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Currently, the use of rentrez::entrez_search requires retmax = 300 or we get this error:
Error in entrez_check(response) :
HTTP failure 414, the request is too large. For large requests, try using web history as described in the rentrez tutorial
Need to either add a way to loop rentrez::entrez_search or use seb history.
Should also add a global parameter to limit the maximum number of genomes/reads to download.
The text was updated successfully, but these errors were encountered:
zachary-foster
added a commit
to grunwaldlab/pathogensurveillance
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this issue
Jul 17, 2024
Currently, the use of
rentrez::entrez_search
requiresretmax = 300
or we get this error:Need to either add a way to loop
rentrez::entrez_search
or use seb history.Should also add a global parameter to limit the maximum number of genomes/reads to download.
The text was updated successfully, but these errors were encountered: