diff --git a/.gitignore b/.gitignore
index fd9ee5c..689298d 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,7 +5,7 @@
 /example/paper.jats
 /example/paper.crossref
 /example/paper.preprint.tex
-example/paper.tex
+/example/paper.tex
 
 # JATS schema files
 /test/JATS-Publishing-1-2-MathML2-XSD.zip
@@ -15,9 +15,9 @@ example/paper.tex
 
 # If you copy the resources into the base directory to
 # make the Makefile work, don't accidentally commit these
-apa.csl
-default-article-info.yaml
-footer.csl
+/apa.csl
+/default-article-info.yaml
+/footer.csl
 /joss
 /jose
 /resciencec
diff --git a/example/paper.md b/example/paper.md
index 9c2e3fc..739d185 100644
--- a/example/paper.md
+++ b/example/paper.md
@@ -240,7 +240,6 @@ discouraged.
 Usually [lists], as described in the next section, should be preferred
 over forth- and fifth-level headings.
 
-
 ### Lists
 
 Bullet lists and numbered lists, a.k.a. enumerations, offer an