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0.16.0.dev0

0.15.0 (2020-08-12)

  • Lint types of default values.
  • Fix bugs in schema related to differing type names between Galaxy and CWL.
  • Generate cwl v1.2 instead of cwl v1.2.0-dev5 release now that it has been released.
  • More testing of linting and CWL 1.2 export.

0.14.0 (2020-08-11)

  • Bug fix where native export had explicit outputs declaration still in it (wouldn't break anything, but was deceptive).
  • Fixes for experimental CWL 1.2 abstract export.
  • Improve script structures and documentation.
  • Improve code structure - add more types, make more things immutable, mention mutability in docstrings.

0.13.1 (2020-08-03)

  • Improve package structure - publish fixed sphinx docs, fix readme badges, add mypy typing support.

0.13.0 (2020-07-30)

  • Add experimental export to CWL 1.2 using new abstract Operation classes.

0.12.0 (2020-07-27)

  • Drop support for Python 2 - to support next bullet.
  • Update schema parser for recent changes to schema salad.

0.11.4 (2020-07-27)

  • Added abstraction for uniform access to workflow outputs across formats.

0.11.3 (2020-07-23)

  • Bug fixes for exporting newer input concepts from native to Format 2.
  • Added abstraction for uniform access to workflow inputs across formats.

0.11.2 (2020-07-22)

  • Rework cytoscape and helpers for reuse from Planemo.
  • Rev markdown validator for and from latest Galaxy changes.

0.11.1 (2020-02-25)

  • Bug fix for gxwf-lint invocation from setup.py installed script.

0.11.0 (2020-02-25)

  • Validate Galaxy Markdown in workflow reports as part of linting.
  • Improved null handling in native ga workflow linting.
  • Enhancements to workflow linting from Python. Lint for lack of documentation, tools using the test toolshed, and implement special linting for training material workflows to ensure a tag matches the workflow topic.
  • Add gxwf-viz script that produces a cytoscape visualization of a workflow.

0.10.1 (2019-12-07)

  • Bug fix to handle outputs without labels in Format 2 - they don't validate per se but they are important for testing in the Galaxy framework.

0.10.0 (2019-12-06)

  • Implement scheam, validation, linting (for Format 2 and .ga).
  • Handle new reports field in Galaxy 19.09 workflows.
  • Numerous fixes for conversiion to and from native workflows.
  • Numerous new test cases.
  • Implement Java project for valiating and linting both kinds of workflows.

0.9.0 (2019-07-08)

  • Implement default values in gxformat2.

0.8.4 (2019-06-24)

  • Fix output IDs of 0.

0.8.3 (2019-05-23)

  • Implement set_columns PJA.

0.8.2 (2019-03-16)

  • Allow another API return option for experimental tool creation API.

0.8.1 (2019-03-11)

  • Implement change datatype PJA.

0.8.0 (2018-11-01)

  • Implement experimental CWL-style step defaults (see Galaxy PR #6850).

0.7.1 (2018-10-09)

  • Various small fixes for changes in 0.7.1.

0.7.0 (2018-10-08)

  • Add some basic test cases.
  • Allow ID-map style listing of steps.
  • Ordered load (in addition to existing dump functionality) or ordering of steps in ID-map style variant works.
  • Allow CWL-style $graph defs that can define multiple workflows in a single file.
  • Initial work on de-duplicating subworkflow definitions on import.
  • Fix position handling while exporting workflow.

0.6.1 (2018-10-01)

  • Fix export of non-data parameters and implicit workflow connections.

0.6.0 (2018-10-01)

  • Various fixes, allow id map style workflow input definitions.

0.5.0 (2018-10-01)

  • More fixes for PJA, add the doc keyword to format 2 workflows to match CWL workflows. Map to and from native Galaxy workflows as annotations.

0.4.0 (2018-10-01)

  • Fixes for exporting PJA when exporting workflows from native .ga to format 2.

0.3.2 (2018-10-01)

  • Fixes for exporting workflow outputs from native .ga to format 2, support for modern map style output definitions like CWL 1.0.

0.3.1 (2018-10-01)

  • Fixes for exporting subworkflows from native .ga to format 2.

0.3.0 (2018-09-30)

  • More cwl style inputs, initial work on conversion from native workflows, various small fixes and tweaks.

0.2.0 (2018-02-21)

  • Bring in latest Galaxy updates - Python 3 fixes, safe YAML usage, and more PJA implemented.

0.1.1 (2016-08-15)

  • Fix one Python 3 incompatibility.

0.1.0 (2016-05-02)

  • Initial version - code from Galaxy's test framework with changes based on planemo testing.