From c1e69da6c4dad61737cb1f6d21e9009fdbf2fa8c Mon Sep 17 00:00:00 2001 From: ShixiangWang Date: Sun, 28 Jul 2024 14:03:37 +0800 Subject: [PATCH] update readme --- README.md | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 1a05dcc3..868d6240 100644 --- a/README.md +++ b/README.md @@ -14,17 +14,23 @@ Xena](https://xenabrowser.net/datapages/). ![Alt](https://repobeats.axiom.co/api/embed/2f1f0c9a7a5c3c710febb3ee3d1e26f249d5a3ed.svg "Repobeats analytics image") -Please cite the following article when you used **UCSCXenaShiny** in your study: +Please cite any of the following articles when you used **UCSCXenaShiny** in your study: --------------- -Shixiang Wang\#, Yi Xiong\#, Longfei Zhao\#, Kai Gu\#, Yin Li, Fei Zhao, Jianfeng Li, Mingjie Wang, Haitao Wang, Ziyu Tao, Tao Wu, Yichao Zheng, Xuejun Li, Xue-Song Liu, UCSCXenaShiny: An R/CRAN Package for Interactive Analysis of UCSC Xena Data, Bioinformatics, 2021;, btab561, https://doi.org/10.1093/bioinformatics/btab561. +**V2** + +- Li S, et al. UCSCXenaShiny v2: Facilitating Integrative and Personalized Oncology Omics Analysis. 2024 (In preparation) + +**V1** + +- Shixiang Wang\#, Yi Xiong\#, Longfei Zhao\#, Kai Gu\#, Yin Li, Fei Zhao, Jianfeng Li, Mingjie Wang, Haitao Wang, Ziyu Tao, Tao Wu, Yichao Zheng, Xuejun Li, Xue-Song Liu, UCSCXenaShiny: An R/CRAN Package for Interactive Analysis of UCSC Xena Data, Bioinformatics, 2021;, btab561, https://doi.org/10.1093/bioinformatics/btab561. --------------- ## :cloud: Use on cloud -If you don't want to install R and packages locally, or you have no programming experience, try using this tool on `Oncoharmony Network` (``) or `Hiplot ORG` platform (``). +If you don't want to install R and packages locally, or you have no programming experience, try using this tool on `Oncoharmony Network` (`http://shiny.zhoulab.ac.cn/UCSCXenaShiny`) or `Hiplot ORG` platform (`https://shiny.hiplot.cn/ucsc-xena-shiny`). We have deployed two additional apps: a basic version of V2 (`https://shiny.zhoulab.ac.cn/UCSCXenaShiny_basic/`) and an archive version of V1 (`https://shiny.zhoulab.ac.cn/UCSCXenaShinyV1/`, code please see v1 branch).