diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index e7efd59..337a674 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -51,8 +51,19 @@ jobs: - name: Install dependencies run: poetry install + - name: Glob notebooks in docs folder + uses: tj-actions/glob@v22 + id: glob + with: + files: | + docs/**/*.ipynb + + - name: Run documentation notebooks + run: | + poetry run jupyter nbconvert --execute --to notebook --inplace ${{ steps.glob.outputs.paths }} + - name: Generate docs - working-directory: doc/ + working-directory: docs/ run: make html - name: Setup Pages @@ -61,7 +72,7 @@ jobs: - name: Upload artifact uses: actions/upload-pages-artifact@v3 with: - path: "doc/_build/html/" + path: "docs/_build/html/" - name: Deploy to GitHub Pages id: deployment diff --git a/README.md b/README.md index dba1ba0..a08fb1a 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,9 @@ # stormvogel 🐦 +An interactive approach to probabilistic model checking + +Take a look at [the stormvogel documentation!](https://moves-rwth.github.io/stormvogel/) + ## Setup Install `poetry`. Install dependencies: diff --git a/doc/Makefile b/docs/Makefile similarity index 100% rename from doc/Makefile rename to docs/Makefile diff --git a/doc/conf.py b/docs/conf.py similarity index 97% rename from doc/conf.py rename to docs/conf.py index 11df729..9216e28 100644 --- a/doc/conf.py +++ b/docs/conf.py @@ -24,5 +24,5 @@ # -- Options for HTML output ------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output -html_theme = "alabaster" +html_theme = "furo" html_static_path = ["_static"] diff --git a/doc/die.ipynb b/docs/getting_started/die.ipynb similarity index 93% rename from doc/die.ipynb rename to docs/getting_started/die.ipynb index 95880c2..104e778 100644 --- a/doc/die.ipynb +++ b/docs/getting_started/die.ipynb @@ -10,7 +10,14 @@ { "cell_type": "code", "execution_count": 1, - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:25.882261Z", + "iopub.status.busy": "2024-07-09T08:20:25.882010Z", + "iopub.status.idle": "2024-07-09T08:20:26.004272Z", + "shell.execute_reply": "2024-07-09T08:20:26.004022Z" + } + }, "outputs": [], "source": [ "import stormvogel.model\n", @@ -28,6 +35,12 @@ "cell_type": "code", "execution_count": 2, "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.005831Z", + "iopub.status.busy": "2024-07-09T08:20:26.005718Z", + "iopub.status.idle": "2024-07-09T08:20:26.016517Z", + "shell.execute_reply": "2024-07-09T08:20:26.016314Z" + }, "scrolled": true }, "outputs": [ @@ -334,7 +347,7 @@ " // adding nodes and edges to the graph\n", " data = {nodes: nodes, edges: edges};\n", "\n", - " var options = {"nodes": {"color": {"background": "white", "border": "black", "highlight": {"background": "white", "border": "black"}}}, "init": {"borderWidth": 3, "color": null, "shape": "circle"}, "states": {"borderWidth": 1, "color": null, "shape": "elipse"}, "actions": {"borderWidth": 1, "color": null, "shape": "box"}, "numbers": {"fractions": true, "digits": 5, "max_denominator": 20}, "layout": {"randomSeed": 5}};\n", + " var options = {"nodes": {"color": {"background": "white", "border": "black", "highlight": {"background": "white", "border": "black"}, "font": {"color": "black", "size": 14}}}, "init": {"borderWidth": 3, "color": null, "shape": "circle", "repulsion": 1}, "states": {"borderWidth": 1, "color": null, "shape": "elipse", "repulsion": 1}, "actions": {"borderWidth": 1, "color": null, "shape": "box", "repulsion": 1}, "numbers": {"fractions": true, "digits": 5, "max_denominator": 20}, "edges": {"font": {"color": "black", "size": 14}}, "layout": {"randomSeed": 5}};\n", "\n", " \n", "\n", @@ -373,7 +386,7 @@ { "data": { "text/plain": [ - "" + "" ] }, "execution_count": 2, diff --git a/docs/getting_started/model.html b/docs/getting_started/model.html new file mode 100644 index 0000000..ba51cfc --- /dev/null +++ b/docs/getting_started/model.html @@ -0,0 +1,321 @@ + + + + + + + + + + + + + + + +
+

+
+ + + + + + +
+

+
+ + + + + +
+ + +
+
+ + + + + + + diff --git a/docs/getting_started/stars.json b/docs/getting_started/stars.json new file mode 100644 index 0000000..84069e5 --- /dev/null +++ b/docs/getting_started/stars.json @@ -0,0 +1,32 @@ +{ + "nodes": { + "color": { + "background": "#99c1f1", + "border": "#000000" + } + }, + "init": { + "borderWidth": 3, + "color": null, + "shape": "circle" + }, + "states": { + "borderWidth": 1, + "color": "#f8e45c", + "shape": "star" + }, + "actions": { + "borderWidth": 1, + "color": null, + "shape": "box" + }, + "numbers": { + "fractions": false, + "digits": 5, + "max_denominator": 20 + }, + "rounding": { + "fractions": "False", + "digits": 2 + } +} diff --git a/docs/getting_started/study.ipynb b/docs/getting_started/study.ipynb new file mode 100644 index 0000000..c538f6c --- /dev/null +++ b/docs/getting_started/study.ipynb @@ -0,0 +1,592 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "31fda09b", + "metadata": {}, + "source": [ + "# The studying dilemma" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "id": "e924f3a4", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.825515Z", + "iopub.status.busy": "2024-07-09T08:20:26.824866Z", + "iopub.status.idle": "2024-07-09T08:20:26.945374Z", + "shell.execute_reply": "2024-07-09T08:20:26.945100Z" + } + }, + "outputs": [], + "source": [ + "import stormvogel.model\n", + "import stormvogel.visualization\n", + "from stormvogel.visualization import show, Layout" + ] + }, + { + "cell_type": "markdown", + "id": "0b09222b", + "metadata": {}, + "source": [ + "Let's create an MDP and add all states:" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "1f2120a8", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.946953Z", + "iopub.status.busy": "2024-07-09T08:20:26.946840Z", + "iopub.status.idle": "2024-07-09T08:20:26.949021Z", + "shell.execute_reply": "2024-07-09T08:20:26.948798Z" + } + }, + "outputs": [], + "source": [ + "mdp = stormvogel.model.new_mdp(\"Monty Hall\")\n", + "\n", + "init = mdp.get_initial_state()\n", + "study = mdp.action(\"study\")\n", + "not_study = mdp.action(\"don't study\")\n", + "\n", + "studied = mdp.new_state(\"studied\")\n", + "not_studied = mdp.new_state(\"didn't study\")\n", + "pass_test = mdp.new_state(\"pass test\")\n", + "fail_test = mdp.new_state(\"fail test\")\n", + "end = mdp.new_state(\"end\")" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "1143b6c0", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.950304Z", + "iopub.status.busy": "2024-07-09T08:20:26.950231Z", + "iopub.status.idle": "2024-07-09T08:20:26.951762Z", + "shell.execute_reply": "2024-07-09T08:20:26.951567Z" + } + }, + "outputs": [], + "source": [ + "init.set_transitions([\n", + " (study, studied),\n", + " (not_study, not_studied)\n", + "])" + ] + }, + { + "cell_type": "markdown", + "id": "1db64312", + "metadata": {}, + "source": [ + "If you studied, then there is a 90% chance that you pass the test." + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "64bfb789", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.952971Z", + "iopub.status.busy": "2024-07-09T08:20:26.952897Z", + "iopub.status.idle": "2024-07-09T08:20:26.954414Z", + "shell.execute_reply": "2024-07-09T08:20:26.954198Z" + } + }, + "outputs": [], + "source": [ + "studied.set_transitions([\n", + " (9/10, pass_test),\n", + " (1/10, fail_test)\n", + "])" + ] + }, + { + "cell_type": "markdown", + "id": "600839f5", + "metadata": {}, + "source": [ + "If you did not study, then there is only a 40% chance that you pass the test." + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "89d1d749", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.955656Z", + "iopub.status.busy": "2024-07-09T08:20:26.955580Z", + "iopub.status.idle": "2024-07-09T08:20:26.957175Z", + "shell.execute_reply": "2024-07-09T08:20:26.956924Z" + } + }, + "outputs": [], + "source": [ + "not_studied.set_transitions([\n", + " (4/10, pass_test),\n", + " (6/10, fail_test)\n", + "])" + ] + }, + { + "cell_type": "markdown", + "id": "b0c4965f", + "metadata": {}, + "source": [ + "After the test, you are done" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "2f8fb42e", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.958462Z", + "iopub.status.busy": "2024-07-09T08:20:26.958374Z", + "iopub.status.idle": "2024-07-09T08:20:26.959893Z", + "shell.execute_reply": "2024-07-09T08:20:26.959669Z" + } + }, + "outputs": [], + "source": [ + "pass_test.set_transitions([(1, end)])\n", + "fail_test.set_transitions([(1, end)])" + ] + }, + { + "cell_type": "markdown", + "id": "14d7ab92", + "metadata": {}, + "source": [ + "We'll add some rewards for passing the test (nice!) and for not studying (had some free time)" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "bfcbb7fa", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.961112Z", + "iopub.status.busy": "2024-07-09T08:20:26.961038Z", + "iopub.status.idle": "2024-07-09T08:20:26.962602Z", + "shell.execute_reply": "2024-07-09T08:20:26.962405Z" + } + }, + "outputs": [], + "source": [ + "reward_model = mdp.add_rewards(\"R\")\n", + "reward_model.set(pass_test, 100)\n", + "reward_model.set(fail_test, 0)\n", + "reward_model.set(not_studied, 15)" + ] + }, + { + "cell_type": "markdown", + "id": "797e09bb", + "metadata": {}, + "source": [ + "We'll decorate our model with a nice layout." + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "0df1511e-565d-45d0-93a8-adafbfaaaefa", + "metadata": { + "execution": { + "iopub.execute_input": "2024-07-09T08:20:26.963792Z", + "iopub.status.busy": "2024-07-09T08:20:26.963716Z", + "iopub.status.idle": "2024-07-09T08:20:26.980875Z", + "shell.execute_reply": "2024-07-09T08:20:26.980676Z" + } + }, + "outputs": [ + { + "data": { + "text/html": [ + "\n", + " " + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 8, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "show(mdp, layout=Layout(\"stars.json\"))" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.4" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/doc/index.rst b/docs/index.rst similarity index 72% rename from doc/index.rst rename to docs/index.rst index 63d13fe..00c59f8 100644 --- a/doc/index.rst +++ b/docs/index.rst @@ -5,18 +5,20 @@ Welcome to stormvogel's documentation! ====================================== +Last update: |today| + +These are our current files: .. toctree:: :maxdepth: 2 :glob: - die - - + getting_started/die + getting_started/study -Indices and tables -================== +Search for a specific page: +=========================== * :ref:`genindex` * :ref:`modindex` diff --git a/doc/model.html b/docs/model.html similarity index 100% rename from doc/model.html rename to docs/model.html diff --git a/poetry.lock b/poetry.lock index 1455df8..618be5a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -434,33 +434,33 @@ test = ["pytest"] [[package]] name = "debugpy" -version = "1.8.1" +version = "1.8.2" description = "An implementation of the Debug Adapter Protocol for Python" optional = false python-versions = ">=3.8" files = [ - {file = "debugpy-1.8.1-cp310-cp310-macosx_11_0_x86_64.whl", hash = "sha256:3bda0f1e943d386cc7a0e71bfa59f4137909e2ed947fb3946c506e113000f741"}, - {file = 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"^0.9.4" [tool.poetry.group.test.dependencies] pytest = "^8.2.2" @@ -28,6 +27,8 @@ pyright = "^1.1.368" ipykernel = "^6.29.4" jupyterlab = "^4.2.2" sphinx = "^7.3.7" +furo = "^2024.5.6" +nbsphinx = "^0.9.4" [tool.ruff] src = ["stormvogel", "examples"]