README.md

plot_atlas

plot on standard brain

plot on inflated brain

To plot ROIs

in the script plot_rois_on_standard_brain_surf.py

1. prepare all the mask images in the data folder
2. specify the mask folder

data_dir = os.path.join('../data','fmri_rois')

3. specify the ROI names we want to plot

roi_names = """fusiform
inferiorparietal
inferiortemporal
lateraloccipital
lingual
middlefrontal
parahippocampal
pericalcarine
precuneus
superiorfrontal
superiorparietal
ventrolateralPFC""".split('\n')

4. specify the figure name

figure name = 'ROI_surf.jpg'

plot stats brain maps

in script plot_randomise_stats_results_on_surf.py