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VisioProt-MS

Shiny application for visualisation and analysis of intact protein MS 2D maps.

free access to the application: https://masstools.ipbs.fr/mstools/visioprot-ms/

Publication in Bioinformatics:

Marie Locard-Paulet, Julien Parra, Renaud Albigot, Emmanuelle Mouton-Barbosa, Laurent Bardi, Odile Burlet-Schiltz, Julien Marcoux; VisioProt-MS: interactive 2D maps from intact protein mass spectrometry, Bioinformatics, , bty680, https://doi.org/10.1093/bioinformatics/bty680

Copyright CNRS 2017

Contributor : Marie Locard-Paulet (21/11/2017)

This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software,that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms.

Version history:

  • V2.0: version corresponding to the paper.

  • V2.1: November 2019 - Make the MS/MS visualisation compatible with the new file formats of TopPic and Proteome Discoverer. In this new version, the intensity of the precursor for the MSMS that gave the protein ID is not provided on hovering because this information is missing from the new outputs of Proteome Discoverer

  • V2.2: July 2020 - adapt to new TopPIC input format for msalign files.