diff --git a/dorado/cli/basecaller.cpp b/dorado/cli/basecaller.cpp index 149f3a4d1..29bb95b44 100644 --- a/dorado/cli/basecaller.cpp +++ b/dorado/cli/basecaller.cpp @@ -420,7 +420,7 @@ int basecaller(int argc, char* argv[]) { parser.visible.add_argument("--estimate-poly-a") .help("Estimate poly-A/T tail lengths (beta feature). Primarily meant for cDNA and " "dRNA use cases. Note that if this flag is set, then adapter/primer detection " - "be disabled.") + "will be disabled.") .default_value(false) .implicit_value(true); @@ -528,6 +528,9 @@ int basecaller(int argc, char* argv[]) { std::exit(EXIT_FAILURE); } no_trim_primers = no_trim_adapters = true; + spdlog::info( + "Estimation of poly-a has been requested, so adapter/primer trimming has been " + "disabled."); } if (parser.visible.is_used("--kit-name") && parser.visible.is_used("--barcode-arrangement")) {