mkdocs.yml

site_name: BioMedGPS Data
site_description: "A repo for building a customized knowledge graph, you can use it to train knowledge graph embedding models for drug repurposing and disease mechanism research."
site_url: https://open-prophetdb.github.io/biomedgps-data/
site_author: "Jingcheng Yang"
announce: "OpenProphetDB"
announce_text: 'We are looking for partners who are highly motivated on drug repurposing to join the <a href="https://www.prophetdb.org">OpenProphetDB community</a>. Please contact us if you are interested.'
docs_dir: docs/
repo_name: "BioMedGPS Data"
repo_url: "https://github.com/open-prophetdb/biomedgps-data"
markdown_extensions:
  - meta
  - abbr
  - admonition
  - pymdownx.details
  - attr_list
  - md_in_html
  - footnotes
  - toc:
      permalink: true
  - tables
  - pymdownx.highlight:
      anchor_linenums: true
  - pymdownx.inlinehilite
  - pymdownx.snippets
  - pymdownx.superfences
plugins:
  - search
  - git-revision-date
extra_css:
  - assets/stylesheets/extra.css
extra:
  homepage: https://open-prophetdb.github.io/biomedgps-data/
  social:
    - icon: fontawesome/brands/github
      link: https://github.com/open-prophetdb/biomedgps-data
      name: BioMedGPS Data
  generator: false
copyright: Copyright &copy; 2016 - 2024 OpenProphetDB
theme:
  custom_dir: docs/assets/overrides
  features:
    - navigation.instant
    - navigation.tabs
    - navigation.tabs.sticky
    - navigation.top
    - search.highlight
    - search.suggest
    - search.share
  logo: assets/images/logo.png
  icon:
    repo: fontawesome/brands/github
  favicon: assets/images/logo.png
  palette:
    - scheme: default
      toggle:
        icon: material/toggle-switch-outline
        name: Switch to dark mode
      primary: blue
    - scheme: slate
      toggle:
        icon: material/toggle-switch-off-outline
        name: Switch to light mode
  name: "material"

# Table of contents
# If you want to add more docs, just add them to the list below, update the path_name_map variable in gen_docsite.py for adding a new index for your doc file
nav:
  - Introduction: index.md
  - Installation: installation_index.md
  - Using Knowledge Graph: graph_data_index.md
  - Building Knowledge Graph: graph_data_kg.md
  - Analyzing Knowledge Graph: graph_analysis_index.md
  - Generating Initial Embeddings: embeddings_index.md
  # - Train KGE Model:
  #   - Training: wandb_index.md
  #   - Generate Initial Embedding [Optional]: embeddings_index.md
  #   - Embedding Analysis: embedding_analysis_index.md
  #   - Benchmark: benchmarks_index.md
  # - Prediction: prediction_index.md
  - FAQs: faqs.md