test bio3d_dccm 2.3.4

[jennaj]

toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm/2.3.4

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm/2.3.4

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	1
Passed	0
Error	0
Failure	1
Skipped	0

Failed s

• ❌ toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm (Test tool test #1)

  Problems:

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm/2.3.4, exit_code: 127, stderr: .
    

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm/2.3.4, exit_code: 127, stderr: .
    

  Command Line:

  Exit Code:

  • 127

  Standard Output:

  • /corral4/main/jobs/050/972/50972776/tool_script.sh: line 9: Rscript: not found
    

  Traceback:

  Job Parameters:

  • Job parameter	Parameter value
    dccm	{"__current_case__": 0, "sele": "calpha"}
    chromInfo	"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
    dbkey	"?"
    __input_ext	"dcd"

[jennaj]

Merging old into new here #60 maybe has not worked at ORG (ever?)

Rscript: not found -- container problem? ping @natefoo

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm/2.3.4

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	1
Passed	0
Error	0
Failure	1
Skipped	0

Failed s

• ❌ toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm (Test tool test #1)

  Problems:

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm/2.3.4, exit_code: 127, stderr: .
    

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_dccm/bio3d_dccm/2.3.4, exit_code: 127, stderr: .
    

  Command Line:

  Exit Code:

  • 127

  Standard Output:

  • /corral4/main/jobs/051/056/51056622/tool_script.sh: line 9: Rscript: not found
    

  Traceback:

  Job Parameters:

  • Job parameter	Parameter value
    dccm	{"__current_case__": 0, "sele": "calpha"}
    chromInfo	"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
    dbkey	"?"
    __input_ext	"dcd"