diff --git a/nextflow_schema.json b/nextflow_schema.json index de58c1b0..bd2ee9c4 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -293,20 +293,20 @@ "type": "string", "fa_icon": "fas fa-file-code", "default": "Immuno-HCD", - "description": "Specify the ms2pip model that should be used for rescoring. Checkout the ms2pip documentation for available models." + "description": "Specify the MS²PIP model that should be used for rescoring. Checkout the MS²PIP documentation for available models." }, "ms2pip_model_dir": { "type": "string", "format": "directory-path", "fa_icon": "fas fa-file-code", "hidden": true, - "description": "Specify the ms2pip model that should be used for rescoring. Checkout the ms2pip documentation for available models." + "description": "Specify a local directory holding at least the MS²PIP models specified in `ms2pip_model`." }, "deeplc_calibration_set_size": { "type": "number", "fa_icon": "fas fa-file-code", "default": 0.15, - "description": "Specify the number or percentage of PSMs that should be used for calibration of the deeplc model." + "description": "Specify the number or percentage of PSMs that should be used for calibration of the DeepLC model." }, "refine_fdr_on_predicted_subset": { "type": "boolean",