From 196c184260c650e3f7b07fd0a4f2472fff309c69 Mon Sep 17 00:00:00 2001 From: "Diego Alvarez S." Date: Thu, 31 Oct 2024 19:16:30 -0300 Subject: [PATCH] Changelog --- CHANGELOG.md | 12 +++++++----- nextflow.config | 2 +- 2 files changed, 8 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 75f0332b..8fdd6131 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Added` +- [#707](https://github.com/nf-core/mag/pull/707) - Make Bin QC a subworkflow (added by @dialvarezs) - [#707](https://github.com/nf-core/mag/pull/707) - Added CheckM2 as an alternative bin completeness and QC tool (added by @dialvarezs) - [#708](https://github.com/nf-core/mag/pull/708) - Added `--exclude_unbins_from_postbinning` parameter to exclude unbinned contigs from post-binning processes, speeding up Prokka in some cases (added by @dialvarezs) @@ -14,10 +15,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` -- [#708](https://github.com/nf-core/mag/pull/708) - Fixed channel passed as GUNC input (added by @dialvarezs) +- [#707](https://github.com/nf-core/mag/pull/708) - Fixed channel passed as GUNC input (added by @dialvarezs) ### `Dependencies` +| Tool | Previous version | New version | +| ------- | ---------------- | ----------- | +| CheckM2 | | 1.0.2 | +| BUSCO | 5.4.3 | 5.8.0 | + ### `Deprecated` ## 3.2.1 [2024-10-30] @@ -32,10 +38,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Dependencies` -| Tool | Previous version | New version | -| ------- | ---------------- | ----------- | -| CheckM2 | | 1.0.2 | - ### `Deprecated` ## 3.2.0 [2024-10-27] diff --git a/nextflow.config b/nextflow.config index ad7448fb..e35d2914 100644 --- a/nextflow.config +++ b/nextflow.config @@ -121,7 +121,7 @@ params { refine_bins_dastool = false refine_bins_dastool_threshold = 0.5 postbinning_input = 'raw_bins_only' - exclude_unbins_from_postbinning = false + exclude_unbins_from_postbinning = false // Bin QC skip_binqc = false