bind.annotation.RequestMapping; import org.springframework.web.bind.annotation.RequestMethod; -import openmrs.module.emrapi.diagnosis.MigrateDiagnosis; +import org.openmrs.module.emrapi.diagnosis.MigrateDiagnosis; @Controller public class MigrateDiagnosisController { diff --git a/omod/src/main/resources/config.xml b/omod/src/main/resources/config.xml index 2728cdd5e..34185fe18 100644 --- a/omod/src/main/resources/config.xml +++ b/omod/src/main/resources/config.xml @@ -12,15 +12,13 @@ ${project.parent.description} https://modules.openmrs.org/modules/download/${project.parent.artifactId}/update.rdf - 1.11.3, 1.10.2 - 1.10.*, 1.9.9 - 1.9.* - - + ${openMRSVersion} - org.openmrs.module.fhir2 + org.openmrs.module.legacyui org.openmrs.module.metadatasharing - + org.openmrs.module.reporting org.openmrs.module.providermanagement @@ -28,56 +26,7 @@ org.openmrs.event org.openmrs.module.webservices.rest - - - - - - /lib/emrapi-api-1.12-${project.parent.version}.jar - 1.12.0 - 2.* - - - /lib/emrapi-api-1.11-${project.parent.version}.jar - 1.11.* - - - /lib/emrapi-api-1.10-${project.parent.version}.jar - 1.10.* - - - /lib/emrapi-api-1.9-${project.parent.version}.jar - 1.9.* - - - /lib/emrapi-api-2.2-${project.parent.version}.jar - 2.2.* - 2.* - - - /lib/emrapi-api-pre2.2-${project.parent.version}.jar - 1.9.* - 2.1.* - - - /lib/emrapi-web-pre2.2-${project.parent.version}.jar - 1.9.* - 2.1.* - - - /lib/emrapi-web-2.2-${project.parent.version}.jar - 2.2.* - 2.* - - - /lib/emrapi-fhir-condition-${project.parent.version}.jar - - - fhir2 - 1.* - - - 2.0.5 - 2.1.* - - - - - + ${project.parent.groupId}.${project.parent.artifactId}.EmrApiActivator @@ -107,7 +56,7 @@ org.openmrs.admin.list ${project.parent.groupId}.${project.parent.artifactId}.extension.html.AdminList - + emr.encounterMatcher diff --git a/omod/src/test/java/org/openmrs/module/emrapi/EmrEncounterServiceImp_2_0_IT.java b/omod/src/test/java/org/openmrs/module/emrapi/EmrEncounterServiceImpIT.java similarity index 94% rename from omod/src/test/java/org/openmrs/module/emrapi/EmrEncounterServiceImp_2_0_IT.java rename to omod/src/test/java/org/openmrs/module/emrapi/EmrEncounterServiceImpIT.java index d01a42ed4..59095f7f3 100644 --- a/omod/src/test/java/org/openmrs/module/emrapi/EmrEncounterServiceImp_2_0_IT.java +++ b/omod/src/test/java/org/openmrs/module/emrapi/EmrEncounterServiceImpIT.java @@ -7,7 +7,6 @@ import org.openmrs.api.context.Context; import org.openmrs.module.emrapi.encounter.EmrEncounterService; import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.test.BaseModuleContextSensitiveTest; import org.openmrs.web.test.BaseModuleWebContextSensitiveTest; import org.springframework.beans.factory.annotation.Autowired; @@ -17,8 +16,7 @@ import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; -@org.springframework.test.context.ContextConfiguration(locations = {"classpath:moduleApplicationContext.xml"}, inheritLocations = true) -public class EmrEncounterServiceImp_2_0_IT extends BaseModuleWebContextSensitiveTest{ +public class EmrEncounterServiceImpIT extends BaseModuleWebContextSensitiveTest{ @Autowired private EmrEncounterService emrEncounterService; diff --git a/omod/src/test/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResource_1_9_Test.java b/omod/src/test/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResourceTest.java similarity index 85% rename from omod/src/test/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResource_1_9_Test.java rename to omod/src/test/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResourceTest.java index 334372e8a..9deb83f6f 100644 --- a/omod/src/test/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResource_1_9_Test.java +++ b/omod/src/test/java/org/openmrs/module/emrapi/rest/resource/PatientProfileResourceTest.java @@ -4,9 +4,7 @@ import org.junit.Assert; import org.junit.Before; -import org.junit.Ignore; import org.junit.Test; -import org.mockito.Mock; import org.openmrs.api.context.Context; import org.openmrs.module.emrapi.patient.PatientProfile; import org.openmrs.module.webservices.rest.SimpleObject; @@ -23,7 +21,7 @@ import static org.junit.Assert.assertNull; import static org.mockito.Mockito.mock; -public class PatientProfileResource_1_9_Test extends BaseModuleWebContextSensitiveTest { +public class PatientProfileResourceTest extends BaseModuleWebContextSensitiveTest { private PatientProfileResource resource; @@ -42,8 +40,8 @@ public void shouldCreatePatient() throws Exception { Assert.assertEquals("id-B - Ram Kabir", ((Map) created.get("patient")).get("display")); List relationships = (List)created.get("relationships"); Assert.assertEquals(1,relationships.size()); - Assert.assertEquals("72d3bdef-fee5-11e4-b9a3-005056823b95",((Map)(((Map)relationships.get(0)).get("personB"))).get("uuid")); - Assert.assertEquals("8d919b58-c2cc-11de-8d13-0010c6dffd0f",((Map)(((Map)relationships.get(0)).get("relationshipType"))).get("uuid")); + Assert.assertEquals("ba1b19c2-3ed6-4f63-b8c0-f762dc8d7562",((Map)(((Map)relationships.get(0)).get("personB"))).get("uuid")); + Assert.assertEquals("6d9002ea-a96b-4889-af78-82d48c57a110",((Map)(((Map)relationships.get(0)).get("relationshipType"))).get("uuid")); } @Test diff --git a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/BaseEmrControllerTest.java b/omod/src/test/java/org/openmrs/module/emrapi/web/controller/BaseEmrControllerTest.java deleted file mode 100644 index 956b901d2..000000000 --- a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/BaseEmrControllerTest.java +++ /dev/null @@ -1,154 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.web.controller; - -import org.codehaus.jackson.map.ObjectMapper; -import org.codehaus.jackson.type.TypeReference; -import org.junit.Assert; -import org.openmrs.web.test.BaseModuleWebContextSensitiveTest; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.mock.web.MockHttpServletRequest; -import org.springframework.mock.web.MockHttpServletResponse; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.servlet.HandlerExecutionChain; -import org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAdapter; -import org.springframework.web.servlet.mvc.annotation.DefaultAnnotationHandlerMapping; - -import javax.servlet.http.HttpServletRequest; -import java.util.List; - -public abstract class BaseEmrControllerTest extends BaseModuleWebContextSensitiveTest { - - @Autowired - private AnnotationMethodHandlerAdapter handlerAdapter; - - @Autowired - private List handlerMappings; - - private ObjectMapper objectMapper = new ObjectMapper(); - - /** - * Creates a request from the given parameters. - *

- * The requestURI is automatically preceded with "/rest/" + RestConstants.VERSION_1. - * - * @param method - * @param requestURI - * @return - */ - public MockHttpServletRequest request(RequestMethod method, String requestURI) { - MockHttpServletRequest request = new MockHttpServletRequest(method.toString(), requestURI); - request.addHeader("content-type", "application/json"); - return request; - } - - public static class Parameter { - - public String name; - - public String value; - - public Parameter(String name, String value) { - this.name = name; - this.value = value; - } - } - - public MockHttpServletRequest newRequest(RequestMethod method, String requestURI, Parameter... parameters) { - MockHttpServletRequest request = request(method, requestURI); - for (Parameter parameter : parameters) { - request.addParameter(parameter.name, parameter.value); - } - return request; - } - - public MockHttpServletRequest newDeleteRequest(String requestURI, Parameter... parameters) { - return newRequest(RequestMethod.DELETE, requestURI, parameters); - } - - public MockHttpServletRequest newGetRequest(String requestURI, Parameter... parameters) { - return newRequest(RequestMethod.GET, requestURI, parameters); - } - - public MockHttpServletRequest newPostRequest(String requestURI, Object content) { - MockHttpServletRequest request = request(RequestMethod.POST, requestURI); - try { - String json = new ObjectMapper().writeValueAsString(content); - request.setContent(json.getBytes("UTF-8")); - } - catch (Exception e) { - throw new RuntimeException(e); - } - return request; - } - - public MockHttpServletRequest newPostRequest(String requestURI, String content) { - MockHttpServletRequest request = request(RequestMethod.POST, requestURI); - try { - request.setContent(content.getBytes("UTF-8")); - } - catch (Exception e) { - throw new RuntimeException(e); - } - return request; - } - - /** - * Passes the given request to a proper controller. - * - * @param request - * @return - * @throws Exception - */ - public MockHttpServletResponse handle(HttpServletRequest request) throws Exception { - MockHttpServletResponse response = new MockHttpServletResponse(); - - HandlerExecutionChain handlerExecutionChain = null; - for (DefaultAnnotationHandlerMapping handlerMapping : handlerMappings) { - handlerExecutionChain = handlerMapping.getHandler(request); - if (handlerExecutionChain != null) { - break; - } - } - Assert.assertNotNull("The request URI does not exist", handlerExecutionChain); - - handlerAdapter.handle(request, response, handlerExecutionChain.getHandler()); - - return response; - } - - /** - * Deserializes the JSON response. - * - * @param response - * @param type - * @return - * @throws Exception - */ - public T deserialize(MockHttpServletResponse response, Class type) throws Exception { - return objectMapper.readValue(response.getContentAsString(), type); - } - - /** - * Deserializes the JSON response. - * - * @param response - * @param typeReference - * @return - * @throws Exception - */ - public T deserialize(MockHttpServletResponse response, final TypeReference typeReference) throws Exception { - return objectMapper.readValue(response.getContentAsString(), typeReference); - } -} diff --git a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrConceptSearchControllerTest.java b/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrConceptSearchControllerTest.java index 6490cbc21..b9b95c47e 100644 --- a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrConceptSearchControllerTest.java +++ b/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrConceptSearchControllerTest.java @@ -1,7 +1,5 @@ package org.openmrs.module.emrapi.web.controller; -import org.apache.poi.util.SystemOutLogger; -import org.codehaus.jackson.type.TypeReference; import org.junit.Assert; import org.junit.Before; import org.junit.Test; @@ -9,9 +7,9 @@ import org.openmrs.api.ConceptService; import org.openmrs.module.emrapi.EmrApiProperties; import org.openmrs.module.webservices.rest.SimpleObject; +import org.openmrs.web.test.BaseModuleWebContextSensitiveTest; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Qualifier; -import org.springframework.mock.web.MockHttpServletRequest; import java.util.ArrayList; import java.util.List; @@ -20,12 +18,14 @@ import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNull; -@org.springframework.test.context.ContextConfiguration(locations = {"classpath:moduleApplicationContext.xml"}, inheritLocations = true) -public class EmrConceptSearchControllerTest extends BaseEmrControllerTest { +public class EmrConceptSearchControllerTest extends BaseModuleWebContextSensitiveTest { @Autowired EmrApiProperties emrApiProperties; + @Autowired + EmrConceptSearchController conceptSearchController; + @Autowired @Qualifier("conceptService") private ConceptService cs; @@ -38,14 +38,14 @@ public void setUp() throws Exception { @Test public void shouldSearchByName() throws Exception { - List response = deserialize(handle(newGetRequest("/rest/emrapi/concept",new Parameter[]{new Parameter("term", "Diabetes"), new Parameter("limit", "100")})), new TypeReference() {}); + List response = (List)conceptSearchController.search("Diabetes", 100, null); assertEquals(2, response.size()); } @Test public void shouldSearchByCodeExact() throws Exception { - List response = deserialize(handle(newGetRequest("/rest/emrapi/concept",new Parameter[]{new Parameter("term", "ABC123"), new Parameter("limit", "100")})), new TypeReference() {}); + List response = (List)conceptSearchController.search("ABC123", 100, null); assertEquals(1, response.size()); assertEquals("Diabetes", ((Map)response.get(0)).get("conceptName")); Map diagnosisResponse = response.get(0); @@ -58,7 +58,7 @@ public void shouldSearchByCodeExact() throws Exception { @Test public void shouldNotDoLikeSearchByCode() throws Exception { - List response = deserialize(handle(newGetRequest("/rest/emrapi/concept",new Parameter[]{new Parameter("term", "ABC12"), new Parameter("limit", "100")})), new TypeReference() {}); + List response = (List)conceptSearchController.search("ABC12", 100, null); assertEquals(0, response.size()); } @@ -72,9 +72,7 @@ public void shouldHandleEmptyListOfDiagnosesConceptSource() throws Exception { Assert.assertNotNull(emrApiProperties.getConceptSourcesForDiagnosisSearch()); Assert.assertEquals(0, emrApiProperties.getConceptSourcesForDiagnosisSearch().size()); - MockHttpServletRequest getRequest = newGetRequest("/rest/emrapi/concept",new Parameter[]{new Parameter("term", "Diabetes"), new Parameter("limit", "100")}); - @SuppressWarnings("unchecked") - List response = deserialize(handle(getRequest), new TypeReference() {}); + List response = (List)conceptSearchController.search("Diabetes", 100, null); Assert.assertEquals(2, response.size()); List actualUuids = new ArrayList(); @@ -90,7 +88,7 @@ public void shouldHandleEmptyListOfDiagnosesConceptSource() throws Exception { Assert.assertNotNull(emrApiProperties.getConceptSourcesForDiagnosisSearch()); Assert.assertEquals(1, emrApiProperties.getConceptSourcesForDiagnosisSearch().size()); - response = deserialize(handle(getRequest), new TypeReference() {}); + response = (List)conceptSearchController.search("Diabetes", 100, null); Assert.assertEquals(2, response.size()); List expectedUuids = new ArrayList(); @@ -102,5 +100,4 @@ public void shouldHandleEmptyListOfDiagnosesConceptSource() throws Exception { //both lists shall have the same concepts identified by the unique UUID. Assert.assertArrayEquals(expectedUuids.toArray(), actualUuids.toArray()); } - } diff --git a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrEncounterController_1_10_Test.java b/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrEncounterController_1_10_Test.java deleted file mode 100644 index da697e3c3..000000000 --- a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrEncounterController_1_10_Test.java +++ /dev/null @@ -1,238 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.web.controller; - -import org.codehaus.jackson.type.TypeReference; -import org.junit.*; -import org.openmrs.*; -import org.openmrs.api.*; -import org.openmrs.module.emrapi.encounter.domain.*; -import org.springframework.beans.factory.annotation.*; - -import java.util.*; - -import static org.junit.Assert.*; - -@org.springframework.test.context.ContextConfiguration(locations = {"classpath:moduleApplicationContext.xml"}, inheritLocations = true) -public class EmrEncounterController_1_10_Test extends BaseEmrControllerTest { - - @Autowired - private EncounterService encounterService; - - - @Test - public void shouldAddDrugOrder() throws Exception { - executeDataSet("shouldAddNewDrugOrder.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", \n" + - " \"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", \n" + - " \"encounterDateTime\" : \"2011-05-01T12:10:06.000+0530\", \n" + - " \"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\",\n" + - " \"providers\" : [{ \n" + - " \n" + - " \"uuid\":\"331c6bf8-7846-11e3-a96a-0800271c1b75\"\n" + - " }],\n" + - " \"drugOrders\" : [{ " + - " \"careSetting\":\"OUTPATIENT\",\n" + - " \"drug\":{ \n" + - " \"name\":\"Paracetamol\"\n" + - " },\n" + - " \"dosingInstructionsType\":\"org.openmrs.SimpleDosingInstructions\",\n" + - " \"dosingInstructions\":{ \n" + - " \"dose\":2,\n" + - " \"doseUnits\":\"tab (s)\",\n" + - " \"route\":\"PO\",\n" + - " \"frequency\":\"QD\",\n" + - " \"asNeeded\":false,\n" + - " \"administrationInstructions\": \"AC\",\n" + - " \"quantity\":16,\n" + - " \"quantityUnits\": \"tab (s)\",\n" + - " \"numRefills\":0\n" + - " },\n" + - " \"duration\": \"1\",\n" + - " \"durationUnits\": \"Day(s)\",\n" + - " \"scheduledDate\":\"2013-12-02T12:27:32.518Z\",\n" + - " \"endDate\":\"2014-12-04T12:27:32.518Z\",\n" + - " \"action\":\"NEW\"\n" + - " }]\n" + - "}"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - assertNotNull(response); - Set savedDrugOrders = encounterService.getEncounterByUuid("f13d6fae-baa9-4553-955d-920098bec08f").getOrders(); - assertEquals(1, savedDrugOrders.size()); - } - - - @Test - public void shouldRespectDrugUuidIfProvidedWhileAddingDrugs() throws Exception { - executeDataSet("shouldAddNewDrugOrder.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", \n" + - " \"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", \n" + - " \"encounterDateTime\" : \"2011-05-01T12:10:06.000+0530\", \n" + - " \"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\",\n" + - " \"providers\" : [{ \n" + - " \n" + - " \"uuid\":\"331c6bf8-7846-11e3-a96a-0800271c1b75\"\n" + - " }],\n" + - " \"drugOrders\" : [{ " + - " \"careSetting\":\"OUTPATIENT\",\n" + - " \"drug\":{ \n" + - " \"uuid\":\"4d6fb6e0-4950-426c-9a9b-1f97e6037893\"\n" + - " },\n" + - " \"dosingInstructionsType\":\"org.openmrs.SimpleDosingInstructions\",\n" + - " \"dosingInstructions\":{ \n" + - " \"dose\":2,\n" + - " \"doseUnits\":\"tab (s)\",\n" + - " \"route\":\"PO\",\n" + - " \"frequency\":\"QD\",\n" + - " \"asNeeded\":false,\n" + - " \"administrationInstructions\": \"AC\",\n" + - " \"quantity\":16,\n" + - " \"quantityUnits\": \"tab (s)\",\n" + - " \"numRefills\":0\n" + - " },\n" + - " \"duration\": \"1\",\n" + - " \"durationUnits\": \"Day(s)\",\n" + - " \"scheduledDate\":\"2013-12-02T12:27:32.518Z\",\n" + - " \"endDate\":\"2014-12-04T12:27:32.518Z\",\n" + - " \"action\":\"NEW\"\n" + - " }]\n" + - "}"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - assertNotNull(response); - Set savedDrugOrders = encounterService.getEncounterByUuid("f13d6fae-baa9-4553-955d-920098bec08f").getOrders(); - assertEquals(1, savedDrugOrders.size()); - } - - - @Test - public void shouldReviseDrugOrder() throws Exception{ - - executeDataSet("shouldReviseDrugOrder.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", \n" + - " \"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", \n" + - " \"encounterDateTime\" : \"2011-05-01T12:10:06.000+0530\", \n" + - " \"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\",\n" + - " \"providers\" : [{ \n" + - " \n" + - " \"uuid\":\"331c6bf8-7846-11e3-a96a-0800271c1b75\"\n" + - " }],\n" + - " \"drugOrders\" : [{ \n" + - " \"careSetting\":\"OUTPATIENT\",\n" + - " \"previousOrderUuid\":\"0c96f25c-4949-4f72-9931-d808fbcdbbbb\",\n" + - " \"dosingInstructionsType\":\"org.openmrs.SimpleDosingInstructions\",\n" + - " \"dosingInstructions\":{ \n" + - " \"dose\":4,\n" + - " \"doseUnits\":\"tab (s)\",\n" + - " \"route\":\"PO\",\n" + - " \"frequency\":\"QD\",\n" + - " \"asNeeded\":false,\n" + - " \"administrationInstructions\": \"AC\",\n" + - " \"quantity\":160,\n" + - " \"quantityUnits\": \"tab (s)\",\n" + - " \"numRefills\":0\n" + - " },\n" + - " \"duration\": \"5\",\n" + - " \"durationUnits\": \"Day(s)\",\n" + - " \"endDate\":\"2099-12-04T12:27:32.518Z\",\n" + - " \"action\":\"REVISE\"\n" + - " }]\n" + - "}"; - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - assertNotNull(response); - Set savedDrugOrders = encounterService.getEncounterByUuid("f13d6fae-baa9-4553-955d-920098bec08f").getOrders(); - assertEquals(2, savedDrugOrders.size()); - } - - - @Test - public void shouldDiscontinueDrugOrder() throws Exception{ - - executeDataSet("shouldReviseDrugOrder.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", \n" + - " \"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", \n" + - " \"encounterDateTime\" : \"2011-05-01T12:10:06.000+0530\", \n" + - " \"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\",\n" + - " \"providers\" : [{ \n" + - " \n" + - " \"uuid\":\"331c6bf8-7846-11e3-a96a-0800271c1b75\"\n" + - " }],\n" + - " \"drugOrders\" : [{ \n" + - " \"careSetting\":\"OUTPATIENT\",\n" + - " \"previousOrderUuid\":\"0c96f25c-4949-4f72-9931-d808fbcdbbbb\",\n" + - " \"dosingInstructionsType\":\"org.openmrs.SimpleDosingInstructions\",\n" + - " \"dosingInstructions\":{ \n" + - " \"dose\":4,\n" + - " \"doseUnits\":\"tab (s)\",\n" + - " \"route\":\"PO\",\n" + - " \"frequency\":\"QD\",\n" + - " \"asNeeded\":false,\n" + - " \"administrationInstructions\": \"AC\",\n" + - " \"quantity\":160,\n" + - " \"quantityUnits\": \"tab (s)\",\n" + - " \"numRefills\":0\n" + - " },\n" + - " \"duration\": \"5\",\n" + - " \"durationUnits\": \"Day(s)\",\n" + - " \"endDate\":\"2099-12-04T12:27:32.518Z\",\n" + - " \"action\":\"DISCONTINUE\"\n" + - " }]\n" + - "}"; - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - assertNotNull(response); - Set savedDrugOrders = encounterService.getEncounterByUuid("f13d6fae-baa9-4553-955d-920098bec08f").getOrders(); - assertEquals(2, savedDrugOrders.size()); - - List actions = new ArrayList(); - for (Order savedDrugOrder : savedDrugOrders) { - actions.add(savedDrugOrder.getAction().name()); - } - assertEquals(2, actions.size()); - assertTrue(actions.contains("NEW")); - assertTrue(actions.contains("DISCONTINUE")); - } - - - @Test - public void shouldGetEncounterTransactionForEncounterUuid() throws Exception { - executeDataSet("baseMetaData.xml"); - executeDataSet("dispositionMetaData.xml"); - executeDataSet("diagnosisMetaData.xml"); - executeDataSet("shouldGetEncounterTransactionByDate.xml"); - - String firstEncounter = "{" + - "\"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"encounterTypeUuid\": \"4f3c2244-9d6a-439e-b88a-6e8873489ea7\", " + - "\"encounterDateTime\" : \"2004-01-01T10:00:00.000+0000\" " + - "}"; - EncounterTransaction encounter1Response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", firstEncounter)), EncounterTransaction.class); - String encounterUuid = encounter1Response.getEncounterUuid(); - - EncounterTransaction encounterTransaction = deserialize(handle(newGetRequest("/rest/emrapi/encounter/" + encounterUuid, - new Parameter[]{new Parameter("includeAll", "false")})), new TypeReference() { - }); - - assertNotNull(encounterTransaction); - } -} diff --git a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrEncounterController_1_11_Test.java b/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrEncounterController_1_11_Test.java deleted file mode 100644 index 232607335..000000000 --- a/omod/src/test/java/org/openmrs/module/emrapi/web/controller/EmrEncounterController_1_11_Test.java +++ /dev/null @@ -1,407 +0,0 @@ -/** - * The contents of this file are subject to the OpenMRS Public License - * Version 1.0 (the "License"); you may not use this file except in - * compliance with the License. You may obtain a copy of the License at - * http://license.openmrs.org - * - * Software distributed under the License is distributed on an "AS IS" - * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the - * License for the specific language governing rights and limitations - * under the License. - * - * Copyright (C) OpenMRS, LLC. All Rights Reserved. - */ -package org.openmrs.module.emrapi.web.controller; - -import org.apache.commons.lang3.time.DateUtils; -import org.codehaus.jackson.type.TypeReference; -import org.junit.Ignore; -import org.junit.Test; -import org.openmrs.*; -import org.openmrs.api.ObsService; -import org.openmrs.api.VisitService; -import org.openmrs.module.emrapi.encounter.domain.EncounterTransaction; -import org.openmrs.module.emrapi.encounter.exception.EncounterMatcherNotFoundException; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.mock.web.MockHttpServletResponse; - -import java.text.SimpleDateFormat; -import java.util.*; - -import static org.junit.Assert.*; - -@org.springframework.test.context.ContextConfiguration(locations = {"classpath:moduleApplicationContext.xml"}, inheritLocations = true) -public class EmrEncounterController_1_11_Test extends BaseEmrControllerTest { - - @Autowired - private VisitService visitService; - @Autowired - private ObsService obsService; - private String dateTimeFormat = "yyyy-MM-dd'T'HH:mm:ss.SSSZ"; - - - @Test - public void shouldCreateVisitWhenNoVisitsAreActive() throws Exception { - executeDataSet("shouldCreateVisitWhenNoVisitsAreActive.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", \"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\"," + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\" }"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - Visit visit = visitService.getVisitByUuid(response.getVisitUuid()); - assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", visit.getPatient().getUuid()); - assertEquals("b45ca846-c79a-11e2-b0c0-8e397087571c", visit.getVisitType().getUuid()); - } - - - @Test - public void shouldCreateNewEncounter() throws Exception { - executeDataSet("shouldCreateMatchingEncounter.xml"); - - String encounterDateTimeString = "2011-05-01T12:10:06.000+0530"; - Date encounterDateTime = new SimpleDateFormat(dateTimeFormat).parse(encounterDateTimeString); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"encounterDateTime\" : \"" + encounterDateTimeString + "\", " + - "\"visitLocationUuid\": \"f1771d8e-bf1f-4dc5-957f-0d40a5eebf08\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\" }"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - assertEquals("1e5d5d48-6b78-11e0-93c3-18a905e044dc", response.getVisitUuid()); - - Visit visit = visitService.getVisitByUuid(response.getVisitUuid()); - assertEquals(1, visit.getEncounters().size()); - Encounter encounter = visit.getEncounters().iterator().next(); - - assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", encounter.getPatient().getUuid()); - assertEquals("2b377dba-62c3-4e53-91ef-b51c68899890", encounter.getEncounterType().getUuid()); - assertEquals(encounterDateTime, encounter.getEncounterDatetime()); - } - - - @Test - public void shouldUpdateMatchingEncounterWhenCustomMatchingStrategyIsProvided() throws Exception { - executeDataSet("shouldUpdateMatchingEncounterWhenCustomMatchingStrategyIsProvided.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\"," + - "\"visitLocationUuid\": \"f1771d8e-bf1f-4dc5-957f-0d40a5eebf08\" }"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - assertEquals("f13d6fae-baa9-4553-955d-920098bec08g", response.getEncounterUuid()); - } - - - @Test(expected = EncounterMatcherNotFoundException.class) - public void shouldReturnErrorWhenInvalidMatchingStrategyIsProvided() throws Exception { - executeDataSet("shouldReturnErrorWhenInvalidMatchingStrategyIsProvided.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\" }"; - - handle(newPostRequest("/rest/emrapi/encounter", json)); - } - - - @Test - public void shouldAddNewObservation() throws Exception { - executeDataSet("shouldAddNewObservation.xml"); - String encounterDateTime = "2005-01-02T00:00:00.000+0000"; - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"visitLocationUuid\": \"f1771d8e-bf1f-4dc5-957f-0d40a5eebf08\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", " + - "\"encounterDateTime\" : \"" + encounterDateTime + "\", " + - "\"observations\":[" + - "{\"concept\": {\"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"conceptName\":\"Should be Ignored\", \"value\":20}, " + - "{\"concept\": {\"uuid\": \"8f8e7340-a067-11e3-a5e2-0800200c9a66\"}, \"value\": {\"uuid\": \"e7167090-a067-11e3-a5e2-0800200c9a66\"}}, " + - "{\"concept\": {\"uuid\": \"e102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"value\":\"text value\", \"comment\":\"overweight\"}]}"; - - MockHttpServletResponse response1 = handle(newPostRequest("/rest/emrapi/encounter", json)); - - EncounterTransaction response = deserialize(response1, EncounterTransaction.class); - - Visit visit = visitService.getVisitByUuid(response.getVisitUuid()); - Encounter encounter = visit.getEncounters().iterator().next(); - - assertEquals(3, encounter.getObs().size()); - Iterator obsIterator = encounter.getObs().iterator(); - - Map map = new HashMap (); - while (obsIterator.hasNext()) { - Obs obs = obsIterator.next(); - map.put(obs.getConcept().getDatatype().getHl7Abbreviation(), obs); - } - Obs textObservation = map.get(ConceptDatatype.TEXT); - assertEquals("text value", textObservation.getValueText()); - assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", textObservation.getPerson().getUuid()); - assertEquals("e102c80f-1yz9-4da3-bb88-8122ce8868dd", textObservation.getConcept().getUuid()); - assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", textObservation.getEncounter().getUuid()); - assertEquals("overweight", textObservation.getComment()); -// TODO : change the observation startTime logic to take current time as start time when startTime is not passed by the client -// assertEquals(DateUtils.parseDate(encounterDateTime, dateTimeFormat), textObservation.getObsDatetime()); - - assertEquals("e7167090-a067-11e3-a5e2-0800200c9a66", map.get(ConceptDatatype.CODED).getValueCoded().getUuid()); - assertEquals(new Double(20.0), map.get(ConceptDatatype.NUMERIC).getValueNumeric()); - } - - - @Test - public void shouldAddNewObservationGroup() throws Exception { - executeDataSet("shouldAddNewObservation.xml"); - String encounterDateTime = "2005-01-02T00:00:00.000+0000"; - String observationTime = "2005-01-02T12:00:00.000+0000"; - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"visitLocationUuid\": \"f1771d8e-bf1f-4dc5-957f-0d40a5eebf08\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", " + - "\"encounterDateTime\" : \"" + encounterDateTime + "\", " + - "\"observations\":[" + - "{\"concept\":{\"uuid\": \"e102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, " + - " \"groupMembers\" : [{\"concept\":{\"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"value\":20, \"comment\":\"overweight\", \"observationDateTime\": \"" + observationTime + "\"}] }" + - "]}"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - Visit visit = visitService.getVisitByUuid(response.getVisitUuid()); - Encounter encounter = (Encounter) visit.getEncounters().toArray()[0]; - - assertEquals(1, encounter.getObs().size()); - Obs obs = (Obs) encounter.getAllObs().toArray()[0]; - assertEquals("e102c80f-1yz9-4da3-bb88-8122ce8868dd", obs.getConcept().getUuid()); - - assertEquals(1, obs.getGroupMembers().size()); - Obs member = obs.getGroupMembers().iterator().next(); - assertEquals("d102c80f-1yz9-4da3-bb88-8122ce8868dd", member.getConcept().getUuid()); - assertEquals(new Double(20.0), member.getValueNumeric()); - assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", member.getPerson().getUuid()); - assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", member.getEncounter().getUuid()); - assertEquals("overweight", member.getComment()); - assertEquals(new SimpleDateFormat(dateTimeFormat).parse(observationTime), member.getObsDatetime()); - } - - - @Test - public void shouldUpdateObservations() throws Exception { - executeDataSet("shouldUpdateObservations.xml"); - - String json = "{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"visitLocationUuid\": \"f1771d8e-bf1f-4dc5-957f-0d40a5eebf08\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\"," + - "\"encounterDateTime\" : \"2013-01-01T00:00:00.000+0000\", " + - "\"observations\":[" + - "{\"uuid\":\"z9fb7f47-e80a-4056-9285-bd798be13c63\", " + - " \"groupMembers\" : [{\"uuid\":\"ze48cdcb-6a76-47e3-9f2e-2635032f3a9a\", \"value\":20, \"comment\":\"new gc\" }] }, " + - "{\"uuid\":\"zf616900-5e7c-4667-9a7f-dcb260abf1de\", \"comment\" : \"new c\", \"value\":100 }" + - "]}"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class); - - Visit visit = visitService.getVisitByUuid(response.getVisitUuid()); - Encounter encounter = (Encounter) visit.getEncounters().toArray()[0]; - - Set obsAtTopLevel = encounter.getObsAtTopLevel(false); - assertEquals(2, obsAtTopLevel.size()); - - List allObsUuids = getAllObsUuids(obsAtTopLevel); - assertTrue(allObsUuids.contains("z9fb7f47-e80a-4056-9285-bd798be13c63")); - assertTrue(allObsUuids.contains("zf616900-5e7c-4667-9a7f-dcb260abf1de")); - - Obs obs1 = obsService.getObsByUuid("z9fb7f47-e80a-4056-9285-bd798be13c63"); - assertEquals(1, obs1.getGroupMembers().size()); - Obs member = obs1.getGroupMembers().iterator().next(); - assertEquals(new Double(20), member.getValueNumeric()); - assertEquals("new gc", member.getComment()); - - Obs obs2 = obsService.getObsByUuid("zf616900-5e7c-4667-9a7f-dcb260abf1de"); - assertEquals("zf616900-5e7c-4667-9a7f-dcb260abf1de", obs2.getUuid()); - assertEquals(new Double(100), obs2.getValueNumeric()); - assertEquals("new c", obs2.getComment()); - - } - - - @Test - public void shouldGetEncounterTransactionByDate() throws Exception { - executeDataSet("baseMetaData.xml"); - executeDataSet("dispositionMetaData.xml"); - executeDataSet("diagnosisMetaData.xml"); - executeDataSet("shouldGetEncounterTransactionByDate.xml"); - String dispositionDateTime = "2005-01-01T01:00:00.000+0000"; - String encounter1PostData = "{" + - "\"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"encounterTypeUuid\": \"4f3c2244-9d6a-439e-b88a-6e8873489ea7\", " + - "\"encounterDateTime\" : \"2004-01-01T10:00:00.000+0000\" " + - "}"; - EncounterTransaction encounter1Response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", encounter1PostData)), EncounterTransaction.class); - String cancerDiagnosisUuid = "d102c80f-1yz9-4da3-bb88-8122ce8868dh"; - String malariaDiagnosisUuid = "604dcce9-bcd9-48a8-b2f5-112743cf1db8"; - String visitUuid = encounter1Response.getVisitUuid(); - String encounter2PostData = "{" + - "\"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"visitUuid\": \"" + visitUuid + "\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899891\", " + - "\"encounterDateTime\" : \"2005-01-01T10:00:00.000+0000\", " + - "\"observations\":[" + - "{\"" + - "concept\":{\"uuid\": \"4f3c2244-9d6a-439e-b88a-6e8873489ea7\"}, " + - "\"groupMembers\" : [{\"concept\":{\"uuid\": \"82e5f23e-e0b3-4e53-b6bb-c09c1c7fb8b0\"}, \"value\":20, \"comment\":\"overweight\" }] " + - "}" + - "]," + - "\"diagnoses\":[" + - "{\"order\":\"PRIMARY\", \"certainty\": \"CONFIRMED\", \"codedAnswer\": { \"uuid\": \"" + cancerDiagnosisUuid + "\"} }," + - "{\"order\":\"PRIMARY\", \"certainty\": \"CONFIRMED\", \"codedAnswer\": { \"uuid\": \"" + malariaDiagnosisUuid + "\"} }" + - "], " + - "\"disposition\": {" + - " \"code\": \"ADMIT\"," + - " \"dispositionDateTime\": \"" + dispositionDateTime + "\"," + - " \"additionalObs\": [" + - " {" + - " \"value\": \"Admit him to ICU.\"," + - " \"concept\": {" + - " \"uuid\": \"9169366f-3c7f-11e3-8f4c-005056823ee5\"," + - " \"name\": \"Disposition Note\"" + - " }" + - " }" + - " ]" + - "}" + - "}"; - EncounterTransaction encounter2Response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", encounter2PostData)), EncounterTransaction.class); - assertEquals(encounter1Response.getVisitUuid(), encounter2Response.getVisitUuid()); - assertNotEquals(encounter1Response.getEncounterUuid(), encounter2Response.getEncounterUuid()); - - List encounterTransactions = deserialize(handle(newGetRequest("/rest/emrapi/encounter", - new Parameter[]{new Parameter("visitUuid", visitUuid), new Parameter("encounterDate", "2005-01-01"), - new Parameter("patientUuid", "a76e8d23-0c38-408c-b2a8-ea5540f01b51"), - new Parameter("visitTypeUuids", "b45ca846-c79a-11e2-b0c0-8e397087571c"), - new Parameter("encounterTypeUuids", "2b377dba-62c3-4e53-91ef-b51c68899891"), - new Parameter("includeAll", "false")})), new TypeReference>() {}); - - - assertEquals(1, encounterTransactions.size()); - EncounterTransaction fetchedEncounterTransaction = encounterTransactions.get(0); - assertEquals(visitUuid, fetchedEncounterTransaction.getVisitUuid()); - assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", fetchedEncounterTransaction.getPatientUuid()); - assertEquals("b45ca846-c79a-11e2-b0c0-8e397087571c", fetchedEncounterTransaction.getVisitTypeUuid()); - assertEquals("2b377dba-62c3-4e53-91ef-b51c68899891", fetchedEncounterTransaction.getEncounterTypeUuid()); - assertEquals("2005-01-01", new SimpleDateFormat("yyyy-MM-dd").format(fetchedEncounterTransaction.getEncounterDateTime())); - //Assert Observations - assertEquals(1, fetchedEncounterTransaction.getObservations().size()); - assertEquals("4f3c2244-9d6a-439e-b88a-6e8873489ea7", fetchedEncounterTransaction.getObservations().get(0).getConcept().getUuid()); - assertEquals(1, fetchedEncounterTransaction.getObservations().get(0).getGroupMembers().size()); - assertEquals("82e5f23e-e0b3-4e53-b6bb-c09c1c7fb8b0", fetchedEncounterTransaction.getObservations().get(0).getGroupMembers().get(0).getConcept().getUuid()); - assertEquals(20.0, fetchedEncounterTransaction.getObservations().get(0).getGroupMembers().get(0).getValue()); - //Assert Diagnosis data - assertEquals(2, fetchedEncounterTransaction.getDiagnoses().size()); - EncounterTransaction.Diagnosis cancerDiagnosis = getDiagnosisByUuid(fetchedEncounterTransaction.getDiagnoses(), cancerDiagnosisUuid); - assertNotNull(cancerDiagnosis); - assertEquals("PRIMARY", cancerDiagnosis.getOrder()); - assertEquals("CONFIRMED", cancerDiagnosis.getCertainty()); - assertEquals(cancerDiagnosisUuid, cancerDiagnosis.getCodedAnswer().getUuid()); - assertNotNull(getDiagnosisByUuid(fetchedEncounterTransaction.getDiagnoses(), malariaDiagnosisUuid)); - //Assert Disposition data - EncounterTransaction.Disposition fetchedDisposition = fetchedEncounterTransaction.getDisposition(); - assertEquals("ADMIT", fetchedDisposition.getCode()); - assertNotNull(fetchedDisposition.getExistingObs()); - assertEquals(1, fetchedDisposition.getAdditionalObs().size()); - assertEquals("Admit him to ICU.", fetchedDisposition.getAdditionalObs().get(0).getValue()); - assertEquals("Disposition Note", fetchedDisposition.getAdditionalObs().get(0).getConcept().getName()); - } - - private EncounterTransaction.Diagnosis getDiagnosisByUuid(List diagnoses, String diagnosisUuid) { - for (EncounterTransaction.Diagnosis diagnose : diagnoses) { - if(diagnose.getCodedAnswer().getUuid().equals(diagnosisUuid)) - return diagnose; - } - return null; - } - - - @Test - public void shouldAddDiagnosesAdObservation() throws Exception { - executeDataSet("baseMetaData.xml"); - executeDataSet("diagnosisMetaData.xml"); - executeDataSet("shouldAddDiagnosisAsObservation.xml"); - String cancerDiagnosisUuid = "d102c80f-1yz9-4da3-bb88-8122ce8868dh"; - String encounterDateTime = "2005-01-02T00:00:00.000+0000"; - String diagnosisDateTime = "2005-01-02T01:00:00.000+0000"; - String postData = "{" + - "\"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899891\", " + - "\"encounterDateTime\" : \"" + encounterDateTime + "\", " + - "\"diagnoses\":[" + - "{\"order\":\"PRIMARY\", \"certainty\": \"CONFIRMED\", \"codedAnswer\": { \"uuid\": \"" + cancerDiagnosisUuid + "\"}, \"diagnosisDateTime\": \""+ diagnosisDateTime + "\" }" + - "]" + - "}"; - - EncounterTransaction response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", postData)), EncounterTransaction.class); - - Visit visit = visitService.getVisitByUuid(response.getVisitUuid()); - Encounter encounter = visit.getEncounters().iterator().next(); - - Set obsAtTopLevel = encounter.getObsAtTopLevel(false); - assertEquals(1, obsAtTopLevel.size()); - Obs parentObservation = obsAtTopLevel.iterator().next(); - assertTrue(parentObservation.isObsGrouping()); - assertEquals(DateUtils.parseDate(diagnosisDateTime, dateTimeFormat), parentObservation.getObsDatetime()); - - Set diagnosisObservationGroupMembers = parentObservation.getGroupMembers(); - assertEquals(3, diagnosisObservationGroupMembers.size()); - ArrayList valueCodedNames = getValuCodedNames(diagnosisObservationGroupMembers); - assertTrue(valueCodedNames.contains("Confirmed")); - assertTrue(valueCodedNames.contains("Primary")); - assertTrue(valueCodedNames.contains("Cancer")); - } - - private ArrayList getValuCodedNames(Set diagnosisObservationGroupMembers) { - ArrayList valueCodedNames = new ArrayList(); - for (Obs diagnosisObservationGroupMember : diagnosisObservationGroupMembers) { - valueCodedNames.add(diagnosisObservationGroupMember.getValueCoded().getName().getName()); - } - return valueCodedNames; - } - - - @Test - public void shouldGetAllEncounterTransactionsWhenDateNotProvided() throws Exception { - executeDataSet("baseMetaData.xml"); - executeDataSet("dispositionMetaData.xml"); - executeDataSet("diagnosisMetaData.xml"); - executeDataSet("shouldGetEncounterTransactionByDate.xml"); - - String firstEncounter = "{" + - "\"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", " + - "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", " + - "\"encounterTypeUuid\": \"4f3c2244-9d6a-439e-b88a-6e8873489ea7\", " + - "\"encounterDateTime\" : \"2004-01-01T10:00:00.000+0000\" " + - "}"; - EncounterTransaction encounter1Response = deserialize(handle(newPostRequest("/rest/emrapi/encounter", firstEncounter)), EncounterTransaction.class); - String visitUuid = encounter1Response.getVisitUuid(); - - List encounterTransactions = deserialize(handle(newGetRequest("/rest/emrapi/encounter", - new Parameter[]{new Parameter("visitUuid", visitUuid), - new Parameter("patientUuid", "a76e8d23-0c38-408c-b2a8-ea5540f01b51"), - new Parameter("includeAll", "true")})), new TypeReference>() {}); - - assertEquals(1, encounterTransactions.size()); - } - - private List getAllObsUuids(Set obsAtTopLevel) { - ArrayList obsUuids = new ArrayList(); - for (Obs observation : obsAtTopLevel) { - obsUuids.add(observation.getUuid()); - } - return obsUuids; - } - -} diff --git a/omod/src/test/resources/create_patient_profile.json b/omod/src/test/resources/create_patient_profile.json index 604f4d3a6..3077f57fc 100644 --- a/omod/src/test/resources/create_patient_profile.json +++ b/omod/src/test/resources/create_patient_profile.json @@ -60,10 +60,10 @@ "relationships": [ { "personB":{ - "uuid": "72d3bdef-fee5-11e4-b9a3-005056823b95" + "uuid": "ba1b19c2-3ed6-4f63-b8c0-f762dc8d7562" }, "relationshipType": { - "uuid" : "8d919b58-c2cc-11de-8d13-0010c6dffd0f" + "uuid" : "6d9002ea-a96b-4889-af78-82d48c57a110" }, "voided":false } diff --git a/omod/src/test/resources/diagnosisMetaData.xml b/omod/src/test/resources/diagnosisMetaData.xml index 716a517f1..114315297 100644 --- a/omod/src/test/resources/diagnosisMetaData.xml +++ b/omod/src/test/resources/diagnosisMetaData.xml @@ -8,49 +8,49 @@ - + - + - + - + ‰ - + - + - + @@ -65,6 +65,7 @@ + diff --git a/omod/src/test/resources/dispositionMetaData.xml b/omod/src/test/resources/dispositionMetaData.xml index fc9f3366e..7aba3573b 100644 --- a/omod/src/test/resources/dispositionMetaData.xml +++ b/omod/src/test/resources/dispositionMetaData.xml @@ -4,20 +4,20 @@ - + - + - + diff --git a/omod/src/test/resources/existingDispositionObs.xml b/omod/src/test/resources/existingDispositionObs.xml index 5f869ce90..3806633c1 100644 --- a/omod/src/test/resources/existingDispositionObs.xml +++ b/omod/src/test/resources/existingDispositionObs.xml @@ -2,13 +2,13 @@ \ No newline at end of file diff --git a/omod/src/test/resources/shouldUpdateObservations.xml b/omod/src/test/resources/shouldUpdateObservations.xml index 947ed4443..6b2ef4c5f 100644 --- a/omod/src/test/resources/shouldUpdateObservations.xml +++ b/omod/src/test/resources/shouldUpdateObservations.xml @@ -21,8 +21,8 @@ - - - + + + diff --git a/pom.xml b/pom.xml index f15ba0649..7e851b6b0 100644 --- a/pom.xml +++ b/pom.xml @@ -3,7 +3,7 @@ 4.0.0 org.openmrs.module emrapi - 1.37.0-SNAPSHOT + 2.0.0-SNAPSHOT pom EMR API Module Higher-level APIs to support building EMR functionality in OpenMRS, to supplement the data-level APIs @@ -31,195 +31,123 @@ api - api-1.10 - api-1.11 - api-1.12 - api-2.2 - web-2.2 condition-list - fhir-condition omod - api-pre2.2 - web-pre2.2 UTF-8 - 1.3 - 0.10.4 - 0.2.14 - 1.1 + 2.2.1 + 1.16.0 + 1.7.0 + 1.25.0 + 0.2.16 + 1.3.0 2.5.0 - 1.2.1 - 1.2.2 + 1.6.0 + 1.9.0 2.8.0 1.4 - 2.16 - 1.11.6 + 2.42.0 1.5.0 - reporting-api-1.9 + 4.0.1 - - - - org.openmrs.module - reporting-api - ${reportingVersion} - provided - - - org.openmrs.module - ${reportingApiConditionalArtifactId} - ${reportingVersion} - provided - - - org.openmrs.module - serialization.xstream-api - ${serialization.xstreamVersion} - provided - - - org.openmrs.module - serialization.xstream-api-1.9 - ${serialization.xstreamVersion} - provided - - - org.openmrs.module - serialization.xstream-api-1.10 - ${serialization.xstreamVersion} - provided - - - org.openmrs.module - serialization.xstream-api-2.0 - ${serialization.xstreamVersion} - provided - - - org.openmrs.module - calculation-api - ${calculationVersion} - provided - - - org.openmrs.module - providermanagement-api - ${providermanagementVersion} - provided - - - org.openmrs.module - metadatasharing-api - ${metadatasharingVersion} - provided - - - org.openmrs - event-api - ${eventVersion} - provided - - - org.openmrs.module - metadatamapping-api - ${metadatamappingVersion} - provided - - - - - org.openmrs.test - openmrs-test - ${openMRSVersion} - pom - test - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - test-jar - test - - - - - org.openmrs.module reporting-api + ${reportingVersion} provided - org.openmrs.module - ${reportingApiConditionalArtifactId} + reporting-api-1.10 + ${reportingVersion} provided - org.openmrs.module - serialization.xstream-api + reporting-api-2.0 + ${reportingVersion} provided - org.openmrs.module - serialization.xstream-api-1.9 + reporting-api-2.2 + ${reportingVersion} provided - - + org.openmrs.module - serialization.xstream-api-1.10 + serialization.xstream-api + ${serialization.xstreamVersion} provided - org.openmrs.module - serialization.xstream-api-2.0 + serialization.xstream-api-1.10 + ${serialization.xstreamVersion} provided - org.openmrs.module - calculation-api + serialization.xstream-api-2.0 + ${serialization.xstreamVersion} provided - - org.codehaus.groovy - groovy-all - 1.7.6 - jar + org.openmrs.module + calculation-api + ${calculationVersion} provided - org.openmrs.module providermanagement-api + ${providermanagementVersion} provided - org.openmrs.module metadatasharing-api + ${metadatasharingVersion} + provided + + + org.openmrs + event-api + ${eventVersion} provided - org.openmrs.module metadatamapping-api + ${metadatamappingVersion} provided + - org.openmrs - event-api + org.openmrs.test + openmrs-test + ${openMRSVersion} + pom + test + + + org.openmrs.api + openmrs-api + ${openMRSVersion} + test-jar + test + + + + org.codehaus.groovy + groovy-all + 1.7.6 + jar provided @@ -231,10 +159,6 @@ provided - - - - org.openmrs.contrib testutils @@ -242,10 +166,6 @@ test - - - - javax.servlet @@ -279,8 +199,6 @@ provided - - @@ -290,8 +208,8 @@ org.apache.maven.plugins maven-compiler-plugin - 1.6 - 1.6 + 8 + 8 UTF-8 diff --git a/tools/src/main/resources/eclipse/OpenMRSFormatter.xml b/tools/src/main/resources/eclipse/OpenMRSFormatter.xml deleted file mode 100644 index 8c11c7123..000000000 --- a/tools/src/main/resources/eclipse/OpenMRSFormatter.xml +++ /dev/null @@ -1,268 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/web-2.2/pom.xml b/web-2.2/pom.xml deleted file mode 100644 index bbd7defb9..000000000 --- a/web-2.2/pom.xml +++ /dev/null @@ -1,122 +0,0 @@ - - 4.0.0 - - - org.openmrs.module - emrapi - 1.37.0-SNAPSHOT - - - emrapi-web-2.2 - jar - EMR WEB Module 2.2 - WEB 2.2 project for EMRAPI - - - 2.2.1-SNAPSHOT - - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - provided - - - - ${project.parent.groupId} - ${project.parent.artifactId}-condition-list - ${project.parent.version} - compile - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - provided - - - - org.openmrs.api - openmrs-api - ${openMRSVersion} - test-jar - test - - - javassist - javassist - - - - - - org.openmrs.test - openmrs-test - ${openMRSVersion} - pom - test - - - - org.openmrs.web - openmrs-web - jar - ${openMRSVersion} - provided - - - - org.openmrs.web - openmrs-web - test-jar - ${openMRSVersion} - test - - - - org.openmrs.module - webservices.rest-omod-1.9 - ${webservices.restVersion} - provided - - - - org.codehaus.jackson - jackson-mapper-asl - 1.9.13 - test - - - - - - - src/main/resources - true - - - - - - src/test/resources - - **/*.properties - **/*.xml - - true - - - src/test/resources - - **/*.properties - **/*.xml - - false - - - - - diff --git a/web-pre2.2/pom.xml b/web-pre2.2/pom.xml deleted file mode 100644 index 410697b33..000000000 --- a/web-pre2.2/pom.xml +++ /dev/null @@ -1,94 +0,0 @@ - - - - emrapi - org.openmrs.module - 1.37.0-SNAPSHOT - - 4.0.0 - - emrapi-web-pre2.2 - jar - EMR WEB Module - WEB project for EMRAPI - - - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api - ${project.parent.version} - compile - - - - ${project.parent.groupId} - ${project.parent.artifactId}-api-1.10 - ${project.parent.version} - compile - - - - ${project.parent.groupId} - ${project.parent.artifactId}-condition-list - ${project.parent.version} - compile - - - - org.openmrs.web - openmrs-web - jar - ${openMRSVersion} - provided - - - - org.openmrs.web - openmrs-web - test-jar - ${openMRSVersion} - test - - - - org.openmrs.module - webservices.rest-omod-1.8 - ${webservices.restVersion} - provided - - - - - - - - - src/main/resources - true - - - - - - src/test/resources - - **/*.properties - **/*.xml - - true - - - src/test/resources - - **/*.properties - **/*.xml - - false - - - - - - diff --git a/web-pre2.2/src/main/java/org/openmrs/module/emrapi/web/controller/ConditionController.java b/web-pre2.2/src/main/java/org/openmrs/module/emrapi/web/controller/ConditionController.java deleted file mode 100644 index b1b12a572..000000000 --- a/web-pre2.2/src/main/java/org/openmrs/module/emrapi/web/controller/ConditionController.java +++ /dev/null @@ -1,72 +0,0 @@ -package org.openmrs.module.emrapi.web.controller; - -import java.util.ArrayList; -import java.util.List; - -import org.openmrs.api.ConceptService; -import org.openmrs.api.PatientService; -import org.openmrs.module.emrapi.conditionslist.ConditionService; -import org.openmrs.module.emrapi.conditionslist.contract.Condition; -import org.openmrs.module.emrapi.conditionslist.contract.ConditionHistory; -import org.openmrs.module.emrapi.conditionslist.contract.ConditionHistoryMapper; -import org.openmrs.module.emrapi.conditionslist.contract.ConditionMapper; -import org.openmrs.module.webservices.rest.web.v1_0.controller.BaseRestController; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Controller; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.ResponseBody; - -@Controller -@RequestMapping(value = "/rest/emrapi") -public class ConditionController extends BaseRestController { - - ConditionMapper conditionMapper = new ConditionMapper(); - - ConditionHistoryMapper conditionHistoryMapper = new ConditionHistoryMapper(conditionMapper); - - ConditionService conditionService; - - PatientService patientService; - - ConceptService conceptService; - - @Autowired - public ConditionController(ConditionService conditionService, PatientService patientService, - ConceptService conceptService) { - this.conditionService = conditionService; - this.patientService = patientService; - this.conceptService = conceptService; - } - - @RequestMapping(method = RequestMethod.GET, value = "/conditionhistory") - @ResponseBody - public List getConditionHistory(@RequestParam("patientUuid") String patientUuid) { - List conditionHistory = conditionService.getConditionHistory( - patientService.getPatientByUuid(patientUuid)); - - return conditionHistoryMapper.map(conditionHistory); - } - - @RequestMapping(method = RequestMethod.GET, value = "/condition") - @ResponseBody - public List getCondition(@RequestParam("conditionUuid") String conditionUuid) { - List conditions =new ArrayList(); - org.openmrs.module.emrapi.conditionslist.Condition condition = conditionService.getConditionByUuid(conditionUuid); - conditions.add(conditionMapper.map(condition)); - return conditions; - } - - @RequestMapping(method = RequestMethod.POST, value = "/condition") - @ResponseBody - public List save(@RequestBody Condition[] conditions) { - List savedConditions = new ArrayList(); - for (Condition condition : conditions) { - org.openmrs.module.emrapi.conditionslist.Condition savedCondition = conditionService.save(conditionMapper.map(condition)); - savedConditions.add(conditionMapper.map(savedCondition)); - } - return savedConditions; - } -}