README.md

prot-repeat-finder

To find repeats of length(4 and above) in multiple protein sequences

Requirements

1. JDK8 or above

Steps to run the file

1. Clone the repo / download the ViralRepeatFinder.java file
2. Compile the .java file using the command line or the terminal, with the command:

E:\> javac ViralProteinMotifFinder.java

3. To run the code, type the following on the command line / terminal:

E:\> java  ViralProteinMotifFinder

4. The code asks you to give the path for the file which contains single/multiple protein sequences in FASTA format
5. You can use the sample input file to test run the code.