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Convert("Trans_cis_cell_type_lablled.h5ad", dest = "h5seurat", overwrite = TRUE)
Warning: Unknown file type: h5ad
Warning: 'assay' not set, setting to 'RNA'
Creating h5Seurat file for version 3.1.5.9900
Adding X as data
Adding raw/X as counts
Adding meta.features from raw/var
Adding X_scVI as cell embeddings for scVI
Adding X_umap as cell embeddings for umap
Adding _scvi_extra_categorical_covs as cell embeddings for _scvi_extra_categorical_covs
Error: Not a sparse matrix
I've been getting the error above and looked through other issues but couldn't really find anything that worked for me; I tried editing the h5ad file in python but I'm not super familiar with it so if anyone can help I'd greatly appreciate it!
The text was updated successfully, but these errors were encountered:
I've been getting the error above and looked through other issues but couldn't really find anything that worked for me; I tried editing the h5ad file in python but I'm not super familiar with it so if anyone can help I'd greatly appreciate it!
The text was updated successfully, but these errors were encountered: